Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005537

Physical Location & Seq

Genomic Coordinates Forward (+)

52919600 .. 52920486

Gene Structure 887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39665

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTATGGTGTTTGTTGCTATTTCTTCTCTTTAGTTTTTCTCTTGTTAGCATGCATTAACTGGCCGGTCACTTGGTTTCTTTCTCTTCGTCTTTCATTTCAATCCTTGTTTCTTGTTAGTTTCTCTCTTTCACTTCAAACCAGATCTTTATCTATTTATTTTCAACCATGCAGCTGTGATCTTATCACTCAAGTGGGAAGCATGGCTGAGGAGAATCCTTCAGTTGGAGATGTAATCACCAAGCAATATACTGCACCAAATAAGCGCTCAGCAGTGGCGGCGGTTTCCAAAGAATGTGAACAAAATATAAGCAAAAGCAAGGAGGATGGAACAAATACAGTACCATATTACAAGCTTTTCTCCTTTGCTGACTCCCTGGATTACCTGTTAATGTCTGTTGGTACAATCAGCGCCATTGGAAATGGACTCTGTATGCCTCTAATGACCATTGTCACGGGAGATGTGATTGATTCATTTGGAGAAATTAGGAACATCAAGGAAGTGTCTAATGCAGTTTCCAAGGTAGCTTTGAAGTTCGTTTACTTGGCTCTGGGGGCTGCTGCTGCATCATTTCTACGTAAGTACATTGCATGCGTTCCCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

201

Amino Acids

22.1

Weight (kDa)

8.08

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00610
malus_domestica	MD13G1139000.v1.1 MD17G1284600.v1.1
pyrus_communis	pycom16g11890
rosa_chinensis	RchiOBHm_Chr4g0427741
rosa_multiflora	Rmu_co8181678.1_g000001 Rmu_sc0000066.1_g000023 Rmu_sc0000066.1_g000038 Rmu_sc0003399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367600 Rroxscaffold_5G00369430 Rroxscaffold_5G00369490
rosa_samantha	Rh3AG272000 Rh3AG272500 Rh3DG007700 Rh3DG214800 Rh4AG272500 Rh4AG272600 Rh4AG276400 Rh4BG278200 Rh4BG278300 Rh4BG278400 Rh4BG282100 Rh4BG282300 Rh4BG282700 Rh4CG176800 Rh4CG297700 Rh4CG298200
rosa_wichuraiana	Rw4G023630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	278, 281, 601
AcoI	YGGCCR	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	3 cut(s)	342, 403, 584
AfeI	AGCGCT	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	224
AgsI	TTSAA	4 cut(s)	101, 137, 164, 532
AjnI	CCWGG	1 cut(s)	375
AleI	CACNNNNGTG	1 cut(s)	191
AluBI	AGCT	3 cut(s)	174, 355, 527
AluI	AGCT	3 cut(s)	174, 355, 527
Aor51HI	AGCGCT	1 cut(s)	266
AoxI	GGCC	1 cut(s)	62
ApeKI	GCWGC	4 cut(s)	171, 557, 560, 563
AspLEI	GCGC	2 cut(s)	267, 413
AsuHPI	GGTGA	1 cut(s)	229
BarI	GAAGNNNNNNTAC	2 cut(s)	524, 556
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	4 cut(s)	183, 544, 547, 550
BccI	CCATC	1 cut(s)	320
BciT130I	CCWGG	1 cut(s)	377
BfoI	RGCGCY	2 cut(s)	268, 414
BglII	AGATCT	1 cut(s)	143
BisI	GCNGC	5 cut(s)	172, 279, 558, 561, 564
BlpI	GCTNAGC	1 cut(s)	268
BlsI	GCNGC	5 cut(s)	173, 280, 559, 562, 565
Bme1390I	CCNGG	1 cut(s)	377
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	1 cut(s)	575
BoxI	GACNNNNGTC	1 cut(s)	449
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	268
BpuEI	CTTGAG	1 cut(s)	174
BsaAI	YACGTR	1 cut(s)	578
BsaBI	GATNNNNATC	1 cut(s)	148
BsaJI	CCNNGG	2 cut(s)	375, 519
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	585
Bse8I	GATNNNNATC	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	377
BseDI	CCNNGG	2 cut(s)	375, 519
BseGI	GGATG	1 cut(s)	331
BseJI	GATNNNNATC	1 cut(s)	148
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	2 cut(s)	198, 282
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	4 cut(s)	183, 544, 547, 550
BsgI	GTGCAG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	64
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	224
BsnI	GGCC	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	143, 178
Bsp1720I	GCTNAGC	1 cut(s)	268
BspACI	CCGC	3 cut(s)	278, 281, 601
BspANI	GGCC	1 cut(s)	64
BspCNI	CTCAG	2 cut(s)	199, 281
BsrDI	GCAATG	1 cut(s)	585
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	375, 519
BssMI	GATC	2 cut(s)	143, 178
BssT1I	CCWWGG	1 cut(s)	519
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	1 cut(s)	340
Bst6I	CTCTTC	1 cut(s)	90
BstBAI	YACGTR	1 cut(s)	578
BstC8I	GCNNGC	2 cut(s)	52, 592
BstDEI	CTNAG	2 cut(s)	207, 268
BstF5I	GGATG	1 cut(s)	331
BstH2I	RGCGCY	2 cut(s)	268, 414
BstHHI	GCGC	2 cut(s)	267, 413
BstKTI	GATC	2 cut(s)	146, 181
BstMBI	GATC	2 cut(s)	143, 178
BstMWI	GCNNNNNNNGC	4 cut(s)	278, 554, 563, 600
BstNI	CCWGG	1 cut(s)	377
BstNSI	RCATGY	2 cut(s)	54, 594
BstPAI	GACNNNNGTC	1 cut(s)	449
BstSCI	CCNGG	1 cut(s)	375
BstSNI	TACGTA	1 cut(s)	578
BstV1I	GCAGC	4 cut(s)	183, 544, 547, 550
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	331
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	2 cut(s)	52, 592
CfoI	GCGC	2 cut(s)	267, 413
Cfr10I	RCCGGY	1 cut(s)	64
Csp6I	GTAC	3 cut(s)	341, 402, 583
CviAII	CATG	4 cut(s)	51, 168, 202, 591
CviJI	RGCY	7 cut(s)	64, 174, 206, 355, 527, 548, 557
CviKI_1	RGCY	7 cut(s)	64, 174, 206, 355, 527, 548, 557
CviQI	GTAC	3 cut(s)	341, 402, 583
DdeI	CTNAG	2 cut(s)	207, 268
DpnI	GATC	2 cut(s)	145, 180
DpnII	GATC	2 cut(s)	143, 178
EaeI	YGGCCR	1 cut(s)	62
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco105I	TACGTA	1 cut(s)	578
Eco130I	CCWWGG	1 cut(s)	519
Eco47III	AGCGCT	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	375
EcoT14I	CCWWGG	1 cut(s)	519
EcoT22I	ATGCAT	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	519
FaeI	CATG	4 cut(s)	54, 171, 205, 594
FaiI	YATR	9 cut(s)	6, 52, 169, 203, 249, 308, 346, 434, 592
FatI	CATG	4 cut(s)	50, 167, 201, 590
Fnu4HI	GCNGC	5 cut(s)	172, 279, 558, 561, 564
FokI	GGATG	1 cut(s)	338
Fsp4HI	GCNGC	5 cut(s)	172, 279, 558, 561, 564
GlaI	GCGC	2 cut(s)	266, 412
GluI	GCNGC	5 cut(s)	172, 279, 558, 561, 564
HaeII	RGCGCY	2 cut(s)	268, 414
HaeIII	GGCC	1 cut(s)	64
HapII	CCGG	1 cut(s)	65
HhaI	GCGC	2 cut(s)	267, 413
Hin1II	CATG	4 cut(s)	54, 171, 205, 594
Hin6I	GCGC	2 cut(s)	265, 411
HinP1I	GCGC	2 cut(s)	265, 411
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	4 cut(s)	214, 371, 426, 470
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	2 cut(s)	299, 541
Hpy8I	GTNNAC	2 cut(s)	299, 541
HpyAV	CCTTC	1 cut(s)	228
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	1 cut(s)	577
HpyCH4V	TGCA	6 cut(s)	54, 171, 254, 512, 566, 590
HpyF10VI	GCNNNNNNNGC	4 cut(s)	278, 554, 563, 600
HpyF3I	CTNAG	2 cut(s)	207, 268
HpySE526I	ACGT	1 cut(s)	577
Hsp92II	CATG	4 cut(s)	54, 171, 205, 594
HspAI	GCGC	2 cut(s)	265, 411
Kzo9I	GATC	2 cut(s)	143, 178
LpnPI	CCDG	7 cut(s)	46, 78, 154, 362, 389, 398, 536
Lsp1109I	GCAGC	4 cut(s)	183, 544, 547, 550
LweI	GCATC	1 cut(s)	575
MaeII	ACGT	1 cut(s)	577
MaeIII	GTNAC	2 cut(s)	67, 451
MalI	GATC	2 cut(s)	145, 180
MboI	GATC	2 cut(s)	143, 178
MboII	GAAGA	2 cut(s)	16, 77
MflI	RGATCY	1 cut(s)	143
MluCI	AATT	1 cut(s)	483
MlyI	GAGTC	2 cut(s)	365, 420
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	3 cut(s)	202, 316, 447
Mph1103I	ATGCAT	1 cut(s)	56
MseI	TTAA	2 cut(s)	57, 389
MslI	CAYNNNNRTG	1 cut(s)	191
MspA1I	CMGCKG	2 cut(s)	174, 603
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	4 cut(s)	278, 554, 563, 600
NdeII	GATC	2 cut(s)	143, 178
NlaIII	CATG	4 cut(s)	54, 171, 205, 594
NmuCI	GTSAC	2 cut(s)	67, 451
NsiI	ATGCAT	1 cut(s)	56
NspI	RCATGY	2 cut(s)	54, 594
OliI	CACNNNNGTG	1 cut(s)	191
PaeI	GCATGC	2 cut(s)	54, 594
PfeI	GAWTC	2 cut(s)	214, 470
PkrI	GCNGC	5 cut(s)	173, 280, 559, 562, 565
PleI	GAGTC	2 cut(s)	365, 420
PpsI	GAGTC	2 cut(s)	365, 420
Ppu21I	YACGTR	1 cut(s)	578
PshAI	GACNNNNGTC	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PsuI	RGATCY	1 cut(s)	143
PvuII	CAGCTG	1 cut(s)	174
RsaI	GTAC	3 cut(s)	342, 403, 584
RsaNI	GTAC	3 cut(s)	341, 402, 583
RseI	CAYNNNNRTG	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	57, 389
SatI	GCNGC	5 cut(s)	172, 279, 558, 561, 564
Sau3AI	GATC	2 cut(s)	143, 178
SchI	GAGTC	2 cut(s)	365, 420
ScrFI	CCNGG	1 cut(s)	377
SetI	ASST	6 cut(s)	176, 357, 387, 525, 529, 580
SfaNI	GCATC	1 cut(s)	575
SmiMI	CAYNNNNRTG	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
SnaBI	TACGTA	1 cut(s)	578
SphI	GCATGC	2 cut(s)	54, 594
Sse9I	AATT	1 cut(s)	483
SsiI	CCGC	3 cut(s)	278, 281, 601
StyD4I	CCNGG	1 cut(s)	375
StyI	CCWWGG	1 cut(s)	519
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	1 cut(s)	580
TasI	AATT	1 cut(s)	483
TatI	WGTACW	1 cut(s)	582
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	2 cut(s)	214, 470
Tru1I	TTAA	2 cut(s)	57, 389
Tru9I	TTAA	2 cut(s)	57, 389
TscAI	CASTG	1 cut(s)	279
TseFI	GTSAC	2 cut(s)	67, 451
TseI	GCWGC	4 cut(s)	171, 557, 560, 563
Tsp45I	GTSAC	2 cut(s)	67, 451
TspDTI	ATGAA	2 cut(s)	84, 462
TspRI	CASTG	1 cut(s)	279
XceI	RCATGY	2 cut(s)	54, 594
Zsp2I	ATGCAT	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.