Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014273.1

Orthogroup ID

OG0002828

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 242

Gene Structure 242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014273.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 242 bp

atgagcttagaaggtggactgctggagctgcaagtgctcttcttgtgcttagccactgggaagctcttgataaggatcctttctttgtaccaaaaacggatgaggaaaaagaggagtttggtgatggttctagtgtgcctccaaatacagcaagaaaactgataaatgctgtaagacggaagaagggtcttccagtggaggaaaaagtagtgcagcacgcaacaaagcagaggacttgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EFG_C EFG_II GTP_EFTU GTP_EFTU_D2

Protein Analysis

79

Amino Acids

8.89

Weight (kDa)

8.91

Isoelectric Point (pI)

57.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22980 AT3G22980 AT3G22980
fragaria_vesca	FvH4_3g14510 FvH4_4g04790 FvH4_4g04800 FvH4_4g04801 FvH4_5g27362 FvH4_6g08980
malus_domestica	MD10G1213300.v1.1
prunus_persica	Prupe.4G129900_v2.0.a1
pyrus_communis	pycom05g21320 pycom05g21330 pycom05g23810 pycom10g18000
rosa_chinensis	RchiOBHm_Chr6g0274771
rosa_laevigata	RLG00000018664 RLG00000032745
rosa_multiflora	Rmu_co8270721.1_g000001 Rmu_co8337679.1_g000001 Rmu_sc0001938.1_g000004 Rmu_sc0006223.1_g000002 Rmu_sc0014273.1_g000001 Rmu_ssc0000027.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055330 Rroxscaffold_2G00121910 Rroxscaffold_2G00121920 Rroxscaffold_7G00193950
rosa_rugosa	Rorug06G0084300
rosa_samantha	Rh2AG294600 Rh2DG318500 Rh2DG318700 Rh5DG169500 Rh6AG200200 Rh6BG203700 Rh6CG203900 Rh6DG195300
rosa_wichuraiana	Rw5G015390 Rw6G017390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	70, 83
AfaI	GTAC	1 cut(s)	89
AluBI	AGCT	3 cut(s)	6, 28, 64
AluI	AGCT	3 cut(s)	6, 28, 64
Alw21I	GWGCWC	1 cut(s)	39
AlwI	GGATC	2 cut(s)	70, 83
ApeKI	GCWGC	2 cut(s)	28, 213
AsuHPI	GGTGA	1 cut(s)	133
BamHI	GGATCC	1 cut(s)	75
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	2 cut(s)	15, 225
BccI	CCATC	1 cut(s)	118
BfaI	CTAG	1 cut(s)	131
BisI	GCNGC	2 cut(s)	29, 214
BlpI	GCTNAGC	1 cut(s)	49
BlsI	GCNGC	2 cut(s)	30, 215
BmiI	GGNNCC	1 cut(s)	77
BmrI	ACTGGG	1 cut(s)	66
BmuI	ACTGGG	1 cut(s)	66
BpiI	GAAGAC	1 cut(s)	181
BpmI	CTGGAG	1 cut(s)	44
Bpu1102I	GCTNAGC	1 cut(s)	49
BsaBI	GATNNNNATC	1 cut(s)	74
Bse1I	ACTGG	2 cut(s)	61, 193
Bse8I	GATNNNNATC	1 cut(s)	74
BseGI	GGATG	1 cut(s)	105
BseJI	GATNNNNATC	1 cut(s)	74
BseNI	ACTGG	2 cut(s)	61, 193
BseRI	GAGGAG	1 cut(s)	127
BseXI	GCAGC	2 cut(s)	15, 225
BsgI	GTGCAG	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	75
Bsp1720I	GCTNAGC	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	77
BspPI	GGATC	2 cut(s)	70, 83
BspQI	GCTCTTC	1 cut(s)	44
BsrI	ACTGG	2 cut(s)	61, 193
BssMI	GATC	1 cut(s)	75
Bst6I	CTCTTC	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	218
BstDEI	CTNAG	2 cut(s)	7, 49
BstF5I	GGATG	1 cut(s)	105
BstKTI	GATC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 34
BstV1I	GCAGC	2 cut(s)	15, 225
BstV2I	GAAGAC	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	54, 200
Cac8I	GCNNGC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	88
CviJI	RGCY	4 cut(s)	6, 28, 53, 64
CviKI_1	RGCY	4 cut(s)	6, 28, 53, 64
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	2 cut(s)	7, 49
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Fnu4HI	GCNGC	2 cut(s)	29, 214
FokI	GGATG	1 cut(s)	112
Fsp4HI	GCNGC	2 cut(s)	29, 214
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	2 cut(s)	29, 214
GsuI	CTGGAG	1 cut(s)	44
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188III	TCNNGA	1 cut(s)	67
Hpy8I	GTNNAC	1 cut(s)	17
HpyAV	CCTTC	2 cut(s)	5, 177
HpyCH4V	TGCA	2 cut(s)	31, 213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 34
HpyF3I	CTNAG	2 cut(s)	7, 49
Kzo9I	GATC	1 cut(s)	75
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	3 cut(s)	8, 42, 206
Lsp1109I	GCAGC	2 cut(s)	15, 225
MaeI	CTAG	1 cut(s)	131
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	3 cut(s)	31, 181, 192
MflI	RGATCY	1 cut(s)	75
MhlI	GDGCHC	1 cut(s)	39
MnlI	CCTC	5 cut(s)	96, 105, 149, 192, 224
MseI	TTAA	1 cut(s)	240
MwoI	GCNNNNNNNGC	2 cut(s)	28, 34
NdeII	GATC	1 cut(s)	75
NlaIV	GGNNCC	1 cut(s)	77
PciSI	GCTCTTC	1 cut(s)	44
PkrI	GCNGC	2 cut(s)	30, 215
PspN4I	GGNNCC	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	75
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	2 cut(s)	29, 214
Sau3AI	GATC	1 cut(s)	75
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	4 cut(s)	8, 16, 30, 66
SgeI	CNNG	9 cut(s)	35, 44, 55, 69, 79, 143, 164, 205, 229
SspMI	CTAG	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	2 cut(s)	61, 200
TseI	GCWGC	2 cut(s)	28, 213
TspGWI	ACGGA	2 cut(s)	112, 192
TspRI	CASTG	2 cut(s)	61, 200
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.