Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005537

Physical Location & Seq

Genomic Coordinates Forward (+)

51307173 .. 51311648

Gene Structure 4476 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00369490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCTGAGGAGAATCCCTTGGATGGAGATGCAATAACCAAACAAGAAAATGCAACAAATAGCCATCCAGCAGTGAAGGAGGGTTCCAACGAAAACAGACAAGATACAAGCAAGAGCAAGGAGGATGGAACTAAAACAGTTCCGCTTTACAAACTTTTCTCTTTTGCCGATTCCATGGATTACCTTTTAATGTCTGTTGGTACAATCAGCGCTATTGGTAATGGACTCTGTATGCCTCTACTGACCATAATCTTTGGAGATCTAATTACTTCTTTCAGAGAAACTGGGAATAACAAGGGAGTGGCTGATGCAGTTTCCAAGATGTCATGCTGGATGAGCACTGGAGAGAGACAGGCTGCACGAATACGAAGTTTATACTTGAAGACCCTACTGAGGCAAGATGTCAGCTTTTTTGATCAAGAAATCAACTCTGGGGAAATTCTTGGGAGGATGTCAGGTGATACTCTGCTCATTAAAGAGGCTATGGGCGAGAAGGGATGGCTTCTCACCCTTGTCATGCTATCCTCTATTCCCCCTCTTGTCTTATCTGGTGCTGTCATGAACTATTTCATAGTGAAATTGGCGTCCCATGGACAAGCTGCATATTCAGGAGGAGCAATTGTGGTAGAGGAGACAATTGGTTCTATCAGAACTTGTCTCCTTGCATCACTTGCATTTGCTCCTGGACAAGCTGCGACTTATAAGATGTTTGAGACAATTAACGAAAAGGAGATAGATGCATATGATACTACGGGAGGGTATTACAAGATATTCGTGGAGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

261

Amino Acids

28.35

Weight (kDa)

4.92

Isoelectric Point (pI)

38.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	108 - 165	9.1e-11	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00610
malus_domestica	MD13G1139000.v1.1 MD17G1284600.v1.1
pyrus_communis	pycom16g11890
rosa_chinensis	RchiOBHm_Chr4g0427741
rosa_multiflora	Rmu_co8181678.1_g000001 Rmu_sc0000066.1_g000023 Rmu_sc0000066.1_g000038 Rmu_sc0003399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367600 Rroxscaffold_5G00369430 Rroxscaffold_5G00369490
rosa_samantha	Rh3AG272000 Rh3AG272500 Rh3DG007700 Rh3DG214800 Rh4AG272500 Rh4AG272600 Rh4AG276400 Rh4BG278200 Rh4BG278300 Rh4BG278400 Rh4BG282100 Rh4BG282300 Rh4BG282700 Rh4CG176800 Rh4CG297700 Rh4CG298200
rosa_wichuraiana	Rw4G023630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	702
AciI	CCGC	1 cut(s)	143
AcsI	RAATTY	1 cut(s)	438
AcyI	GRCGYC	1 cut(s)	584
AfaI	GTAC	1 cut(s)	202
AfeI	AGCGCT	1 cut(s)	211
AfiI	CCNNNNNNNGG	2 cut(s)	23, 393
AgsI	TTSAA	1 cut(s)	382
AjnI	CCWGG	1 cut(s)	682
AluBI	AGCT	3 cut(s)	408, 599, 692
AluI	AGCT	3 cut(s)	408, 599, 692
Alw21I	GWGCWC	1 cut(s)	341
Alw26I	GTCTC	5 cut(s)	343, 626, 662, 707, 773
Aor51HI	AGCGCT	1 cut(s)	211
ApeKI	GCWGC	3 cut(s)	356, 599, 692
ApoI	RAATTY	1 cut(s)	438
Asp700I	GAANNNNTTC	1 cut(s)	566
AspLEI	GCGC	1 cut(s)	212
AsuHPI	GGTGA	2 cut(s)	470, 499
BbsI	GAAGAC	1 cut(s)	389
Bbv12I	GWGCWC	1 cut(s)	341
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	3 cut(s)	343, 586, 679
BccI	CCATC	4 cut(s)	17, 72, 119, 492
BciT130I	CCWGG	1 cut(s)	684
BclI	TGATCA	1 cut(s)	415
BcoDI	GTCTC	5 cut(s)	343, 626, 662, 707, 773
BfoI	RGCGCY	1 cut(s)	213
BglII	AGATCT	1 cut(s)	259
BisI	GCNGC	3 cut(s)	357, 600, 693
BlsI	GCNGC	3 cut(s)	358, 601, 694
Bme1390I	CCNGG	1 cut(s)	684
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	684
BmrI	ACTGGG	1 cut(s)	294
BmsI	GCATC	4 cut(s)	19, 298, 674, 727
BmuI	ACTGGG	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	389
BpmI	CTGGAG	1 cut(s)	363
Bpu10I	CCTNAGC	1 cut(s)	6
BsaHI	GRCGYC	1 cut(s)	584
BsaJI	CCNNGG	3 cut(s)	18, 174, 589
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 393
Bse1I	ACTGG	2 cut(s)	289, 346
BseBI	CCWGG	1 cut(s)	684
BseDI	CCNNGG	3 cut(s)	18, 174, 589
BseGI	GGATG	6 cut(s)	28, 64, 130, 339, 456, 503
BseLI	CCNNNNNNNGG	2 cut(s)	23, 393
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	2 cut(s)	289, 346
BseRI	GAGGAG	3 cut(s)	23, 627, 644
BseXI	GCAGC	3 cut(s)	343, 586, 679
BsgI	GTGCAG	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	341
BslFI	GGGAC	1 cut(s)	571
BslI	CCNNNNNNNGG	2 cut(s)	23, 393
BsmAI	GTCTC	5 cut(s)	343, 626, 662, 707, 773
BsmFI	GGGAC	1 cut(s)	571
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp143I	GATC	2 cut(s)	259, 415
Bsp19I	CCATGG	2 cut(s)	174, 589
BspACI	CCGC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	384
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	1 cut(s)	85
BsrI	ACTGG	2 cut(s)	289, 346
BssECI	CCNNGG	3 cut(s)	18, 174, 589
BssMI	GATC	2 cut(s)	259, 415
BssNI	GRCGYC	1 cut(s)	584
BssT1I	CCWWGG	3 cut(s)	18, 174, 589
Bst2UI	CCWGG	1 cut(s)	684
Bst4CI	ACNGT	1 cut(s)	139
BstACI	GRCGYC	1 cut(s)	584
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstDEI	CTNAG	2 cut(s)	6, 392
BstDSI	CCRYGG	2 cut(s)	174, 589
BstF5I	GGATG	6 cut(s)	28, 64, 130, 339, 456, 503
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	2 cut(s)	262, 418
BstMAI	GTCTC	5 cut(s)	343, 626, 662, 707, 773
BstMBI	GATC	2 cut(s)	259, 415
BstMWI	GCNNNNNNNGC	2 cut(s)	336, 671
BstNI	CCWGG	1 cut(s)	684
BstSCI	CCNGG	1 cut(s)	682
BstV1I	GCAGC	3 cut(s)	343, 586, 679
BstV2I	GAAGAC	1 cut(s)	389
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BtgI	CCRYGG	2 cut(s)	174, 589
BtsCI	GGATG	6 cut(s)	28, 64, 130, 339, 456, 503
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	78, 339
CciI	TCATGA	1 cut(s)	558
CfoI	GCGC	1 cut(s)	212
CseI	GACGC	1 cut(s)	573
Csp6I	GTAC	1 cut(s)	201
CviAII	CATG	5 cut(s)	175, 327, 517, 559, 590
CviJI	RGCY	9 cut(s)	5, 63, 305, 356, 408, 482, 502, 599, 692
CviKI_1	RGCY	9 cut(s)	5, 63, 305, 356, 408, 482, 502, 599, 692
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	2 cut(s)	6, 392
DpnI	GATC	2 cut(s)	261, 417
DpnII	GATC	2 cut(s)	259, 415
Eco130I	CCWWGG	3 cut(s)	18, 174, 589
Eco47III	AGCGCT	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	682
EcoT14I	CCWWGG	3 cut(s)	18, 174, 589
EcoT22I	ATGCAT	1 cut(s)	742
ErhI	CCWWGG	3 cut(s)	18, 174, 589
FaeI	CATG	5 cut(s)	178, 330, 520, 562, 593
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	5 cut(s)	174, 326, 516, 558, 589
FauNDI	CATATG	1 cut(s)	742
FbaI	TGATCA	1 cut(s)	415
Fnu4HI	GCNGC	3 cut(s)	357, 600, 693
FokI	GGATG	6 cut(s)	35, 51, 137, 346, 463, 510
Fsp4HI	GCNGC	3 cut(s)	357, 600, 693
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	3 cut(s)	357, 600, 693
GsuI	CTGGAG	1 cut(s)	363
HaeII	RGCGCY	1 cut(s)	213
HgaI	GACGC	1 cut(s)	573
HhaI	GCGC	1 cut(s)	212
Hin1I	GRCGYC	1 cut(s)	584
Hin1II	CATG	5 cut(s)	178, 330, 520, 562, 593
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HinfI	GANTC	3 cut(s)	13, 170, 225
HphI	GGTGA	2 cut(s)	470, 499
Hpy188I	TCNGA	2 cut(s)	278, 650
Hpy188III	TCNNGA	3 cut(s)	419, 559, 609
HpyAV	CCTTC	2 cut(s)	70, 487
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	8 cut(s)	32, 53, 311, 359, 602, 665, 674, 740
HpyF10VI	GCNNNNNNNGC	2 cut(s)	336, 671
HpyF3I	CTNAG	2 cut(s)	6, 392
Hsp92I	GRCGYC	1 cut(s)	584
Hsp92II	CATG	5 cut(s)	178, 330, 520, 562, 593
HspAI	GCGC	1 cut(s)	210
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	2 cut(s)	259, 415
LmnI	GCTCC	2 cut(s)	614, 685
Lsp1109I	GCAGC	3 cut(s)	343, 586, 679
LweI	GCATC	4 cut(s)	19, 298, 674, 727
MalI	GATC	2 cut(s)	261, 417
MboI	GATC	2 cut(s)	259, 415
MboII	GAAGA	1 cut(s)	394
MfeI	CAATTG	2 cut(s)	618, 636
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	341
MluCI	AATT	6 cut(s)	264, 438, 578, 618, 636, 717
MlyI	GAGTC	1 cut(s)	219
MmeI	TCCRAC	1 cut(s)	111
Mph1103I	ATGCAT	1 cut(s)	742
MroXI	GAANNNNTTC	1 cut(s)	566
MseI	TTAA	3 cut(s)	188, 474, 720
MspR9I	CCNGG	1 cut(s)	684
MunI	CAATTG	2 cut(s)	618, 636
MvaI	CCWGG	1 cut(s)	684
MwoI	GCNNNNNNNGC	2 cut(s)	336, 671
NcoI	CCATGG	2 cut(s)	174, 589
NdeI	CATATG	1 cut(s)	742
NdeII	GATC	2 cut(s)	259, 415
NlaIII	CATG	5 cut(s)	178, 330, 520, 562, 593
NlaIV	GGNNCC	1 cut(s)	85
NsiI	ATGCAT	1 cut(s)	742
PagI	TCATGA	1 cut(s)	558
PdmI	GAANNNNTTC	1 cut(s)	566
PfeI	GAWTC	2 cut(s)	13, 170
PfoI	TCCNGGA	1 cut(s)	682
PkrI	GCNGC	3 cut(s)	358, 601, 694
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
PsiI	TTATAA	1 cut(s)	702
Psp6I	CCWGG	1 cut(s)	682
PspGI	CCWGG	1 cut(s)	682
PspN4I	GGNNCC	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	259
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
SaqAI	TTAA	3 cut(s)	188, 474, 720
SatI	GCNGC	3 cut(s)	357, 600, 693
Sau3AI	GATC	2 cut(s)	259, 415
SchI	GAGTC	1 cut(s)	219
ScrFI	CCNGG	1 cut(s)	684
SduI	GDGCHC	1 cut(s)	341
SetI	ASST	5 cut(s)	186, 410, 460, 601, 694
SfaNI	GCATC	4 cut(s)	19, 298, 674, 727
Sse9I	AATT	6 cut(s)	264, 438, 578, 618, 636, 717
SsiI	CCGC	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	682
StyI	CCWWGG	3 cut(s)	18, 174, 589
TaaI	ACNGT	1 cut(s)	139
TasI	AATT	6 cut(s)	264, 438, 578, 618, 636, 717
TfiI	GAWTC	2 cut(s)	13, 170
Tru1I	TTAA	3 cut(s)	188, 474, 720
Tru9I	TTAA	3 cut(s)	188, 474, 720
TscAI	CASTG	2 cut(s)	78, 346
TseI	GCWGC	3 cut(s)	356, 599, 692
TspDTI	ATGAA	2 cut(s)	559, 575
TspRI	CASTG	2 cut(s)	78, 346
XapI	RAATTY	1 cut(s)	438
XmnI	GAANNNNTTC	1 cut(s)	566
Zsp2I	ATGCAT	1 cut(s)	742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.