Rh3DG007700

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0005537
Physical Location & Seq
Reverse (-)
496758 .. 504165
7408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG007700.1

Sequence Viewer

Length: 777 bp
ATGGCAGAGAAAAATGGCTTGGGTGGCAATACAAATATGGATGAAGGTGAAGCACCACCATCAGAAAGCAAAGCGGAAAAAGCAAACAGAAGCTGTAGCATCACTGAGATACAGGAAAACTCAAAGAAGAAGCAGACCAAAGGAAATGAGACTGTTCCATTTCTCAAGCTGTTTTCATTTGCAGATTCAACTGATATCTTATTGATGACCATCGGCACAGTTGGTGCCATTGGGAATGGTTTGTGTATGCCCATTATGACTGTACTCTTTGGCCAACTGACTGATTCTTTTGGATATAACTACAATAGCAAAGACATAGTTCATGTTGTTTCCAAGGTCTCTCTAAGATATGTCTACCTGGCTTTGGGGGCTGGTGTTGCAGCATTCCTCCAGGTAGCTTGCTGGATGGCCACAGGGGAGCGACAGGCTGCACGCATAAGGAGTTTGTACCTGAAAACCATATTGAGGCAAGAAGTAGCTTTCTTCGATATGGAAACAAACACTGGAGAGGTTGTTGGGAGGATGTCTGGTGATACTGTCTTGATACAAGATGCAATGGGCGAGAAGAAGACACCATCTAAACGTAAACATGACAGTCAGACCGACTCCAAATTGGATTCAGATCCCCTGCGCCCAAAGCCACTAACTAATCCTGTCGATGTCACCATCGCCGCGTGGAGTGGATTTGGATCAAGATCCAGTCCCAACCCTGCTCCGCCAACTCGTCCGTTGAACCAGTATCCATGGCCGCTTTGCCTTAGAGGCGCTTTGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

258

Amino Acids

28.08

Weight (kDa)

8.6

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 70 - 189 5.1e-24 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 224
AccI GTMKAC 1 cut(s) 354
AccII CGCG 1 cut(s) 674
AciI CCGC 4 cut(s) 74, 672, 716, 749
AclWI GGATC 3 cut(s) 617, 690, 697
AcoI YGGCCR 3 cut(s) 271, 408, 746
AfaI GTAC 2 cut(s) 264, 449
AfiI CCNNNNNNNGG 2 cut(s) 364, 465
AgsI TTSAA 2 cut(s) 189, 733
AjnI CCWGG 2 cut(s) 357, 390
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AluBI AGCT 4 cut(s) 93, 169, 398, 479
AluI AGCT 4 cut(s) 93, 169, 398, 479
Alw26I GTCTC 2 cut(s) 143, 343
AlwI GGATC 3 cut(s) 617, 690, 697
AlwNI CAGNNNCTG 1 cut(s) 93
AoxI GGCC 3 cut(s) 271, 408, 746
ApeKI GCWGC 2 cut(s) 380, 428
AspLEI GCGC 2 cut(s) 633, 767
AsuHPI GGTGA 3 cut(s) 59, 542, 655
BalI TGGCCA 2 cut(s) 273, 410
BanI GGYRCC 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 575
BbvI GCAGC 2 cut(s) 392, 415
BccI CCATC 5 cut(s) 67, 218, 400, 583, 674
BciT130I CCWGG 2 cut(s) 359, 392
BciVI GTATCC 1 cut(s) 750
BcoDI GTCTC 2 cut(s) 143, 343
BfaI CTAG 1 cut(s) 775
BfmI CTRYAG 1 cut(s) 94
BfoI RGCGCY 1 cut(s) 768
BfuI GTATCC 1 cut(s) 750
BglI GCCNNNNNGGC 1 cut(s) 762
BisI GCNGC 4 cut(s) 381, 429, 672, 749
BlsI GCNGC 4 cut(s) 382, 430, 673, 750
Bme1390I CCNGG 2 cut(s) 359, 392
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 2 cut(s) 359, 392
BmsI GCATC 2 cut(s) 108, 541
BpiI GAAGAC 1 cut(s) 575
BpmI CTGGAG 2 cut(s) 374, 525
BpuEI CTTGAG 1 cut(s) 149
BsaBI GATNNNNATC 4 cut(s) 209, 621, 688, 694
BsaI GGTCTC 1 cut(s) 343
BsaJI CCNNGG 2 cut(s) 333, 743
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bsc4I CCNNNNNNNGG 2 cut(s) 364, 465
Bse1I ACTGG 3 cut(s) 508, 699, 736
Bse3DI GCAATG 1 cut(s) 561
Bse8I GATNNNNATC 4 cut(s) 209, 621, 688, 694
BseBI CCWGG 2 cut(s) 359, 392
BseDI CCNNGG 2 cut(s) 333, 743
BseGI GGATG 3 cut(s) 46, 411, 528
BseJI GATNNNNATC 4 cut(s) 209, 621, 688, 694
BseLI CCNNNNNNNGG 2 cut(s) 364, 465
BseMI GCAATG 1 cut(s) 561
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 3 cut(s) 508, 699, 736
BseXI GCAGC 2 cut(s) 392, 415
BsgI GTGCAG 1 cut(s) 414
Bsh1236I CGCG 1 cut(s) 674
BshFI GGCC 3 cut(s) 273, 410, 748
BshNI GGYRCC 1 cut(s) 224
BslFI GGGAC 1 cut(s) 687
BslI CCNNNNNNNGG 2 cut(s) 364, 465
BsmAI GTCTC 2 cut(s) 143, 343
BsmFI GGGAC 1 cut(s) 687
BsmI GAATGC 1 cut(s) 383
BsnI GGCC 3 cut(s) 273, 410, 748
Bso31I GGTCTC 1 cut(s) 343
Bsp143I GATC 4 cut(s) 622, 689, 695, 771
Bsp19I CCATGG 1 cut(s) 743
BspACI CCGC 4 cut(s) 74, 672, 716, 749
BspANI GGCC 3 cut(s) 273, 410, 748
BspCNI CTCAG 1 cut(s) 97
BspFNI CGCG 1 cut(s) 674
BspLI GGNNCC 1 cut(s) 226
BspPI GGATC 3 cut(s) 617, 690, 697
BspT107I GGYRCC 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 343
BsrDI GCAATG 1 cut(s) 561
BsrI ACTGG 3 cut(s) 508, 699, 736
BssECI CCNNGG 2 cut(s) 333, 743
BssMI GATC 4 cut(s) 622, 689, 695, 771
BssT1I CCWWGG 2 cut(s) 333, 743
Bst2UI CCWGG 2 cut(s) 359, 392
Bst4CI ACNGT 5 cut(s) 154, 220, 262, 538, 596
BstC8I GCNNGC 2 cut(s) 400, 433
BstDEI CTNAG 3 cut(s) 105, 344, 758
BstDSI CCRYGG 1 cut(s) 743
BstF5I GGATG 3 cut(s) 46, 411, 528
BstFNI CGCG 1 cut(s) 674
BstH2I RGCGCY 1 cut(s) 768
BstHHI GCGC 2 cut(s) 633, 767
BstKTI GATC 4 cut(s) 625, 692, 698, 774
BstMAI GTCTC 2 cut(s) 143, 343
BstMBI GATC 4 cut(s) 622, 689, 695, 771
BstMWI GCNNNNNNNGC 6 cut(s) 24, 80, 368, 377, 637, 762
BstNI CCWGG 2 cut(s) 359, 392
BstSCI CCNGG 2 cut(s) 357, 390
BstSFI CTRYAG 1 cut(s) 94
BstUI CGCG 1 cut(s) 674
BstV1I GCAGC 2 cut(s) 392, 415
BstV2I GAAGAC 1 cut(s) 575
BstX2I RGATCY 2 cut(s) 622, 695
BstYI RGATCY 2 cut(s) 622, 695
BsuI GTATCC 1 cut(s) 750
BsuRI GGCC 3 cut(s) 273, 410, 748
BtgI CCRYGG 1 cut(s) 743
BtgZI GCGATG 1 cut(s) 652
BtsCI GGATG 3 cut(s) 46, 411, 528
BtsIMutI CAGTG 2 cut(s) 102, 501
Cac8I GCNNGC 2 cut(s) 400, 433
CaiI CAGNNNCTG 1 cut(s) 93
CfoI GCGC 2 cut(s) 633, 767
Csp6I GTAC 2 cut(s) 263, 448
CviAII CATG 3 cut(s) 323, 590, 744
CviQI GTAC 2 cut(s) 263, 448
DdeI CTNAG 3 cut(s) 105, 344, 758
DpnI GATC 4 cut(s) 624, 691, 697, 773
DpnII GATC 4 cut(s) 622, 689, 695, 771
EaeI YGGCCR 3 cut(s) 271, 408, 746
EciI GGCGGA 1 cut(s) 705
Eco130I CCWWGG 2 cut(s) 333, 743
Eco31I GGTCTC 1 cut(s) 343
Eco32I GATATC 1 cut(s) 196
EcoRII CCWGG 2 cut(s) 357, 390
EcoRV GATATC 1 cut(s) 196
EcoT14I CCWWGG 2 cut(s) 333, 743
ErhI CCWWGG 2 cut(s) 333, 743
FaeI CATG 3 cut(s) 326, 593, 747
FaqI GGGAC 1 cut(s) 687
FatI CATG 3 cut(s) 322, 589, 743
FblI GTMKAC 1 cut(s) 354
Fnu4HI GCNGC 4 cut(s) 381, 429, 672, 749
FokI GGATG 3 cut(s) 53, 418, 535
Fsp4HI GCNGC 4 cut(s) 381, 429, 672, 749
FspBI CTAG 1 cut(s) 775
GlaI GCGC 2 cut(s) 632, 766
GluI GCNGC 4 cut(s) 381, 429, 672, 749
GsuI CTGGAG 2 cut(s) 374, 525
HaeII RGCGCY 1 cut(s) 768
HaeIII GGCC 3 cut(s) 273, 410, 748
HhaI GCGC 2 cut(s) 633, 767
Hin1II CATG 3 cut(s) 326, 593, 747
Hin6I GCGC 2 cut(s) 631, 765
HinP1I GCGC 2 cut(s) 631, 765
HinfI GANTC 4 cut(s) 185, 284, 605, 617
HphI GGTGA 3 cut(s) 59, 542, 655
Hpy166II GTNNAC 2 cut(s) 355, 587
Hpy188I TCNGA 3 cut(s) 64, 600, 622
Hpy188III TCNNGA 2 cut(s) 541, 693
Hpy8I GTNNAC 2 cut(s) 355, 587
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 5 cut(s) 154, 220, 262, 538, 596
HpyCH4IV ACGT 1 cut(s) 583
HpyCH4V TGCA 4 cut(s) 182, 380, 431, 554
HpyF10VI GCNNNNNNNGC 6 cut(s) 24, 80, 368, 377, 637, 762
HpyF3I CTNAG 3 cut(s) 105, 344, 758
HpySE526I ACGT 1 cut(s) 583
Hsp92II CATG 3 cut(s) 326, 593, 747
HspAI GCGC 2 cut(s) 631, 765
Kzo9I GATC 4 cut(s) 622, 689, 695, 771
LmnI GCTCC 2 cut(s) 418, 718
Lsp1109I GCAGC 2 cut(s) 392, 415
LweI GCATC 2 cut(s) 108, 541
MaeI CTAG 1 cut(s) 775
MaeII ACGT 1 cut(s) 583
MaeIII GTNAC 1 cut(s) 661
MalI GATC 4 cut(s) 624, 691, 697, 773
MboI GATC 4 cut(s) 622, 689, 695, 771
MboII GAAGA 4 cut(s) 139, 475, 577, 580
MflI RGATCY 2 cut(s) 622, 695
MlsI TGGCCA 2 cut(s) 273, 410
MluCI AATT 1 cut(s) 611
MluNI TGGCCA 2 cut(s) 273, 410
MlyI GAGTC 1 cut(s) 599
MnlI CCTC 5 cut(s) 398, 459, 502, 513, 755
Mox20I TGGCCA 2 cut(s) 273, 410
MscI TGGCCA 2 cut(s) 273, 410
Msp20I TGGCCA 2 cut(s) 273, 410
MspR9I CCNGG 2 cut(s) 359, 392
Mva1269I GAATGC 1 cut(s) 383
MvaI CCWGG 2 cut(s) 359, 392
MvnI CGCG 1 cut(s) 674
MwoI GCNNNNNNNGC 6 cut(s) 24, 80, 368, 377, 637, 762
NcoI CCATGG 1 cut(s) 743
NdeII GATC 4 cut(s) 622, 689, 695, 771
NlaIII CATG 3 cut(s) 326, 593, 747
NlaIV GGNNCC 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 661
PctI GAATGC 1 cut(s) 383
PfeI GAWTC 3 cut(s) 185, 284, 617
PkrI GCNGC 4 cut(s) 382, 430, 673, 750
PleI GAGTC 1 cut(s) 599
PpsI GAGTC 1 cut(s) 599
Psp6I CCWGG 2 cut(s) 357, 390
PspGI CCWGG 2 cut(s) 357, 390
PspN4I GGNNCC 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 93
PsuI RGATCY 2 cut(s) 622, 695
RsaI GTAC 2 cut(s) 264, 449
RsaNI GTAC 2 cut(s) 263, 448
SatI GCNGC 4 cut(s) 381, 429, 672, 749
Sau3AI GATC 4 cut(s) 622, 689, 695, 771
SchI GAGTC 1 cut(s) 599
ScrFI CCNGG 2 cut(s) 359, 392
SfaNI GCATC 2 cut(s) 108, 541
SfcI CTRYAG 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 1 cut(s) 611
SsiI CCGC 4 cut(s) 74, 672, 716, 749
SspMI CTAG 1 cut(s) 775
StyD4I CCNGG 2 cut(s) 357, 390
StyI CCWWGG 2 cut(s) 333, 743
TaaI ACNGT 5 cut(s) 154, 220, 262, 538, 596
TaiI ACGT 1 cut(s) 586
TaqI TCGA 2 cut(s) 486, 657
TaqII GACCGA 1 cut(s) 617
TasI AATT 1 cut(s) 611
TatI WGTACW 1 cut(s) 262
TauI GCSGC 2 cut(s) 674, 751
TfiI GAWTC 3 cut(s) 185, 284, 617
TscAI CASTG 2 cut(s) 109, 508
TseFI GTSAC 1 cut(s) 661
TseI GCWGC 2 cut(s) 380, 428
Tsp45I GTSAC 1 cut(s) 661
TspDTI ATGAA 3 cut(s) 57, 165, 311
TspGWI ACGGA 1 cut(s) 717
TspRI CASTG 2 cut(s) 109, 508
XmiI GTMKAC 1 cut(s) 354
XspI CTAG 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.