Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005537

Physical Location & Seq

Genomic Coordinates Reverse (-)

38486824 .. 38487745

Gene Structure 922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG176800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTCTTGCTGGATGATCACTGGAGAGAGACAGGCTGCACGAATACGAAGTCTATACTTGAAAACCATATTGAGGCAAGATGTTGGGTTTTTTGATAAAGAAATCAACTCTGGAGAAATTGTTGGGAGGATGTCAGGTGATACTGTGCTTATTCAAGAGGCGATGGGCGAGAAGGTAGGGAGTTTCATTCAGTTAGTTGCAACGTTCATTGGGGGCTTCGGAATAGCATTTACTAAGGGATGGCTTCTAACCCATGTCATGCTATCCTCTATTCCCCCTGTTGTCTTCACTACTGCTGTCCTGAACCATTTCATGGTGAAATTGGCGTCCCGCGGACAAGCTGCATATTCAGAAGGGGCTACTGTTGTAGAGGAGACAATTGATTCAATCAGAACTGTTGCATCATTCACAGGGGAGAAGCAGACAATATCTAACAACAATGCCTCCTTAACTAAAGCTTACAAGTTGGCTGGGCAAGAGGGTTGGGCGTCTGGTTTGGGTTTTGGTGCGGTTATGCTCATGGTCTCTTGGGAAAGCAACTCCGTGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

183

Amino Acids

19.82

Weight (kDa)

6.83

Isoelectric Point (pI)

33.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	2 - 175	4.1e-40	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00610
malus_domestica	MD13G1139000.v1.1 MD17G1284600.v1.1
pyrus_communis	pycom16g11890
rosa_chinensis	RchiOBHm_Chr4g0427741
rosa_multiflora	Rmu_co8181678.1_g000001 Rmu_sc0000066.1_g000023 Rmu_sc0000066.1_g000038 Rmu_sc0003399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367600 Rroxscaffold_5G00369430 Rroxscaffold_5G00369490
rosa_samantha	Rh3AG272000 Rh3AG272500 Rh3DG007700 Rh3DG214800 Rh4AG272500 Rh4AG272600 Rh4AG276400 Rh4BG278200 Rh4BG278300 Rh4BG278400 Rh4BG282100 Rh4BG282300 Rh4BG282700 Rh4CG176800 Rh4CG297700 Rh4CG298200
rosa_wichuraiana	Rw4G023630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	313
AccII	CGCG	1 cut(s)	333
AciI	CCGC	3 cut(s)	331, 333, 509
AclI	AACGTT	1 cut(s)	203
AcyI	GRCGYC	2 cut(s)	326, 488
AfiI	CCNNNNNNNGG	2 cut(s)	72, 313
AgsI	TTSAA	3 cut(s)	61, 155, 387
AluBI	AGCT	2 cut(s)	341, 458
AluI	AGCT	2 cut(s)	341, 458
Alw26I	GTCTC	3 cut(s)	22, 368, 529
ApeKI	GCWGC	2 cut(s)	35, 341
ArsI	GACNNNNNNTTYG	2 cut(s)	34, 66
Asp700I	GAANNNNTTC	1 cut(s)	308
AsuHPI	GGTGA	2 cut(s)	149, 328
BbsI	GAAGAC	1 cut(s)	277
BbvI	GCAGC	2 cut(s)	22, 328
BccI	CCATC	2 cut(s)	157, 234
BclI	TGATCA	1 cut(s)	15
BcoDI	GTCTC	3 cut(s)	22, 368, 529
BisI	GCNGC	2 cut(s)	36, 342
BlsI	GCNGC	2 cut(s)	37, 343
BmsI	GCATC	1 cut(s)	410
BpiI	GAAGAC	1 cut(s)	277
BpmI	CTGGAG	2 cut(s)	42, 132
BsaHI	GRCGYC	2 cut(s)	326, 488
BsaI	GGTCTC	1 cut(s)	529
BsaJI	CCNNGG	1 cut(s)	331
BsaXI	ACNNNNNCTCC	4 cut(s)	105, 135, 428, 458
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 313
Bse1I	ACTGG	1 cut(s)	25
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	3 cut(s)	18, 135, 245
BseLI	CCNNNNNNNGG	2 cut(s)	72, 313
BseNI	ACTGG	1 cut(s)	25
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	2 cut(s)	22, 328
BseYI	CCCAGC	1 cut(s)	470
BsgI	GTGCAG	1 cut(s)	21
Bsh1236I	CGCG	1 cut(s)	333
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	2 cut(s)	72, 313
BsmAI	GTCTC	3 cut(s)	22, 368, 529
BsmFI	GGGAC	1 cut(s)	313
Bso31I	GGTCTC	1 cut(s)	529
Bsp143I	GATC	1 cut(s)	15
BspACI	CCGC	3 cut(s)	331, 333, 509
BspFNI	CGCG	1 cut(s)	333
BspTNI	GGTCTC	1 cut(s)	529
BsrI	ACTGG	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	1 cut(s)	15
BssNI	GRCGYC	2 cut(s)	326, 488
Bst4CI	ACNGT	3 cut(s)	145, 364, 397
BstACI	GRCGYC	2 cut(s)	326, 488
BstDEI	CTNAG	1 cut(s)	234
BstDSI	CCRYGG	1 cut(s)	331
BstF5I	GGATG	3 cut(s)	18, 135, 245
BstFNI	CGCG	1 cut(s)	333
BstKTI	GATC	1 cut(s)	18
BstMAI	GTCTC	3 cut(s)	22, 368, 529
BstMBI	GATC	1 cut(s)	15
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	2 cut(s)	22, 328
BstV2I	GAAGAC	1 cut(s)	277
BtgI	CCRYGG	1 cut(s)	331
BtgZI	GCGATG	1 cut(s)	176
BtsCI	GGATG	3 cut(s)	18, 135, 245
BtsIMutI	CAGTG	1 cut(s)	18
Cfr42I	CCGCGG	1 cut(s)	334
CseI	GACGC	2 cut(s)	315, 477
CviAII	CATG	4 cut(s)	254, 259, 313, 520
CviJI	RGCY	7 cut(s)	35, 216, 244, 341, 359, 458, 470
CviKI_1	RGCY	7 cut(s)	35, 216, 244, 341, 359, 458, 470
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
Eco31I	GGTCTC	1 cut(s)	529
FaeI	CATG	4 cut(s)	257, 262, 316, 523
FaiI	YATR	8 cut(s)	55, 68, 255, 260, 314, 346, 515, 521
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	4 cut(s)	253, 258, 312, 519
FauI	CCCGC	1 cut(s)	338
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	2 cut(s)	36, 342
FokI	GGATG	3 cut(s)	25, 142, 252
Fsp4HI	GCNGC	2 cut(s)	36, 342
GluI	GCNGC	2 cut(s)	36, 342
GsaI	CCCAGC	1 cut(s)	474
GsuI	CTGGAG	2 cut(s)	42, 132
HgaI	GACGC	2 cut(s)	315, 477
Hin1I	GRCGYC	2 cut(s)	326, 488
Hin1II	CATG	4 cut(s)	257, 262, 316, 523
HindIII	AAGCTT	1 cut(s)	456
HinfI	GANTC	1 cut(s)	383
HphI	GGTGA	2 cut(s)	149, 328
Hpy188I	TCNGA	3 cut(s)	221, 352, 392
Hpy188III	TCNNGA	3 cut(s)	111, 155, 301
HpyAV	CCTTC	2 cut(s)	166, 347
HpyCH4III	ACNGT	3 cut(s)	145, 364, 397
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	5 cut(s)	38, 200, 344, 401, 547
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	203
Hsp92I	GRCGYC	2 cut(s)	326, 488
Hsp92II	CATG	4 cut(s)	257, 262, 316, 523
Ksp22I	TGATCA	1 cut(s)	15
KspI	CCGCGG	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	15
LpnPI	CCDG	9 cut(s)	6, 17, 96, 120, 291, 314, 396, 456, 477
Lsp1109I	GCAGC	2 cut(s)	22, 328
LweI	GCATC	1 cut(s)	410
MaeII	ACGT	1 cut(s)	203
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	1 cut(s)	277
MfeI	CAATTG	1 cut(s)	378
MluCI	AATT	3 cut(s)	117, 320, 378
MnlI	CCTC	7 cut(s)	66, 120, 151, 277, 364, 454, 472
MroXI	GAANNNNTTC	1 cut(s)	308
MseI	TTAA	1 cut(s)	449
MspA1I	CMGCKG	1 cut(s)	333
MunI	CAATTG	1 cut(s)	378
MvnI	CGCG	1 cut(s)	333
NdeII	GATC	1 cut(s)	15
NlaIII	CATG	4 cut(s)	257, 262, 316, 523
PdmI	GAANNNNTTC	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	383
PflMI	CCANNNNNTGG	1 cut(s)	313
PkrI	GCNGC	2 cut(s)	37, 343
Psp1406I	AACGTT	1 cut(s)	203
PspFI	CCCAGC	1 cut(s)	470
SacII	CCGCGG	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	449
SatI	GCNGC	2 cut(s)	36, 342
Sau3AI	GATC	1 cut(s)	15
SetI	ASST	5 cut(s)	139, 177, 206, 343, 460
SfaNI	GCATC	1 cut(s)	410
Sfr303I	CCGCGG	1 cut(s)	334
SgrBI	CCGCGG	1 cut(s)	334
Sse9I	AATT	3 cut(s)	117, 320, 378
SsiI	CCGC	3 cut(s)	331, 333, 509
TaaI	ACNGT	3 cut(s)	145, 364, 397
TaiI	ACGT	1 cut(s)	206
TasI	AATT	3 cut(s)	117, 320, 378
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TscAI	CASTG	1 cut(s)	25
TseI	GCWGC	2 cut(s)	35, 341
TspDTI	ATGAA	3 cut(s)	175, 196, 301
TspGWI	ACGGA	1 cut(s)	532
TspRI	CASTG	1 cut(s)	25
Van91I	CCANNNNNTGG	1 cut(s)	313
XmnI	GAANNNNTTC	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.