Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005537

Physical Location & Seq

Genomic Coordinates Forward (+)

45671629 .. 45690446

Gene Structure 18818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG282300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCTGAATTGAATCCTACGGATGGAGATGTAGTCACCGAGCAAGACATTGCATCGAATAGCCACTCAGCAGTGGCAGCGGTTTCCAAAGAACATGAACAAGATACGAACAAGAGCAAGGAGGACGGAACAAATACAGTACCATATTACAAGCTTTTCTCCTTTGCTGATTCTGTGGATTACATGTTAATGTCTACTGGTACAATCAGCGCTGTTGGAAATGGACTCTGTATGCCCCTAATGACTATACTCATGGGAGATATGATTAATTCGTTTGGAGAAACTAGGAATAACAAAGAAGTGGCTAATGCAGTTTCCAAGGTGGCTCTGAAGTTCTTTTACTTGGCTCTGGGGGCTGCTGCTGCATCATTTCTACAGATGTCTTGCTGGATGATCACTGGAGAGAGACAGGCTGCACGAATACGAAGTCTATACTTGAAAACCATATTGAGGCAAGATGTTGGGTATTTTGATAAAGAAATCAACTCTGGGGAAATTGTTGGGAGGATGTCAGGTGATACTGTGCTTATTCAAGAGGCAATGGGCGAGAAGGTGGCTCTGAAGTTCATTTACTTGGCTTTTGGGGCTGCTGCTGCAGCATTTCTGCGTAAGTACATTGCCTTCCCTGCTACACTAAAACTTGCCATCTCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

218

Amino Acids

23.67

Weight (kDa)

5.46

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	67 - 194	1.6e-24	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00610
malus_domestica	MD13G1139000.v1.1 MD17G1284600.v1.1
pyrus_communis	pycom16g11890
rosa_chinensis	RchiOBHm_Chr4g0427741
rosa_multiflora	Rmu_co8181678.1_g000001 Rmu_sc0000066.1_g000023 Rmu_sc0000066.1_g000038 Rmu_sc0003399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367600 Rroxscaffold_5G00369430 Rroxscaffold_5G00369490
rosa_samantha	Rh3AG272000 Rh3AG272500 Rh3DG007700 Rh3DG214800 Rh4AG272500 Rh4AG272600 Rh4AG276400 Rh4BG278200 Rh4BG278300 Rh4BG278400 Rh4BG282100 Rh4BG282300 Rh4BG282700 Rh4CG176800 Rh4CG297700 Rh4CG298200
rosa_wichuraiana	Rw4G023630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	194
AciI	CCGC	1 cut(s)	80
AcuI	CTGAAG	2 cut(s)	350, 581
AfaI	GTAC	3 cut(s)	141, 202, 614
AfeI	AGCGCT	1 cut(s)	211
AfiI	CCNNNNNNNGG	2 cut(s)	23, 450
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	3 cut(s)	13, 439, 533
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	400
Aor51HI	AGCGCT	1 cut(s)	211
ApeKI	GCWGC	9 cut(s)	77, 356, 359, 362, 413, 587, 590, 593, 596
ArsI	GACNNNNNNTTYG	2 cut(s)	412, 444
AseI	ATTAAT	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	212
AsuHPI	GGTGA	2 cut(s)	28, 527
BarI	GAAGNNNNNNTAC	6 cut(s)	323, 355, 554, 586, 605, 637
BbvI	GCAGC	9 cut(s)	89, 343, 346, 349, 400, 574, 577, 580, 608
BccI	CCATC	2 cut(s)	17, 653
BclI	TGATCA	1 cut(s)	393
BcoDI	GTCTC	1 cut(s)	400
BfaI	CTAG	1 cut(s)	285
BfmI	CTRYAG	2 cut(s)	374, 594
BfoI	RGCGCY	1 cut(s)	213
BisI	GCNGC	9 cut(s)	78, 357, 360, 363, 414, 588, 591, 594, 597
BlsI	GCNGC	9 cut(s)	79, 358, 361, 364, 415, 589, 592, 595, 598
BmsI	GCATC	2 cut(s)	62, 374
BpmI	CTGGAG	1 cut(s)	420
BsaJI	CCNNGG	1 cut(s)	318
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 450
Bse1I	ACTGG	2 cut(s)	202, 403
Bse3DI	GCAATG	3 cut(s)	48, 546, 615
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	3 cut(s)	28, 396, 513
BseLI	CCNNNNNNNGG	2 cut(s)	23, 450
BseMI	GCAATG	3 cut(s)	48, 546, 615
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	2 cut(s)	202, 403
BseXI	GCAGC	9 cut(s)	89, 343, 346, 349, 400, 574, 577, 580, 608
BsgI	GTGCAG	1 cut(s)	399
BslI	CCNNNNNNNGG	2 cut(s)	23, 450
BsmAI	GTCTC	1 cut(s)	400
Bsp143I	GATC	1 cut(s)	393
BspACI	CCGC	1 cut(s)	80
BspCNI	CTCAG	1 cut(s)	80
BspMAI	CTGCAG	1 cut(s)	598
BsrDI	GCAATG	3 cut(s)	48, 546, 615
BsrI	ACTGG	2 cut(s)	202, 403
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	1 cut(s)	393
BssT1I	CCWWGG	1 cut(s)	318
Bst4CI	ACNGT	2 cut(s)	139, 523
BstDEI	CTNAG	1 cut(s)	67
BstF5I	GGATG	3 cut(s)	28, 396, 513
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	1 cut(s)	396
BstMAI	GTCTC	1 cut(s)	400
BstMBI	GATC	1 cut(s)	393
BstMWI	GCNNNNNNNGC	7 cut(s)	77, 353, 362, 584, 593, 596, 626
BstNSI	RCATGY	1 cut(s)	187
BstSFI	CTRYAG	2 cut(s)	374, 594
BstV1I	GCAGC	9 cut(s)	89, 343, 346, 349, 400, 574, 577, 580, 608
BtsCI	GGATG	3 cut(s)	28, 396, 513
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	78, 396
CfoI	GCGC	1 cut(s)	212
Csp6I	GTAC	3 cut(s)	140, 201, 613
CviAII	CATG	3 cut(s)	95, 184, 253
CviQI	GTAC	3 cut(s)	140, 201, 613
DdeI	CTNAG	1 cut(s)	67
DpnI	GATC	1 cut(s)	395
DpnII	GATC	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	318
Eco47III	AGCGCT	1 cut(s)	211
Eco57I	CTGAAG	2 cut(s)	350, 581
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	3 cut(s)	98, 187, 256
FaiI	YATR	9 cut(s)	96, 145, 185, 233, 248, 254, 263, 433, 446
FatI	CATG	3 cut(s)	94, 183, 252
FbaI	TGATCA	1 cut(s)	393
FblI	GTMKAC	1 cut(s)	194
Fnu4HI	GCNGC	9 cut(s)	78, 357, 360, 363, 414, 588, 591, 594, 597
FokI	GGATG	3 cut(s)	35, 403, 520
Fsp4HI	GCNGC	9 cut(s)	78, 357, 360, 363, 414, 588, 591, 594, 597
FspBI	CTAG	1 cut(s)	285
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	9 cut(s)	78, 357, 360, 363, 414, 588, 591, 594, 597
GsuI	CTGGAG	1 cut(s)	420
HaeII	RGCGCY	1 cut(s)	213
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	3 cut(s)	98, 187, 256
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	3 cut(s)	13, 170, 225
HphI	GGTGA	2 cut(s)	28, 527
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	2 cut(s)	330, 561
Hpy188III	TCNNGA	1 cut(s)	533
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	2 cut(s)	544, 631
HpyCH4III	ACNGT	2 cut(s)	139, 523
HpyCH4V	TGCA	5 cut(s)	53, 311, 365, 416, 596
HpyF10VI	GCNNNNNNNGC	7 cut(s)	77, 353, 362, 584, 593, 596, 626
HpyF3I	CTNAG	1 cut(s)	67
Hsp92II	CATG	3 cut(s)	98, 187, 256
HspAI	GCGC	1 cut(s)	210
Ksp22I	TGATCA	1 cut(s)	393
Kzo9I	GATC	1 cut(s)	393
LpnPI	CCDG	8 cut(s)	183, 335, 373, 384, 395, 474, 498, 639
Lsp1109I	GCAGC	9 cut(s)	89, 343, 346, 349, 400, 574, 577, 580, 608
LweI	GCATC	2 cut(s)	62, 374
MaeI	CTAG	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	1 cut(s)	395
MboI	GATC	1 cut(s)	393
MluCI	AATT	3 cut(s)	8, 268, 495
MlyI	GAGTC	1 cut(s)	219
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	4 cut(s)	115, 444, 498, 529
MseI	TTAA	3 cut(s)	188, 267, 655
MslI	CAYNNNNRTG	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	80
MwoI	GCNNNNNNNGC	7 cut(s)	77, 353, 362, 584, 593, 596, 626
NdeII	GATC	1 cut(s)	393
NlaIII	CATG	3 cut(s)	98, 187, 256
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	187
PciI	ACATGT	1 cut(s)	183
PfeI	GAWTC	2 cut(s)	13, 170
PkrI	GCNGC	9 cut(s)	79, 358, 361, 364, 415, 589, 592, 595, 598
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
PscI	ACATGT	1 cut(s)	183
PshBI	ATTAAT	1 cut(s)	267
PstI	CTGCAG	1 cut(s)	598
RsaI	GTAC	3 cut(s)	141, 202, 614
RsaNI	GTAC	3 cut(s)	140, 201, 613
RseI	CAYNNNNRTG	1 cut(s)	188
SaqAI	TTAA	3 cut(s)	188, 267, 655
SatI	GCNGC	9 cut(s)	78, 357, 360, 363, 414, 588, 591, 594, 597
Sau3AI	GATC	1 cut(s)	393
SchI	GAGTC	1 cut(s)	219
SetI	ASST	4 cut(s)	156, 324, 517, 555
SfaNI	GCATC	2 cut(s)	62, 374
SfcI	CTRYAG	2 cut(s)	374, 594
SmiMI	CAYNNNNRTG	1 cut(s)	188
Sse9I	AATT	3 cut(s)	8, 268, 495
SsiI	CCGC	1 cut(s)	80
SspMI	CTAG	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	2 cut(s)	139, 523
TaqI	TCGA	1 cut(s)	56
TasI	AATT	3 cut(s)	8, 268, 495
TatI	WGTACW	1 cut(s)	612
TfiI	GAWTC	2 cut(s)	13, 170
Tru1I	TTAA	3 cut(s)	188, 267, 655
Tru9I	TTAA	3 cut(s)	188, 267, 655
TscAI	CASTG	2 cut(s)	78, 403
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	9 cut(s)	77, 356, 359, 362, 413, 587, 590, 593, 596
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	2 cut(s)	111, 556
TspGWI	ACGGA	2 cut(s)	35, 141
TspRI	CASTG	2 cut(s)	78, 403
VspI	ATTAAT	1 cut(s)	267
XceI	RCATGY	1 cut(s)	187
XmiI	GTMKAC	1 cut(s)	194
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.