Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002828

Physical Location & Seq

Genomic Coordinates Forward (+)

18166897 .. 18168062

Gene Structure 1166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG169500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGAAGATATCCTTGGAGGCAAGGCTGCCCAGACGGGAGAGACCAATAAAAGTTTGAACACACAGGTTGCAAGCGCTGTAGAGGATGCGAATCCAATTGAAACACTAAGGAAACGTATGATGGAAGCTGTGGAAAGTGATATTCTGTCTAGTGGTGAGACTGACAAAGATCGGGCTGAGAAATGTAAAGTCCAATGGCAAAAACTTCTTAAAAGGATCTGGGCACTTGGCCCTTGGCATATTGGCCCTAACATCCTACTTGCTCCAGAAATGAAAGGAAAGGGTACTGACTCCTCTGTGCTCATCCGCGGCTCCTCTCATGTTTCTGAGAAATTAGGATTGGTGGATGCTTCTGACAATGACAATGACAATGATAATGCAGCTGCTGACACATCTTCAGAAGTAACTGAAGCATTGTATGCTGAAGCAGAGCGCCTTCAGAGCAGCGTTTTATCTGGGTTTCAACTGGCAACAGCAGCTGGACCTTTATGTGACGAGCCTATGTGGGGTTTAGCATTTGTGGTTGAAGCTTACATTTCACCATTAGCTGCTCAGTTTGATGAGTTAGAAACCTCCCACCAGCAACCTGAGCAATATGGTATCTTCACAGGACAGGTAATGACAGCCGTTAAAGATGCTTGTAGAGCAGCTGTGCTTCAAAAGAAACCACGGCTTGTGGAAGCTATGTACTTCTGTGAGTTGATCACGCCAACTAAACAATTGGGTAATATGTATGCCGTGCTTGGACGAAGGCGGGCGAAAGTTTTAAAGGAGGAAATGCAGGAAGGCTCTGCATTGTTCACTGTACATGCCTATGTGCCGGTTTCTGAAAGCTTTGGTTTTGCGGATGAGCTTAGAAGGTGGACTGCTGGAGTTGCAAGTGCTCTTCTTGTGCTTAGCCATTGGGAAGCACTTGATAAGGATCCTTTCTTTGTACCAAAAACATATGAGGAAAAAGAGGAGTTTGGTGATGGTTCTAGTGTGCCTCCAAATACAGCAAGAAAACTGATAAATGCTGTAAGACGGCAGAAGGGTCTTCCAGTGGAGGAAAAAGTAGTGCAGCACGCAACAAAGCAGAGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EFG_C EFG_II GTP_EFTU GTP_EFTU_D2

Protein Analysis

361

Amino Acids

39.7

Weight (kDa)

5.23

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EFL1	PF25118	30 - 87	1.7e-07	Elongation factor-like GTPase 1-like domain
EFG_C	PF00679	224 - 309	8.6e-17	Elongation factor G C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22980 AT3G22980 AT3G22980
fragaria_vesca	FvH4_3g14510 FvH4_4g04790 FvH4_4g04800 FvH4_4g04801 FvH4_5g27362 FvH4_6g08980
malus_domestica	MD10G1213300.v1.1
prunus_persica	Prupe.4G129900_v2.0.a1
pyrus_communis	pycom05g21320 pycom05g21330 pycom05g23810 pycom10g18000
rosa_chinensis	RchiOBHm_Chr6g0274771
rosa_laevigata	RLG00000018664 RLG00000032745
rosa_multiflora	Rmu_co8270721.1_g000001 Rmu_co8337679.1_g000001 Rmu_sc0001938.1_g000004 Rmu_sc0006223.1_g000002 Rmu_sc0014273.1_g000001 Rmu_ssc0000027.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055330 Rroxscaffold_2G00121910 Rroxscaffold_2G00121920 Rroxscaffold_7G00193950
rosa_rugosa	Rorug06G0084300
rosa_samantha	Rh2AG294600 Rh2DG318500 Rh2DG318700 Rh5DG169500 Rh6AG200200 Rh6BG203700 Rh6CG203900 Rh6DG195300
rosa_wichuraiana	Rw5G015390 Rw6G017390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	309
AciI	CCGC	4 cut(s)	307, 309, 754, 845
AclWI	GGATC	3 cut(s)	224, 917, 930
AcuI	CTGAAG	4 cut(s)	381, 422, 429, 444
AfaI	GTAC	4 cut(s)	286, 689, 807, 936
AfeI	AGCGCT	1 cut(s)	76
AfiI	CCNNNNNNNGG	1 cut(s)	506
AgsI	TTSAA	5 cut(s)	58, 101, 464, 527, 659
AjuI	GAANNNNNNNTTGG	3 cut(s)	29, 323, 355
AluBI	AGCT	9 cut(s)	128, 383, 479, 530, 548, 650, 683, 834, 853
AluI	AGCT	9 cut(s)	128, 383, 479, 530, 548, 650, 683, 834, 853
Alw21I	GWGCWC	2 cut(s)	303, 886
Alw26I	GTCTC	2 cut(s)	35, 152
AlwI	GGATC	3 cut(s)	224, 917, 930
AlwNI	CAGNNNCTG	2 cut(s)	386, 479
Aor51HI	AGCGCT	1 cut(s)	76
AoxI	GGCC	2 cut(s)	229, 244
ApeKI	GCWGC	8 cut(s)	26, 380, 383, 444, 476, 548, 647, 1060
AspLEI	GCGC	2 cut(s)	77, 435
AspS9I	GGNCC	3 cut(s)	230, 245, 482
AsuHPI	GGTGA	3 cut(s)	167, 531, 980
AvaII	GGWCC	1 cut(s)	482
BaeGI	GKGCMC	1 cut(s)	226
BamHI	GGATCC	1 cut(s)	922
BbsI	GAAGAC	1 cut(s)	1028
Bbv12I	GWGCWC	2 cut(s)	303, 886
BbvI	GCAGC	8 cut(s)	13, 370, 392, 456, 488, 535, 659, 1072
BccI	CCATC	2 cut(s)	115, 965
BceAI	ACGGC	4 cut(s)	611, 686, 722, 1040
BclI	TGATCA	1 cut(s)	702
BcoDI	GTCTC	2 cut(s)	35, 152
BfaI	CTAG	2 cut(s)	150, 978
BfmI	CTRYAG	1 cut(s)	78
BfoI	RGCGCY	2 cut(s)	78, 436
BisI	GCNGC	9 cut(s)	27, 310, 381, 384, 445, 477, 549, 648, 1061
BlpI	GCTNAGC	1 cut(s)	896
BlsI	GCNGC	9 cut(s)	28, 311, 382, 385, 446, 478, 550, 649, 1062
Bme18I	GGWCC	1 cut(s)	482
BmgT120I	GGNCC	3 cut(s)	230, 245, 482
BmiI	GGNNCC	2 cut(s)	313, 924
BmsI	GCATC	3 cut(s)	76, 337, 625
BpiI	GAAGAC	1 cut(s)	1028
BpmI	CTGGAG	2 cut(s)	249, 891
Bpu10I	CCTNAGC	1 cut(s)	588
Bpu1102I	GCTNAGC	1 cut(s)	896
BsaBI	GATNNNNATC	2 cut(s)	90, 921
BsaI	GGTCTC	1 cut(s)	35
BsaJI	CCNNGG	4 cut(s)	13, 233, 307, 668
Bsc4I	CCNNNNNNNGG	1 cut(s)	506
Bse118I	RCCGGY	1 cut(s)	820
Bse1I	ACTGG	2 cut(s)	471, 1040
Bse8I	GATNNNNATC	2 cut(s)	90, 921
BseDI	CCNNGG	4 cut(s)	13, 233, 307, 668
BseGI	GGATG	5 cut(s)	91, 252, 303, 352, 853
BseJI	GATNNNNATC	2 cut(s)	90, 921
BseLI	CCNNNNNNNGG	1 cut(s)	506
BseMII	CTCAG	4 cut(s)	168, 318, 566, 579
BseNI	ACTGG	2 cut(s)	471, 1040
BseRI	GAGGAG	3 cut(s)	283, 304, 974
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	8 cut(s)	13, 370, 392, 456, 488, 535, 659, 1072
BsgI	GTGCAG	1 cut(s)	1079
Bsh1236I	CGCG	1 cut(s)	309
BshFI	GGCC	2 cut(s)	231, 246
BsiHKAI	GWGCWC	2 cut(s)	303, 886
BsiSI	CCGG	1 cut(s)	821
BslI	CCNNNNNNNGG	1 cut(s)	506
BsmAI	GTCTC	2 cut(s)	35, 152
BsnI	GGCC	2 cut(s)	231, 246
Bso31I	GGTCTC	1 cut(s)	35
Bsp1286I	GDGCHC	3 cut(s)	226, 303, 886
Bsp1407I	TGTACA	1 cut(s)	805
Bsp143I	GATC	4 cut(s)	169, 216, 702, 922
Bsp1720I	GCTNAGC	1 cut(s)	896
BspACI	CCGC	4 cut(s)	307, 309, 754, 845
BspANI	GGCC	2 cut(s)	231, 246
BspCNI	CTCAG	4 cut(s)	169, 319, 565, 580
BspFNI	CGCG	1 cut(s)	309
BspLI	GGNNCC	2 cut(s)	313, 924
BspPI	GGATC	3 cut(s)	224, 917, 930
BspQI	GCTCTTC	1 cut(s)	891
BspTNI	GGTCTC	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	820
BsrGI	TGTACA	1 cut(s)	805
BsrI	ACTGG	2 cut(s)	471, 1040
BssAI	RCCGGY	1 cut(s)	820
BssECI	CCNNGG	4 cut(s)	13, 233, 307, 668
BssMI	GATC	4 cut(s)	169, 216, 702, 922
BssT1I	CCWWGG	2 cut(s)	13, 233
Bst4CI	ACNGT	1 cut(s)	805
Bst6I	CTCTTC	1 cut(s)	891
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstAUI	TGTACA	1 cut(s)	805
BstC8I	GCNNGC	3 cut(s)	73, 756, 1065
BstDEI	CTNAG	7 cut(s)	107, 177, 327, 552, 588, 854, 896
BstDSI	CCRYGG	2 cut(s)	307, 668
BstF5I	GGATG	5 cut(s)	91, 252, 303, 352, 853
BstFNI	CGCG	1 cut(s)	309
BstH2I	RGCGCY	2 cut(s)	78, 436
BstHHI	GCGC	2 cut(s)	77, 435
BstKTI	GATC	4 cut(s)	172, 219, 705, 925
BstMAI	GTCTC	2 cut(s)	35, 152
BstMBI	GATC	4 cut(s)	169, 216, 702, 922
BstMWI	GCNNNNNNNGC	6 cut(s)	419, 441, 476, 589, 644, 875
BstNSI	RCATGY	1 cut(s)	812
BstSFI	CTRYAG	1 cut(s)	78
BstSLI	GKGCMC	1 cut(s)	226
BstUI	CGCG	1 cut(s)	309
BstV1I	GCAGC	8 cut(s)	13, 370, 392, 456, 488, 535, 659, 1072
BstV2I	GAAGAC	1 cut(s)	1028
BstX2I	RGATCY	2 cut(s)	216, 922
BstYI	RGATCY	2 cut(s)	216, 922
BsuRI	GGCC	2 cut(s)	231, 246
BtgI	CCRYGG	2 cut(s)	307, 668
BtsCI	GGATG	5 cut(s)	91, 252, 303, 352, 853
BtsIMutI	CAGTG	2 cut(s)	801, 1047
Cac8I	GCNNGC	3 cut(s)	73, 756, 1065
CaiI	CAGNNNCTG	2 cut(s)	386, 479
CfoI	GCGC	2 cut(s)	77, 435
Cfr10I	RCCGGY	1 cut(s)	820
Cfr13I	GGNCC	3 cut(s)	230, 245, 482
Cfr42I	CCGCGG	1 cut(s)	310
Csp6I	GTAC	4 cut(s)	285, 688, 806, 935
CviAII	CATG	2 cut(s)	320, 809
CviQI	GTAC	4 cut(s)	285, 688, 806, 935
DdeI	CTNAG	7 cut(s)	107, 177, 327, 552, 588, 854, 896
DpnI	GATC	4 cut(s)	171, 218, 704, 924
DpnII	GATC	4 cut(s)	169, 216, 702, 922
DraI	TTTAAA	1 cut(s)	768
Eam1104I	CTCTTC	1 cut(s)	891
EarI	CTCTTC	1 cut(s)	891
Eco130I	CCWWGG	2 cut(s)	13, 233
Eco31I	GGTCTC	1 cut(s)	35
Eco32I	GATATC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	482
Eco47III	AGCGCT	1 cut(s)	76
Eco57I	CTGAAG	4 cut(s)	381, 422, 429, 444
EcoRV	GATATC	1 cut(s)	10
EcoT14I	CCWWGG	2 cut(s)	13, 233
ErhI	CCWWGG	2 cut(s)	13, 233
FaeI	CATG	2 cut(s)	323, 812
FalI	AAGNNNNNCTT	1 cut(s)	29
FatI	CATG	2 cut(s)	319, 808
FauI	CCCGC	1 cut(s)	747
FauNDI	CATATG	1 cut(s)	946
FbaI	TGATCA	1 cut(s)	702
Fnu4HI	GCNGC	9 cut(s)	27, 310, 381, 384, 445, 477, 549, 648, 1061
FokI	GGATG	5 cut(s)	98, 239, 290, 359, 860
Fsp4HI	GCNGC	9 cut(s)	27, 310, 381, 384, 445, 477, 549, 648, 1061
FspBI	CTAG	2 cut(s)	150, 978
GlaI	GCGC	2 cut(s)	76, 434
GluI	GCNGC	9 cut(s)	27, 310, 381, 384, 445, 477, 549, 648, 1061
GsuI	CTGGAG	2 cut(s)	249, 891
HaeII	RGCGCY	2 cut(s)	78, 436
HaeIII	GGCC	2 cut(s)	231, 246
HapII	CCGG	1 cut(s)	821
HhaI	GCGC	2 cut(s)	77, 435
Hin1II	CATG	2 cut(s)	323, 812
Hin6I	GCGC	2 cut(s)	75, 433
HinP1I	GCGC	2 cut(s)	75, 433
HindIII	AAGCTT	2 cut(s)	528, 832
HinfI	GANTC	2 cut(s)	91, 290
HpaII	CCGG	1 cut(s)	821
HphI	GGTGA	3 cut(s)	167, 531, 980
Hpy166II	GTNNAC	2 cut(s)	801, 864
Hpy188I	TCNGA	5 cut(s)	328, 355, 400, 441, 829
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	2 cut(s)	801, 864
HpyAV	CCTTC	5 cut(s)	446, 744, 779, 852, 1024
HpyCH4III	ACNGT	1 cut(s)	805
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	6 cut(s)	71, 380, 781, 794, 878, 1060
HpyF10VI	GCNNNNNNNGC	6 cut(s)	419, 441, 476, 589, 644, 875
HpyF3I	CTNAG	7 cut(s)	107, 177, 327, 552, 588, 854, 896
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	2 cut(s)	323, 812
HspAI	GCGC	2 cut(s)	75, 433
Ksp22I	TGATCA	1 cut(s)	702
KspI	CCGCGG	1 cut(s)	310
Kzo9I	GATC	4 cut(s)	169, 216, 702, 922
LguI	GCTCTTC	1 cut(s)	891
LmnI	GCTCC	2 cut(s)	268, 317
Lsp1109I	GCAGC	8 cut(s)	13, 370, 392, 456, 488, 535, 659, 1072
LweI	GCATC	3 cut(s)	76, 337, 625
MaeI	CTAG	2 cut(s)	150, 978
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	2 cut(s)	403, 491
MalI	GATC	4 cut(s)	171, 218, 704, 924
MboI	GATC	4 cut(s)	169, 216, 702, 922
MboII	GAAGA	5 cut(s)	17, 387, 595, 878, 1028
MfeI	CAATTG	2 cut(s)	96, 719
MflI	RGATCY	2 cut(s)	216, 922
MhlI	GDGCHC	3 cut(s)	226, 303, 886
MluCI	AATT	3 cut(s)	96, 332, 719
MlyI	GAGTC	1 cut(s)	284
MseI	TTAA	3 cut(s)	210, 630, 767
MslI	CAYNNNNRTG	1 cut(s)	813
MspA1I	CMGCKG	4 cut(s)	309, 383, 479, 650
MspI	CCGG	1 cut(s)	821
MunI	CAATTG	2 cut(s)	96, 719
MvnI	CGCG	1 cut(s)	309
MwoI	GCNNNNNNNGC	6 cut(s)	419, 441, 476, 589, 644, 875
NdeI	CATATG	1 cut(s)	946
NdeII	GATC	4 cut(s)	169, 216, 702, 922
NlaIII	CATG	2 cut(s)	323, 812
NlaIV	GGNNCC	2 cut(s)	313, 924
NmuCI	GTSAC	1 cut(s)	491
NspI	RCATGY	1 cut(s)	812
PciSI	GCTCTTC	1 cut(s)	891
PfeI	GAWTC	1 cut(s)	91
PkrI	GCNGC	9 cut(s)	28, 311, 382, 385, 446, 478, 550, 649, 1062
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
PspN4I	GGNNCC	2 cut(s)	313, 924
PspPI	GGNCC	3 cut(s)	230, 245, 482
PstNI	CAGNNNCTG	2 cut(s)	386, 479
PsuI	RGATCY	2 cut(s)	216, 922
PvuII	CAGCTG	3 cut(s)	383, 479, 650
RsaI	GTAC	4 cut(s)	286, 689, 807, 936
RsaNI	GTAC	4 cut(s)	285, 688, 806, 935
RseI	CAYNNNNRTG	1 cut(s)	813
SacII	CCGCGG	1 cut(s)	310
SapI	GCTCTTC	1 cut(s)	891
SaqAI	TTAA	3 cut(s)	210, 630, 767
SatI	GCNGC	9 cut(s)	27, 310, 381, 384, 445, 477, 549, 648, 1061
Sau3AI	GATC	4 cut(s)	169, 216, 702, 922
Sau96I	GGNCC	3 cut(s)	230, 245, 482
SchI	GAGTC	1 cut(s)	284
SduI	GDGCHC	3 cut(s)	226, 303, 886
SfaNI	GCATC	3 cut(s)	76, 337, 625
SfcI	CTRYAG	1 cut(s)	78
Sfr303I	CCGCGG	1 cut(s)	310
SgrBI	CCGCGG	1 cut(s)	310
SinI	GGWCC	1 cut(s)	482
SmiMI	CAYNNNNRTG	1 cut(s)	813
Sse9I	AATT	3 cut(s)	96, 332, 719
SsiI	CCGC	4 cut(s)	307, 309, 754, 845
SspMI	CTAG	2 cut(s)	150, 978
StyI	CCWWGG	2 cut(s)	13, 233
TaaI	ACNGT	1 cut(s)	805
TaiI	ACGT	1 cut(s)	118
TasI	AATT	3 cut(s)	96, 332, 719
TatI	WGTACW	2 cut(s)	687, 805
TauI	GCSGC	1 cut(s)	312
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	3 cut(s)	210, 630, 767
Tru9I	TTAA	3 cut(s)	210, 630, 767
TscAI	CASTG	2 cut(s)	808, 1047
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	8 cut(s)	26, 380, 383, 444, 476, 548, 647, 1060
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	1 cut(s)	287
TspRI	CASTG	2 cut(s)	808, 1047
VpaK11BI	GGWCC	1 cut(s)	482
XceI	RCATGY	1 cut(s)	812
XspI	CTAG	2 cut(s)	150, 978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.