Rh3DG214800

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0005537
Physical Location & Seq
Reverse (-)
19782420 .. 19785327
2908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG214800.1

Sequence Viewer

Length: 492 bp
ATGGAACGAGGAGGAGAGATGACAATGAATAAGAAAAAAGCAAGTGATCAAGACAAGCAGAGTGTTCCATTTTACAAGCTGTTTATGTTCGCTGACCAATACGACATCACGTTGATGATCATCGGAAGTTTAAGTGCGATTGGAAATGGGCTATCACAGCCACTCATGACGCTGGTCTTCGGTGGTCTTATCAATTCTTTTGGAGCTACCGACCCAGCTCATATTGTTCCTACTGTTTCTCAAGTGTCTCTAAAGTTTTTGTACTTGGCTATTGGTACAGGCCTTGCTGCATTTTTGCAGGTCTCATGTTGGATGGTGACTGGGGAAAGACAAGCCACTCGAATTCGAGGCTTGTACTTGAAAACAATACTAAGACAGGATATTGGATTTTTCGACACTCAAACTAACACCGGAGAGATCATTGGGAGAATGTCAGGGGACACCATTCTCATTCAAAATGCCATGGGCGAAAAGGAACTCACGACGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

163

Amino Acids

17.88

Weight (kDa)

6.57

Isoelectric Point (pI)

33.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 39 - 158 7.3e-25 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 289
AcsI RAATTY 1 cut(s) 342
AfaI GTAC 3 cut(s) 263, 277, 356
AgsI TTSAA 2 cut(s) 361, 455
AluBI AGCT 3 cut(s) 79, 206, 218
AluI AGCT 3 cut(s) 79, 206, 218
Alw26I GTCTC 2 cut(s) 252, 307
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 287
ApoI RAATTY 1 cut(s) 342
AsuHPI GGTGA 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 169
BbvI GCAGC 1 cut(s) 274
BccI CCATC 1 cut(s) 307
BclI TGATCA 2 cut(s) 46, 117
BcoDI GTCTC 2 cut(s) 252, 307
BfuAI ACCTGC 1 cut(s) 289
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
BmrI ACTGGG 1 cut(s) 330
BmuI ACTGGG 1 cut(s) 330
BoxI GACNNNNGTC 1 cut(s) 173
BpiI GAAGAC 1 cut(s) 169
BpuEI CTTGAG 1 cut(s) 225
BsaBI GATNNNNATC 1 cut(s) 119
BsaI GGTCTC 1 cut(s) 307
BsaJI CCNNGG 1 cut(s) 462
BsaWI WCCGGW 1 cut(s) 410
Bse1I ACTGG 1 cut(s) 325
Bse8I GATNNNNATC 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 462
BseGI GGATG 1 cut(s) 318
BseJI GATNNNNATC 1 cut(s) 119
BseNI ACTGG 1 cut(s) 325
BseRI GAGGAG 2 cut(s) 24, 27
BseXI GCAGC 1 cut(s) 274
BseYI CCCAGC 1 cut(s) 214
BshFI GGCC 1 cut(s) 282
BsiSI CCGG 1 cut(s) 411
BslFI GGGAC 1 cut(s) 452
BsmAI GTCTC 2 cut(s) 252, 307
BsmFI GGGAC 1 cut(s) 452
BsnI GGCC 1 cut(s) 282
Bso31I GGTCTC 1 cut(s) 307
Bsp143I GATC 3 cut(s) 46, 117, 417
Bsp19I CCATGG 1 cut(s) 462
BspANI GGCC 1 cut(s) 282
BspHI TCATGA 1 cut(s) 165
BspMI ACCTGC 1 cut(s) 289
BspTNI GGTCTC 1 cut(s) 307
BsrI ACTGG 1 cut(s) 325
BssECI CCNNGG 1 cut(s) 462
BssMI GATC 3 cut(s) 46, 117, 417
BssT1I CCWWGG 1 cut(s) 462
Bst4CI ACNGT 1 cut(s) 235
BstDEI CTNAG 1 cut(s) 371
BstDSI CCRYGG 1 cut(s) 462
BstF5I GGATG 1 cut(s) 318
BstKTI GATC 3 cut(s) 49, 120, 420
BstMAI GTCTC 2 cut(s) 252, 307
BstMBI GATC 3 cut(s) 46, 117, 417
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstPAI GACNNNNGTC 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 274
BstV2I GAAGAC 1 cut(s) 169
BsuRI GGCC 1 cut(s) 282
BtgI CCRYGG 1 cut(s) 462
BtsCI GGATG 1 cut(s) 318
BveI ACCTGC 1 cut(s) 289
CciI TCATGA 1 cut(s) 165
CseI GACGC 1 cut(s) 178
Csp6I GTAC 3 cut(s) 262, 276, 355
CviAII CATG 3 cut(s) 166, 306, 463
CviJI RGCY 9 cut(s) 79, 151, 160, 206, 218, 269, 282, 335, 351
CviKI_1 RGCY 9 cut(s) 79, 151, 160, 206, 218, 269, 282, 335, 351
CviQI GTAC 3 cut(s) 262, 276, 355
DdeI CTNAG 1 cut(s) 371
DpnI GATC 3 cut(s) 48, 119, 419
DpnII GATC 3 cut(s) 46, 117, 417
Eco130I CCWWGG 1 cut(s) 462
Eco147I AGGCCT 1 cut(s) 282
Eco31I GGTCTC 1 cut(s) 307
EcoRI GAATTC 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 462
ErhI CCWWGG 1 cut(s) 462
FaeI CATG 3 cut(s) 169, 309, 466
FaiI YATR 5 cut(s) 86, 167, 222, 307, 464
FaqI GGGAC 1 cut(s) 452
FatI CATG 3 cut(s) 165, 305, 462
FbaI TGATCA 2 cut(s) 46, 117
Fnu4HI GCNGC 1 cut(s) 288
FokI GGATG 1 cut(s) 325
Fsp4HI GCNGC 1 cut(s) 288
GluI GCNGC 1 cut(s) 288
GsaI CCCAGC 1 cut(s) 218
HaeIII GGCC 1 cut(s) 282
HapII CCGG 1 cut(s) 411
HgaI GACGC 1 cut(s) 178
Hin1II CATG 3 cut(s) 169, 309, 466
HpaII CCGG 1 cut(s) 411
HphI GGTGA 1 cut(s) 328
Hpy188I TCNGA 1 cut(s) 125
Hpy188III TCNNGA 3 cut(s) 50, 166, 481
Hpy99I CGWCG 1 cut(s) 487
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 2 cut(s) 290, 298
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpyF3I CTNAG 1 cut(s) 371
HpySE526I ACGT 1 cut(s) 110
Hsp92II CATG 3 cut(s) 169, 309, 466
Ksp22I TGATCA 2 cut(s) 46, 117
Kzo9I GATC 3 cut(s) 46, 117, 417
LmnI GCTCC 1 cut(s) 203
LpnPI CCDG 8 cut(s) 158, 228, 264, 284, 306, 362, 420, 424
Lsp1109I GCAGC 1 cut(s) 274
MaeII ACGT 1 cut(s) 110
MaeIII GTNAC 1 cut(s) 316
MalI GATC 3 cut(s) 48, 119, 419
MboI GATC 3 cut(s) 46, 117, 417
MboII GAAGA 1 cut(s) 169
MluCI AATT 3 cut(s) 193, 342, 487
MmeI TCCRAC 1 cut(s) 290
MnlI CCTC 2 cut(s) 5, 341
MseI TTAA 1 cut(s) 131
MslI CAYNNNNRTG 1 cut(s) 113
MspI CCGG 1 cut(s) 411
MwoI GCNNNNNNNGC 1 cut(s) 157
NcoI CCATGG 1 cut(s) 462
NdeII GATC 3 cut(s) 46, 117, 417
NlaIII CATG 3 cut(s) 169, 309, 466
NmuCI GTSAC 1 cut(s) 316
PagI TCATGA 1 cut(s) 165
PceI AGGCCT 1 cut(s) 282
PkrI GCNGC 1 cut(s) 289
PshAI GACNNNNGTC 1 cut(s) 173
PspFI CCCAGC 1 cut(s) 214
RsaI GTAC 3 cut(s) 263, 277, 356
RsaNI GTAC 3 cut(s) 262, 276, 355
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 1 cut(s) 131
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 3 cut(s) 46, 117, 417
SetI ASST 5 cut(s) 81, 113, 208, 220, 303
SmiMI CAYNNNNRTG 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 240
SmoI CTYRAG 1 cut(s) 240
Sse9I AATT 3 cut(s) 193, 342, 487
SseBI AGGCCT 1 cut(s) 282
StuI AGGCCT 1 cut(s) 282
StyI CCWWGG 1 cut(s) 462
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 1 cut(s) 113
TaqI TCGA 3 cut(s) 340, 346, 393
TasI AATT 3 cut(s) 193, 342, 487
TatI WGTACW 2 cut(s) 261, 354
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 1 cut(s) 41
XapI RAATTY 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.