Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002828

Physical Location & Seq

Genomic Coordinates Forward (+)

39570402 .. 39576475

Gene Structure 6074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG318500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTTTGTTGAGTTTGTGCTTGAGCCGGTTTGGAGTGTGTACCAGGCGGCTTTGAAGGAGAAGGAGGAGGCTGAAGTGATGGTTCAGAAGGTGATTAGAACGTTTAATTTGACTATACCACCTCGGGATTTGAAGGGTGACCCAAAAGAGGCGGAGCTTGTGAGAAGTTCGGTGGAAGCTTGTGATTCTAGGCCTGAAGCTCCTTGTGTTGTTTTTGTTTCCAAAATGTTTGCCGTGCCAACGAAAACACTTCCAAAGTATGGCTTGGATGGGGAGATTTTGGATAATACATCTGATGAAGGTGAATTGGATGGGTGCTTCCTTGCGTTTGCAAGGATCTATAGTGGGGTTCTTCGTCCTGGTGAGAAAATTTATGTGCTTTCAGCTTTATATGATCCCTTAAAAGGGGAATCAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EFG_C EFG_II GTP_EFTU GTP_EFTU_D2

Protein Analysis

139

Amino Acids

15.51

Weight (kDa)

4.69

Isoelectric Point (pI)

36.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22980 AT3G22980 AT3G22980
fragaria_vesca	FvH4_3g14510 FvH4_4g04790 FvH4_4g04800 FvH4_4g04801 FvH4_5g27362 FvH4_6g08980
malus_domestica	MD10G1213300.v1.1
prunus_persica	Prupe.4G129900_v2.0.a1
pyrus_communis	pycom05g21320 pycom05g21330 pycom05g23810 pycom10g18000
rosa_chinensis	RchiOBHm_Chr6g0274771
rosa_laevigata	RLG00000018664 RLG00000032745
rosa_multiflora	Rmu_co8270721.1_g000001 Rmu_co8337679.1_g000001 Rmu_sc0001938.1_g000004 Rmu_sc0006223.1_g000002 Rmu_sc0014273.1_g000001 Rmu_ssc0000027.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055330 Rroxscaffold_2G00121910 Rroxscaffold_2G00121920 Rroxscaffold_7G00193950
rosa_rugosa	Rorug06G0084300
rosa_samantha	Rh2AG294600 Rh2DG318500 Rh2DG318700 Rh5DG169500 Rh6AG200200 Rh6BG203700 Rh6CG203900 Rh6DG195300
rosa_wichuraiana	Rw5G015390 Rw6G017390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	260
AciI	CCGC	2 cut(s)	47, 152
AclI	AACGTT	1 cut(s)	101
AclWI	GGATC	2 cut(s)	344, 389
AcsI	RAATTY	1 cut(s)	369
AcuI	CTGAAG	2 cut(s)	93, 216
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	4 cut(s)	148, 260, 404, 405
AgsI	TTSAA	2 cut(s)	55, 133
AjnI	CCWGG	2 cut(s)	42, 358
AluBI	AGCT	4 cut(s)	157, 179, 200, 386
AluI	AGCT	4 cut(s)	157, 179, 200, 386
AlwI	GGATC	2 cut(s)	344, 389
Ama87I	CYCGRG	1 cut(s)	123
AoxI	GGCC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	369
AsuHPI	GGTGA	4 cut(s)	103, 149, 314, 374
AvaI	CYCGRG	1 cut(s)	123
BccI	CCATC	3 cut(s)	73, 263, 305
BceAI	ACGGC	1 cut(s)	218
BciT130I	CCWGG	2 cut(s)	44, 360
BfaI	CTAG	1 cut(s)	189
BfmI	CTRYAG	1 cut(s)	340
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	2 cut(s)	44, 360
BmeT110I	CYCGRG	1 cut(s)	123
BmrFI	CCNGG	2 cut(s)	44, 360
BpuEI	CTTGAG	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 260, 404, 405
Bse118I	RCCGGY	1 cut(s)	25
BseBI	CCWGG	2 cut(s)	44, 360
BseDI	CCNNGG	1 cut(s)	122
BseGI	GGATG	2 cut(s)	274, 316
BseLI	CCNNNNNNNGG	4 cut(s)	148, 260, 404, 405
BseRI	GAGGAG	1 cut(s)	80
BshFI	GGCC	1 cut(s)	193
BsiHKCI	CYCGRG	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	4 cut(s)	148, 260, 404, 405
BsnI	GGCC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	336, 394
BspACI	CCGC	2 cut(s)	47, 152
BspANI	GGCC	1 cut(s)	193
BspPI	GGATC	2 cut(s)	344, 389
BsrFI	RCCGGY	1 cut(s)	25
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	122
BssMI	GATC	2 cut(s)	336, 394
Bst2UI	CCWGG	2 cut(s)	44, 360
BstEII	GGTNACC	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	274, 316
BstKTI	GATC	2 cut(s)	339, 397
BstMBI	GATC	2 cut(s)	336, 394
BstNI	CCWGG	2 cut(s)	44, 360
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	2 cut(s)	42, 358
BstSFI	CTRYAG	1 cut(s)	340
BstX2I	RGATCY	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	336
BsuRI	GGCC	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	274, 316
Cfr10I	RCCGGY	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	40
CviJI	RGCY	9 cut(s)	25, 50, 71, 157, 179, 193, 200, 264, 386
CviKI_1	RGCY	9 cut(s)	25, 50, 71, 157, 179, 193, 200, 264, 386
CviQI	GTAC	1 cut(s)	40
DpnI	GATC	2 cut(s)	338, 396
DpnII	GATC	2 cut(s)	336, 394
EciI	GGCGGA	1 cut(s)	167
Eco147I	AGGCCT	1 cut(s)	193
Eco57I	CTGAAG	2 cut(s)	93, 216
Eco88I	CYCGRG	1 cut(s)	123
Eco91I	GGTNACC	1 cut(s)	137
EcoO65I	GGTNACC	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	42, 358
FaiI	YATR	6 cut(s)	116, 261, 342, 375, 391, 393
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	2 cut(s)	281, 323
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	193
HapII	CCGG	1 cut(s)	26
HindIII	AAGCTT	1 cut(s)	177
HinfI	GANTC	2 cut(s)	185, 410
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	4 cut(s)	103, 149, 314, 374
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	2 cut(s)	87, 295
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	5 cut(s)	49, 55, 82, 127, 293
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	1 cut(s)	332
HpySE526I	ACGT	1 cut(s)	101
Kzo9I	GATC	2 cut(s)	336, 394
LmnI	GCTCC	2 cut(s)	154, 205
LpnPI	CCDG	6 cut(s)	29, 39, 56, 207, 345, 372
MaeI	CTAG	1 cut(s)	189
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	2 cut(s)	338, 396
MboI	GATC	2 cut(s)	336, 394
MboII	GAAGA	1 cut(s)	344
MflI	RGATCY	1 cut(s)	336
MluCI	AATT	3 cut(s)	106, 305, 369
MnlI	CCTC	4 cut(s)	58, 61, 132, 142
MseI	TTAA	2 cut(s)	105, 401
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	2 cut(s)	44, 360
MvaI	CCWGG	2 cut(s)	44, 360
NdeII	GATC	2 cut(s)	336, 394
NmuCI	GTSAC	1 cut(s)	137
PceI	AGGCCT	1 cut(s)	193
PfeI	GAWTC	2 cut(s)	185, 410
PflMI	CCANNNNNTGG	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	49
Psp1406I	AACGTT	1 cut(s)	101
Psp6I	CCWGG	2 cut(s)	42, 358
PspEI	GGTNACC	1 cut(s)	137
PspGI	CCWGG	2 cut(s)	42, 358
PsuI	RGATCY	1 cut(s)	336
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SaqAI	TTAA	2 cut(s)	105, 401
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	2 cut(s)	336, 394
ScrFI	CCNGG	2 cut(s)	44, 360
SetI	ASST	8 cut(s)	93, 104, 124, 159, 181, 202, 304, 388
SfcI	CTRYAG	1 cut(s)	340
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	3 cut(s)	106, 305, 369
SseBI	AGGCCT	1 cut(s)	193
SsiI	CCGC	2 cut(s)	47, 152
SspMI	CTAG	1 cut(s)	189
StuI	AGGCCT	1 cut(s)	193
StyD4I	CCNGG	2 cut(s)	42, 358
TaiI	ACGT	1 cut(s)	104
TasI	AATT	3 cut(s)	106, 305, 369
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	2 cut(s)	185, 410
Tru1I	TTAA	2 cut(s)	105, 401
Tru9I	TTAA	2 cut(s)	105, 401
TseFI	GTSAC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	1 cut(s)	312
Van91I	CCANNNNNTGG	1 cut(s)	260
XapI	RAATTY	1 cut(s)	369
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.