Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0005537

Physical Location & Seq

Genomic Coordinates Reverse (-)

58840447 .. 58840924

Gene Structure 478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG272600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCTGATCACGAAGAACAGTCAGATGGAGATGTATTAAAAGAGCCGGCCATGGCATCAACAAAGGCAGCAGATTCCGAAAACAACAAGCAGGATACTGCAGGCAAGAGCAAGGAGGGTGCAACCAACACAGTACCATATTACAAGCTCTTCTCATTTGCTGATTCCCTGGATTACCTGTTAATGTCTGTTGGTACGATCAGTGCTATCGGAAATGGAGTATGTATGCCTCTAATGACCGTGATCATGGGGGAGGTGATCAACTCTTTTGGAGAAACTACGAGTATCAATAAAGTGGTTGGTATAGTTTCCAAGAAAGTGTATGAATGGGAAAATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

113

Amino Acids

12.15

Weight (kDa)

4.52

Isoelectric Point (pI)

30.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00610
malus_domestica	MD13G1139000.v1.1 MD17G1284600.v1.1
pyrus_communis	pycom16g11890
rosa_chinensis	RchiOBHm_Chr4g0427741
rosa_multiflora	Rmu_co8181678.1_g000001 Rmu_sc0000066.1_g000023 Rmu_sc0000066.1_g000038 Rmu_sc0003399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367600 Rroxscaffold_5G00369430 Rroxscaffold_5G00369490
rosa_samantha	Rh3AG272000 Rh3AG272500 Rh3DG007700 Rh3DG214800 Rh4AG272500 Rh4AG272600 Rh4AG276400 Rh4BG278200 Rh4BG278300 Rh4BG278400 Rh4BG282100 Rh4BG282300 Rh4BG282700 Rh4CG176800 Rh4CG297700 Rh4CG298200
rosa_wichuraiana	Rw4G023630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	334
AfaI	GTAC	2 cut(s)	135, 196
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	334
AsuHPI	GGTGA	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	80
BccI	CCATC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	170
BciVI	GTATCC	1 cut(s)	88
BclI	TGATCA	3 cut(s)	7, 243, 258
BfmI	CTRYAG	1 cut(s)	99
BfuI	GTATCC	1 cut(s)	88
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bme1390I	CCNGG	1 cut(s)	170
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	1 cut(s)	65
BsaJI	CCNNGG	2 cut(s)	51, 168
Bse118I	RCCGGY	1 cut(s)	46
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	2 cut(s)	51, 168
BseXI	GCAGC	1 cut(s)	80
BshFI	GGCC	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	47
BsnI	GGCC	1 cut(s)	50
Bsp143I	GATC	4 cut(s)	7, 198, 243, 258
Bsp19I	CCATGG	1 cut(s)	51
BspANI	GGCC	1 cut(s)	50
BspMAI	CTGCAG	1 cut(s)	103
BspQI	GCTCTTC	1 cut(s)	155
BsrFI	RCCGGY	1 cut(s)	46
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	2 cut(s)	51, 168
BssMI	GATC	4 cut(s)	7, 198, 243, 258
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	3 cut(s)	21, 133, 241
Bst6I	CTCTTC	1 cut(s)	155
BstC8I	GCNNGC	2 cut(s)	48, 103
BstDSI	CCRYGG	1 cut(s)	51
BstKTI	GATC	4 cut(s)	10, 201, 246, 261
BstMBI	GATC	4 cut(s)	7, 198, 243, 258
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	168
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	80
BsuI	GTATCC	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	208
Cac8I	GCNNGC	2 cut(s)	48, 103
Cfr10I	RCCGGY	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	134, 195
CviAII	CATG	2 cut(s)	52, 247
CviJI	RGCY	4 cut(s)	5, 46, 50, 148
CviKI_1	RGCY	4 cut(s)	5, 46, 50, 148
CviQI	GTAC	2 cut(s)	134, 195
DpnI	GATC	4 cut(s)	9, 200, 245, 260
DpnII	GATC	4 cut(s)	7, 198, 243, 258
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	2 cut(s)	55, 250
FaiI	YATR	7 cut(s)	53, 139, 223, 227, 248, 305, 324
FatI	CATG	2 cut(s)	51, 246
FbaI	TGATCA	3 cut(s)	7, 243, 258
Fnu4HI	GCNGC	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	69
GluI	GCNGC	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	1 cut(s)	47
Hin1II	CATG	2 cut(s)	55, 250
HinfI	GANTC	2 cut(s)	74, 164
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	1 cut(s)	268
Hpy188I	TCNGA	3 cut(s)	25, 79, 212
Hpy188III	TCNNGA	2 cut(s)	11, 339
HpyCH4III	ACNGT	3 cut(s)	21, 133, 241
HpyCH4V	TGCA	2 cut(s)	101, 122
Hsp92II	CATG	2 cut(s)	55, 250
KroI	GCCGGC	1 cut(s)	46
KroNI	GCCGGC	1 cut(s)	48
Ksp22I	TGATCA	3 cut(s)	7, 243, 258
Kzo9I	GATC	4 cut(s)	7, 198, 243, 258
LguI	GCTCTTC	1 cut(s)	155
LpnPI	CCDG	6 cut(s)	60, 77, 87, 155, 182, 191
Lsp1109I	GCAGC	1 cut(s)	80
LweI	GCATC	1 cut(s)	65
MalI	GATC	4 cut(s)	9, 200, 245, 260
MboI	GATC	4 cut(s)	7, 198, 243, 258
MboII	GAAGA	2 cut(s)	26, 142
MluCI	AATT	1 cut(s)	334
MnlI	CCTC	3 cut(s)	109, 240, 247
MroNI	GCCGGC	1 cut(s)	46
MseI	TTAA	2 cut(s)	38, 182
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	170
NaeI	GCCGGC	1 cut(s)	48
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	4 cut(s)	7, 198, 243, 258
NgoMIV	GCCGGC	1 cut(s)	46
NlaIII	CATG	2 cut(s)	55, 250
PciSI	GCTCTTC	1 cut(s)	155
PdiI	GCCGGC	1 cut(s)	48
PfeI	GAWTC	2 cut(s)	74, 164
PkrI	GCNGC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PstI	CTGCAG	1 cut(s)	103
RsaI	GTAC	2 cut(s)	135, 196
RsaNI	GTAC	2 cut(s)	134, 195
SapI	GCTCTTC	1 cut(s)	155
SaqAI	TTAA	2 cut(s)	38, 182
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	4 cut(s)	7, 198, 243, 258
ScrFI	CCNGG	1 cut(s)	170
SetI	ASST	3 cut(s)	150, 180, 258
SfaNI	GCATC	1 cut(s)	65
SfcI	CTRYAG	1 cut(s)	99
Sse9I	AATT	1 cut(s)	334
StyD4I	CCNGG	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	3 cut(s)	21, 133, 241
TasI	AATT	1 cut(s)	334
TfiI	GAWTC	2 cut(s)	74, 164
Tru1I	TTAA	2 cut(s)	38, 182
Tru9I	TTAA	2 cut(s)	38, 182
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	1 cut(s)	68
TspDTI	ATGAA	1 cut(s)	339
TspRI	CASTG	1 cut(s)	208
XapI	RAATTY	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.