Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005537

Physical Location & Seq

Genomic Coordinates Reverse (-)

45201942 .. 45212559

Gene Structure 10618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG278300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCTGATCACGAAGAACAGTCAGATGGAGATGTATTAAAAGAGCCGGCCATGGCATCAACAAAGGCAGCAGATTCCGAAAACAACAAGCAGGATACTGCAGGCAAGAGCAAGGAGGGTGCAACCAACACAGTACCATATTACAAGCTCTTCTCATTTGCTGATTCCCTGGATTACCTGTTAATGTCTGTTGGTACGATCAGTGCTATCGGAAATGGAGTATGTATGCCTCTAATGACCGTGATCATGGGGGAGGTGATCAACTCTTTTGGAGAAACTACGAGTATCAATAAAGTGGTTGGTATAGTTTCCAAGGTGGCTCTCAAGTACGTTTACTTGGCTCTGGGGGCTGCTGCTGCTGCATTTTTACGTATGTACATCAGATTCTCTGCTGACATAAAACTTACCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

137

Amino Acids

14.63

Weight (kDa)

5.06

Isoelectric Point (pI)

28.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00610
malus_domestica	MD13G1139000.v1.1 MD17G1284600.v1.1
pyrus_communis	pycom16g11890
rosa_chinensis	RchiOBHm_Chr4g0427741
rosa_multiflora	Rmu_co8181678.1_g000001 Rmu_sc0000066.1_g000023 Rmu_sc0000066.1_g000038 Rmu_sc0003399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367600 Rroxscaffold_5G00369430 Rroxscaffold_5G00369490
rosa_samantha	Rh3AG272000 Rh3AG272500 Rh3DG007700 Rh3DG214800 Rh4AG272500 Rh4AG272600 Rh4AG276400 Rh4BG278200 Rh4BG278300 Rh4BG278400 Rh4BG282100 Rh4BG282300 Rh4BG282700 Rh4CG176800 Rh4CG297700 Rh4CG298200
rosa_wichuraiana	Rw4G023630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	48
AfaI	GTAC	4 cut(s)	135, 196, 329, 377
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	5 cut(s)	68, 350, 353, 356, 359
AsuHPI	GGTGA	1 cut(s)	268
BbvI	GCAGC	5 cut(s)	80, 337, 340, 343, 346
BccI	CCATC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	170
BciVI	GTATCC	1 cut(s)	88
BclI	TGATCA	3 cut(s)	7, 243, 258
BfaI	CTAG	1 cut(s)	412
BfmI	CTRYAG	1 cut(s)	99
BfuI	GTATCC	1 cut(s)	88
BisI	GCNGC	5 cut(s)	69, 351, 354, 357, 360
BlsI	GCNGC	5 cut(s)	70, 352, 355, 358, 361
Bme1390I	CCNGG	1 cut(s)	170
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	371
BsaJI	CCNNGG	3 cut(s)	51, 168, 312
Bse118I	RCCGGY	1 cut(s)	46
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	3 cut(s)	51, 168, 312
BseXI	GCAGC	5 cut(s)	80, 337, 340, 343, 346
BshFI	GGCC	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	47
BsnI	GGCC	1 cut(s)	50
Bsp1407I	TGTACA	1 cut(s)	375
Bsp143I	GATC	4 cut(s)	7, 198, 243, 258
Bsp19I	CCATGG	1 cut(s)	51
BspANI	GGCC	1 cut(s)	50
BspMAI	CTGCAG	1 cut(s)	103
BspQI	GCTCTTC	1 cut(s)	155
BsrFI	RCCGGY	1 cut(s)	46
BsrGI	TGTACA	1 cut(s)	375
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	3 cut(s)	51, 168, 312
BssMI	GATC	4 cut(s)	7, 198, 243, 258
BssT1I	CCWWGG	2 cut(s)	51, 312
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	3 cut(s)	21, 133, 241
Bst6I	CTCTTC	1 cut(s)	155
BstAUI	TGTACA	1 cut(s)	375
BstBAI	YACGTR	1 cut(s)	371
BstC8I	GCNNGC	2 cut(s)	48, 103
BstDSI	CCRYGG	1 cut(s)	51
BstKTI	GATC	4 cut(s)	10, 201, 246, 261
BstMBI	GATC	4 cut(s)	7, 198, 243, 258
BstMWI	GCNNNNNNNGC	3 cut(s)	347, 356, 359
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	168
BstSFI	CTRYAG	1 cut(s)	99
BstSNI	TACGTA	1 cut(s)	371
BstV1I	GCAGC	5 cut(s)	80, 337, 340, 343, 346
BsuI	GTATCC	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	208
Cac8I	GCNNGC	2 cut(s)	48, 103
Cfr10I	RCCGGY	1 cut(s)	46
Csp6I	GTAC	4 cut(s)	134, 195, 328, 376
CviAII	CATG	2 cut(s)	52, 247
CviJI	RGCY	7 cut(s)	5, 46, 50, 148, 320, 341, 350
CviKI_1	RGCY	7 cut(s)	5, 46, 50, 148, 320, 341, 350
CviQI	GTAC	4 cut(s)	134, 195, 328, 376
DpnI	GATC	4 cut(s)	9, 200, 245, 260
DpnII	GATC	4 cut(s)	7, 198, 243, 258
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco105I	TACGTA	1 cut(s)	371
Eco130I	CCWWGG	2 cut(s)	51, 312
EcoRII	CCWGG	1 cut(s)	168
EcoT14I	CCWWGG	2 cut(s)	51, 312
ErhI	CCWWGG	2 cut(s)	51, 312
FaeI	CATG	2 cut(s)	55, 250
FaiI	YATR	8 cut(s)	53, 139, 223, 227, 248, 305, 374, 398
FatI	CATG	2 cut(s)	51, 246
FbaI	TGATCA	3 cut(s)	7, 243, 258
Fnu4HI	GCNGC	5 cut(s)	69, 351, 354, 357, 360
Fsp4HI	GCNGC	5 cut(s)	69, 351, 354, 357, 360
FspBI	CTAG	1 cut(s)	412
GluI	GCNGC	5 cut(s)	69, 351, 354, 357, 360
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	1 cut(s)	47
Hin1II	CATG	2 cut(s)	55, 250
HinfI	GANTC	3 cut(s)	74, 164, 384
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	4 cut(s)	25, 79, 212, 383
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	1 cut(s)	334
HpyCH4III	ACNGT	3 cut(s)	21, 133, 241
HpyCH4IV	ACGT	2 cut(s)	330, 370
HpyCH4V	TGCA	3 cut(s)	101, 122, 362
HpyF10VI	GCNNNNNNNGC	3 cut(s)	347, 356, 359
HpySE526I	ACGT	2 cut(s)	330, 370
Hsp92II	CATG	2 cut(s)	55, 250
KroI	GCCGGC	1 cut(s)	46
KroNI	GCCGGC	1 cut(s)	48
Ksp22I	TGATCA	3 cut(s)	7, 243, 258
Kzo9I	GATC	4 cut(s)	7, 198, 243, 258
LguI	GCTCTTC	1 cut(s)	155
LpnPI	CCDG	7 cut(s)	60, 77, 87, 155, 182, 191, 329
Lsp1109I	GCAGC	5 cut(s)	80, 337, 340, 343, 346
LweI	GCATC	1 cut(s)	65
MaeI	CTAG	1 cut(s)	412
MaeII	ACGT	2 cut(s)	330, 370
MalI	GATC	4 cut(s)	9, 200, 245, 260
MboI	GATC	4 cut(s)	7, 198, 243, 258
MboII	GAAGA	2 cut(s)	26, 142
MnlI	CCTC	3 cut(s)	109, 240, 247
MroNI	GCCGGC	1 cut(s)	46
MseI	TTAA	2 cut(s)	38, 182
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	3 cut(s)	347, 356, 359
NaeI	GCCGGC	1 cut(s)	48
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	4 cut(s)	7, 198, 243, 258
NgoMIV	GCCGGC	1 cut(s)	46
NlaIII	CATG	2 cut(s)	55, 250
PciSI	GCTCTTC	1 cut(s)	155
PdiI	GCCGGC	1 cut(s)	48
PfeI	GAWTC	3 cut(s)	74, 164, 384
PkrI	GCNGC	5 cut(s)	70, 352, 355, 358, 361
Ppu21I	YACGTR	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PstI	CTGCAG	1 cut(s)	103
RsaI	GTAC	4 cut(s)	135, 196, 329, 377
RsaNI	GTAC	4 cut(s)	134, 195, 328, 376
SapI	GCTCTTC	1 cut(s)	155
SaqAI	TTAA	2 cut(s)	38, 182
SatI	GCNGC	5 cut(s)	69, 351, 354, 357, 360
Sau3AI	GATC	4 cut(s)	7, 198, 243, 258
ScrFI	CCNGG	1 cut(s)	170
SetI	ASST	6 cut(s)	150, 180, 258, 318, 333, 373
SfaNI	GCATC	1 cut(s)	65
SfcI	CTRYAG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
SnaBI	TACGTA	1 cut(s)	371
SspMI	CTAG	1 cut(s)	412
StyD4I	CCNGG	1 cut(s)	168
StyI	CCWWGG	2 cut(s)	51, 312
TaaI	ACNGT	3 cut(s)	21, 133, 241
TaiI	ACGT	2 cut(s)	333, 373
TatI	WGTACW	1 cut(s)	375
TfiI	GAWTC	3 cut(s)	74, 164, 384
Tru1I	TTAA	2 cut(s)	38, 182
Tru9I	TTAA	2 cut(s)	38, 182
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	5 cut(s)	68, 350, 353, 356, 359
TspRI	CASTG	1 cut(s)	208
XspI	CTAG	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.