Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002828

Physical Location & Seq

Genomic Coordinates Reverse (-)

76774699 .. 76775522

Gene Structure 824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00055330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAACACAAGGCCTCGATCAAATTTTCGCCTTTGGGTCTCTGTATTGATAATGCGGTGCGACACATCTTCGAATCATTATGCAATGAACACAAGGCCTCGGTCAAATTGTATGCGAAGCGAGCGCCTTCGGAAGCAGTGTTTTATCCGGGTTTCAGCGGCAACAGCAGCTGGACCTTTATGTGACGAGCCTATGTGGGCGGACGAAAGTTTTAAAGGAGGAAATGCGGGAAGGCTCCCCATTGTTCACCGTACATGCCTATGTGCCGGTTTCGAAAGCTTTGGTTTTGCGGATGAGCTTAGAAGGTGGATTGCTGGAGCTGCAAGTGCTCTTCTTGTGCTTAGGCAACTTAGCCACCGGGAAGCACTTGATAAGGATCCTTTCTTTGTACCAAAAACGGATGAGGAAAAAGAAGAGTTTGGTGATGGTTCTAGTGTGCCTCCAAATACAGCAAGAAAATCGATAAATGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EFG_C EFG_II GTP_EFTU GTP_EFTU_D2

Protein Analysis

157

Amino Acids

17.62

Weight (kDa)

9.07

Isoelectric Point (pI)

51.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22980 AT3G22980 AT3G22980
fragaria_vesca	FvH4_3g14510 FvH4_4g04790 FvH4_4g04800 FvH4_4g04801 FvH4_5g27362 FvH4_6g08980
malus_domestica	MD10G1213300.v1.1
prunus_persica	Prupe.4G129900_v2.0.a1
pyrus_communis	pycom05g21320 pycom05g21330 pycom05g23810 pycom10g18000
rosa_chinensis	RchiOBHm_Chr6g0274771
rosa_laevigata	RLG00000018664 RLG00000032745
rosa_multiflora	Rmu_co8270721.1_g000001 Rmu_co8337679.1_g000001 Rmu_sc0001938.1_g000004 Rmu_sc0006223.1_g000002 Rmu_sc0014273.1_g000001 Rmu_ssc0000027.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055330 Rroxscaffold_2G00121910 Rroxscaffold_2G00121920 Rroxscaffold_7G00193950
rosa_rugosa	Rorug06G0084300
rosa_samantha	Rh2AG294600 Rh2DG318500 Rh2DG318700 Rh5DG169500 Rh6AG200200 Rh6BG203700 Rh6CG203900 Rh6DG195300
rosa_wichuraiana	Rw5G015390 Rw6G017390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	55, 158, 200, 227, 290
AclWI	GGATC	2 cut(s)	371, 384
AcsI	RAATTY	1 cut(s)	22
AfaI	GTAC	2 cut(s)	253, 390
AluBI	AGCT	4 cut(s)	170, 279, 298, 320
AluI	AGCT	4 cut(s)	170, 279, 298, 320
Alw21I	GWGCWC	1 cut(s)	331
Alw26I	GTCTC	1 cut(s)	43
AlwI	GGATC	2 cut(s)	371, 384
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	2 cut(s)	11, 95
ApeKI	GCWGC	2 cut(s)	167, 320
ApoI	RAATTY	1 cut(s)	22
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	173
AsuC2I	CCSGG	2 cut(s)	149, 359
AsuHPI	GGTGA	2 cut(s)	239, 434
AsuII	TTCGAA	2 cut(s)	71, 273
AvaII	GGWCC	1 cut(s)	173
BamHI	GGATCC	1 cut(s)	376
Bbv12I	GWGCWC	1 cut(s)	331
BbvI	GCAGC	2 cut(s)	179, 307
BccI	CCATC	1 cut(s)	419
BcgI	CGANNNNNNTGC	1 cut(s)	441
BcnI	CCSGG	2 cut(s)	149, 359
BcoDI	GTCTC	1 cut(s)	43
BfaI	CTAG	1 cut(s)	432
BfoI	RGCGCY	1 cut(s)	127
BisI	GCNGC	3 cut(s)	159, 168, 321
BlsI	GCNGC	3 cut(s)	160, 169, 322
Bme1390I	CCNGG	2 cut(s)	149, 359
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	236, 378
BmrFI	CCNGG	2 cut(s)	149, 359
BpmI	CTGGAG	1 cut(s)	336
Bpu10I	CCTNAGC	1 cut(s)	341
Bpu14I	TTCGAA	2 cut(s)	71, 273
BpuMI	CCSGG	2 cut(s)	149, 359
Bsa29I	ATCGAT	1 cut(s)	461
BsaBI	GATNNNNATC	1 cut(s)	375
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	98
Bse118I	RCCGGY	1 cut(s)	266
Bse3DI	GCAATG	1 cut(s)	90
Bse8I	GATNNNNATC	1 cut(s)	375
BseCI	ATCGAT	1 cut(s)	461
BseDI	CCNNGG	1 cut(s)	98
BseGI	GGATG	2 cut(s)	298, 406
BseJI	GATNNNNATC	1 cut(s)	375
BseMI	GCAATG	1 cut(s)	90
BseXI	GCAGC	2 cut(s)	179, 307
BshFI	GGCC	2 cut(s)	13, 97
BshVI	ATCGAT	1 cut(s)	461
BsiHKAI	GWGCWC	1 cut(s)	331
BsiSI	CCGG	3 cut(s)	148, 267, 358
BsmAI	GTCTC	1 cut(s)	43
BsnI	GGCC	2 cut(s)	13, 97
Bso31I	GGTCTC	1 cut(s)	43
Bsp119I	TTCGAA	2 cut(s)	71, 273
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	2 cut(s)	17, 376
BspACI	CCGC	5 cut(s)	55, 158, 200, 227, 290
BspANI	GGCC	2 cut(s)	13, 97
BspDI	ATCGAT	1 cut(s)	461
BspLI	GGNNCC	2 cut(s)	236, 378
BspPI	GGATC	2 cut(s)	371, 384
BspQI	GCTCTTC	1 cut(s)	336
BspT104I	TTCGAA	2 cut(s)	71, 273
BspTNI	GGTCTC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	90
BsrFI	RCCGGY	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	98
BssMI	GATC	2 cut(s)	17, 376
Bst4CI	ACNGT	1 cut(s)	251
Bst6I	CTCTTC	2 cut(s)	336, 408
BstBI	TTCGAA	2 cut(s)	71, 273
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	3 cut(s)	299, 341, 350
BstF5I	GGATG	2 cut(s)	298, 406
BstH2I	RGCGCY	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	2 cut(s)	20, 379
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	2 cut(s)	17, 376
BstMWI	GCNNNNNNNGC	5 cut(s)	121, 164, 167, 320, 326
BstNSI	RCATGY	1 cut(s)	258
BstSCI	CCNGG	2 cut(s)	147, 357
BstV1I	GCAGC	2 cut(s)	179, 307
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
Bsu15I	ATCGAT	1 cut(s)	461
BsuRI	GGCC	2 cut(s)	13, 97
BsuTUI	ATCGAT	1 cut(s)	461
BtsCI	GGATG	2 cut(s)	298, 406
BtsI	GCAGTG	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	122
CaiI	CAGNNNCTG	1 cut(s)	170
CfoI	GCGC	1 cut(s)	126
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	173
ClaI	ATCGAT	1 cut(s)	461
Csp6I	GTAC	2 cut(s)	252, 389
CviAII	CATG	1 cut(s)	255
CviJI	RGCY	9 cut(s)	13, 97, 170, 190, 235, 279, 298, 320, 354
CviKI_1	RGCY	9 cut(s)	13, 97, 170, 190, 235, 279, 298, 320, 354
CviQI	GTAC	2 cut(s)	252, 389
DdeI	CTNAG	3 cut(s)	299, 341, 350
DpnI	GATC	2 cut(s)	19, 378
DpnII	GATC	2 cut(s)	17, 376
DraI	TTTAAA	1 cut(s)	214
Eam1104I	CTCTTC	2 cut(s)	336, 408
EarI	CTCTTC	2 cut(s)	336, 408
EciI	GGCGGA	1 cut(s)	215
Eco147I	AGGCCT	2 cut(s)	13, 97
Eco31I	GGTCTC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	173
FaeI	CATG	1 cut(s)	258
FaiI	YATR	6 cut(s)	81, 113, 181, 194, 256, 262
FatI	CATG	1 cut(s)	254
FauI	CCCGC	1 cut(s)	220
Fnu4HI	GCNGC	3 cut(s)	159, 168, 321
FokI	GGATG	2 cut(s)	305, 413
Fsp4HI	GCNGC	3 cut(s)	159, 168, 321
FspBI	CTAG	1 cut(s)	432
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	3 cut(s)	159, 168, 321
GsuI	CTGGAG	1 cut(s)	336
HaeII	RGCGCY	1 cut(s)	127
HaeIII	GGCC	2 cut(s)	13, 97
HapII	CCGG	3 cut(s)	148, 267, 358
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	258
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	277
HinfI	GANTC	1 cut(s)	73
HpaII	CCGG	3 cut(s)	148, 267, 358
HphI	GGTGA	2 cut(s)	239, 434
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	132
Hpy8I	GTNNAC	1 cut(s)	247
HpyAV	CCTTC	3 cut(s)	137, 225, 297
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4V	TGCA	2 cut(s)	83, 323
HpyF10VI	GCNNNNNNNGC	5 cut(s)	121, 164, 167, 320, 326
HpyF3I	CTNAG	3 cut(s)	299, 341, 350
Hsp92II	CATG	1 cut(s)	258
HspAI	GCGC	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	17, 376
LguI	GCTCTTC	1 cut(s)	336
LmnI	GCTCC	2 cut(s)	240, 317
LpnPI	CCDG	5 cut(s)	156, 161, 280, 300, 371
Lsp1109I	GCAGC	2 cut(s)	179, 307
MaeI	CTAG	1 cut(s)	432
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	2 cut(s)	19, 378
MboI	GATC	2 cut(s)	17, 376
MboII	GAAGA	3 cut(s)	60, 323, 425
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	2 cut(s)	22, 106
MnlI	CCTC	5 cut(s)	24, 108, 212, 397, 450
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	259
MspA1I	CMGCKG	2 cut(s)	158, 170
MspI	CCGG	3 cut(s)	148, 267, 358
MspR9I	CCNGG	2 cut(s)	149, 359
MwoI	GCNNNNNNNGC	5 cut(s)	121, 164, 167, 320, 326
NciI	CCSGG	2 cut(s)	149, 359
NdeII	GATC	2 cut(s)	17, 376
NlaIII	CATG	1 cut(s)	258
NlaIV	GGNNCC	2 cut(s)	236, 378
NmuCI	GTSAC	1 cut(s)	182
NspI	RCATGY	1 cut(s)	258
NspV	TTCGAA	2 cut(s)	71, 273
PceI	AGGCCT	2 cut(s)	13, 97
PciSI	GCTCTTC	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	1 cut(s)	467
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	3 cut(s)	160, 169, 322
PspN4I	GGNNCC	2 cut(s)	236, 378
PspPI	GGNCC	1 cut(s)	173
PstNI	CAGNNNCTG	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	376
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	2 cut(s)	253, 390
RsaNI	GTAC	2 cut(s)	252, 389
RseI	CAYNNNNRTG	1 cut(s)	259
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	3 cut(s)	159, 168, 321
Sau3AI	GATC	2 cut(s)	17, 376
Sau96I	GGNCC	1 cut(s)	173
ScrFI	CCNGG	2 cut(s)	149, 359
SduI	GDGCHC	1 cut(s)	331
SetI	ASST	6 cut(s)	172, 178, 281, 300, 308, 322
SfuI	TTCGAA	2 cut(s)	71, 273
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	259
Sse9I	AATT	2 cut(s)	22, 106
SseBI	AGGCCT	2 cut(s)	13, 97
SsiI	CCGC	5 cut(s)	55, 158, 200, 227, 290
SspMI	CTAG	1 cut(s)	432
StuI	AGGCCT	2 cut(s)	13, 97
StyD4I	CCNGG	2 cut(s)	147, 357
TaaI	ACNGT	1 cut(s)	251
TaqI	TCGA	4 cut(s)	16, 71, 273, 461
TaqII	GACCGA	1 cut(s)	90
TasI	AATT	2 cut(s)	22, 106
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	143
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	2 cut(s)	167, 320
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	2 cut(s)	17, 101
TspGWI	ACGGA	1 cut(s)	413
TspRI	CASTG	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	22
XceI	RCATGY	1 cut(s)	258
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.