FvH4_6g08980

GTPase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002828
Physical Location & Seq
Forward (+)
5303005 .. 5303226
222 bp
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UTR
Exon/CDS
Intron
FvH4_6g08980.t1

Sequence Viewer

Length: 222 bp
ATGGACTTCTACAGTGAACTCACCACCGCCACGCGCCTCAGCAATGACACGTTGATCCTCGTCAACGCCGTTGAGGGCGTCCACATCCAGACGCACGCCGTCCTCCGCCAGGCTTGGATCGAGAAGCTCACGCCGTGCCTGGTGATCAACAAGATCGATCGGCTCATCTCCGAGCTTGAGATGAGCCTTAGGGAGGCCTACATTAGGTTGTTGCGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko04152 ko04921 map03008 map04152 map04921
Pfam Domains
Protein Families
EFG_C EFG_II EFG_IV GTP_EFTU GTP_EFTU_D2

Protein Analysis

74

Amino Acids

8.45

Weight (kDa)

6.05

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 2 - 70 4.5e-12 Elongation factor Tu GTP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 34
AciI CCGC 3 cut(s) 27, 106, 214
AclWI GGATC 2 cut(s) 49, 125
AcyI GRCGYC 1 cut(s) 78
AdeI CACNNNGTG 1 cut(s) 135
AfiI CCNNNNNNNGG 3 cut(s) 109, 193, 204
AflIII ACRYGT 1 cut(s) 48
AjnI CCWGG 2 cut(s) 108, 138
AluBI AGCT 2 cut(s) 127, 175
AluI AGCT 2 cut(s) 127, 175
AlwI GGATC 2 cut(s) 49, 125
AoxI GGCC 1 cut(s) 195
AspLEI GCGC 1 cut(s) 36
AsuHPI GGTGA 2 cut(s) 13, 154
AxyI CCTNAGG 1 cut(s) 188
BbvCI CCTCAGC 1 cut(s) 38
BceAI ACGGC 3 cut(s) 53, 83, 118
BciT130I CCWGG 2 cut(s) 110, 140
BclI TGATCA 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 10
Bme1390I CCNGG 2 cut(s) 110, 140
BmrFI CCNGG 2 cut(s) 110, 140
Bpu10I CCTNAGC 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 197
Bsa29I ATCGAT 1 cut(s) 156
BsaHI GRCGYC 1 cut(s) 78
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 193, 204
Bse21I CCTNAGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 49
BseBI CCWGG 2 cut(s) 110, 140
BseCI ATCGAT 1 cut(s) 156
BseGI GGATG 1 cut(s) 84
BseLI CCNNNNNNNGG 3 cut(s) 109, 193, 204
BseMI GCAATG 1 cut(s) 49
BseMII CTCAG 1 cut(s) 52
Bsh1236I CGCG 1 cut(s) 34
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 1 cut(s) 197
BshVI ATCGAT 1 cut(s) 156
BsiEI CGRYCG 1 cut(s) 160
BslI CCNNNNNNNGG 3 cut(s) 109, 193, 204
BsnI GGCC 1 cut(s) 197
Bsp143I GATC 5 cut(s) 54, 117, 144, 153, 157
BspACI CCGC 3 cut(s) 27, 106, 214
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 1 cut(s) 51
BspDI ATCGAT 1 cut(s) 156
BspFNI CGCG 1 cut(s) 34
BspPI GGATC 2 cut(s) 49, 125
BsrDI GCAATG 1 cut(s) 49
BssMI GATC 5 cut(s) 54, 117, 144, 153, 157
BssNI GRCGYC 1 cut(s) 78
Bst2UI CCWGG 2 cut(s) 110, 140
Bst4CI ACNGT 1 cut(s) 14
BstACI GRCGYC 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 2 cut(s) 38, 188
BstENI CCTNNNNNAGG 3 cut(s) 107, 191, 202
BstF5I GGATG 1 cut(s) 84
BstFNI CGCG 1 cut(s) 34
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 5 cut(s) 57, 120, 147, 156, 160
BstMBI GATC 5 cut(s) 54, 117, 144, 153, 157
BstMCI CGRYCG 1 cut(s) 160
BstNI CCWGG 2 cut(s) 110, 140
BstSCI CCNGG 2 cut(s) 108, 138
BstSFI CTRYAG 1 cut(s) 10
BstUI CGCG 1 cut(s) 34
Bsu15I ATCGAT 1 cut(s) 156
Bsu36I CCTNAGG 1 cut(s) 188
BsuRI GGCC 1 cut(s) 197
BsuTUI ATCGAT 1 cut(s) 156
BtsCI GGATG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 96
CfoI GCGC 1 cut(s) 36
ClaI ATCGAT 1 cut(s) 156
CseI GACGC 2 cut(s) 67, 100
CviJI RGCY 6 cut(s) 113, 127, 163, 175, 186, 197
CviKI_1 RGCY 6 cut(s) 113, 127, 163, 175, 186, 197
DdeI CTNAG 2 cut(s) 38, 188
DpnI GATC 5 cut(s) 56, 119, 146, 155, 159
DpnII GATC 5 cut(s) 54, 117, 144, 153, 157
DraIII CACNNNGTG 1 cut(s) 135
EciI GGCGGA 1 cut(s) 95
Eco147I AGGCCT 1 cut(s) 197
Eco81I CCTNAGG 1 cut(s) 188
EcoNI CCTNNNNNAGG 3 cut(s) 107, 191, 202
EcoRII CCWGG 2 cut(s) 108, 138
FbaI TGATCA 1 cut(s) 144
FokI GGATG 1 cut(s) 71
GlaI GCGC 1 cut(s) 35
HaeIII GGCC 1 cut(s) 197
HgaI GACGC 2 cut(s) 67, 100
HhaI GCGC 1 cut(s) 36
Hin1I GRCGYC 1 cut(s) 78
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HphI GGTGA 2 cut(s) 13, 154
Hpy166II GTNNAC 3 cut(s) 17, 64, 82
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 2 cut(s) 88, 121
Hpy8I GTNNAC 3 cut(s) 17, 64, 82
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4IV ACGT 1 cut(s) 50
HpyF3I CTNAG 2 cut(s) 38, 188
HpySE526I ACGT 1 cut(s) 50
Hsp92I GRCGYC 1 cut(s) 78
HspAI GCGC 1 cut(s) 34
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 5 cut(s) 54, 117, 144, 153, 157
LpnPI CCDG 5 cut(s) 95, 101, 122, 125, 152
MaeII ACGT 1 cut(s) 50
MalI GATC 5 cut(s) 56, 119, 146, 155, 159
MboI GATC 5 cut(s) 54, 117, 144, 153, 157
MnlI CCTC 5 cut(s) 47, 67, 68, 113, 187
MspR9I CCNGG 2 cut(s) 110, 140
MvaI CCWGG 2 cut(s) 110, 140
MvnI CGCG 1 cut(s) 34
NdeII GATC 5 cut(s) 54, 117, 144, 153, 157
PceI AGGCCT 1 cut(s) 197
PcsI WCGNNNNNNNCGW 1 cut(s) 66
Ple19I CGATCG 1 cut(s) 160
Psp6I CCWGG 2 cut(s) 108, 138
PspGI CCWGG 2 cut(s) 108, 138
PvuI CGATCG 1 cut(s) 160
Sau3AI GATC 5 cut(s) 54, 117, 144, 153, 157
ScrFI CCNGG 2 cut(s) 110, 140
SetI ASST 4 cut(s) 53, 129, 177, 209
SfcI CTRYAG 1 cut(s) 10
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SseBI AGGCCT 1 cut(s) 197
SsiI CCGC 3 cut(s) 27, 106, 214
StuI AGGCCT 1 cut(s) 197
StyD4I CCNGG 2 cut(s) 108, 138
TaaI ACNGT 1 cut(s) 14
TaiI ACGT 1 cut(s) 53
TaqI TCGA 2 cut(s) 120, 156
TscAI CASTG 1 cut(s) 19
TspRI CASTG 1 cut(s) 19
XagI CCTNNNNNAGG 3 cut(s) 107, 191, 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.