Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000027.1

Orthogroup ID

OG0002828

Physical Location & Seq

Genomic Coordinates Reverse (-)

281 .. 1249

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000027.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atggaagctgtggaaagtgatattctgtctagtggtgagactgacaaagatcgggctgagaaatgtaaagtccaatggcaaaaacttcttaaaaggatctgggcacttggcccttggcatattggccctaacatcctacttgctccagaaatgaaaggaaagggtactgactcctctgtgctcatccgcggctcctctcatgtttctgagaaattaggattggtggatgcttctgacaatgacaatgacaatgataatgcagctgctcacacatcttcagaagtaactgaagcattgtatgctgaagcagagcgccttcagagcagcgttttatctgggtttcaactggcaacagcagctggacctttatgtgacgagcctatgtggggtttagcatttgtggttgaagcttacatttcaccattagctgctcagtctgatgagttagaaacctcccaccagcaacctgagcaatatggtatcttcacaggacaggtaatgacagccgttaaagatgcttgtagagcagctgtgcttcaaaagaaaccacggcttgtggaagctatgtacttctgtgagttgatcacgccaactgaacaattgggtaatatgtatgccgtgcttggacgaaggcgggcgaaagttttaaaggaggaaatgcaggaaggctctgcattgttcactgtacatgcctatgtgccggtttctgaaagctttggttttgcggatgagcttagaaggtggactgctggagctgcaagtgctcttcttgtgcttagccactgggaagctcttgataaggatcctttctttgtaccaaaaacggatgaggaaaaagaggagtttggtgatggttctagtgtgcctccaaatacagcaagaaaactgataaatgctgtaagacggaagaagggtcttccagtggaggaaaaagtagtgcagcacgcaacaaagcagaggacttgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EFG_C EFG_II GTP_EFTU GTP_EFTU_D2

Protein Analysis

322

Amino Acids

35.42

Weight (kDa)

5.25

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22980 AT3G22980 AT3G22980
fragaria_vesca	FvH4_3g14510 FvH4_4g04790 FvH4_4g04800 FvH4_4g04801 FvH4_5g27362 FvH4_6g08980
malus_domestica	MD10G1213300.v1.1
prunus_persica	Prupe.4G129900_v2.0.a1
pyrus_communis	pycom05g21320 pycom05g21330 pycom05g23810 pycom10g18000
rosa_chinensis	RchiOBHm_Chr6g0274771
rosa_laevigata	RLG00000018664 RLG00000032745
rosa_multiflora	Rmu_co8270721.1_g000001 Rmu_co8337679.1_g000001 Rmu_sc0001938.1_g000004 Rmu_sc0006223.1_g000002 Rmu_sc0014273.1_g000001 Rmu_ssc0000027.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055330 Rroxscaffold_2G00121910 Rroxscaffold_2G00121920 Rroxscaffold_7G00193950
rosa_rugosa	Rorug06G0084300
rosa_samantha	Rh2AG294600 Rh2DG318500 Rh2DG318700 Rh5DG169500 Rh6AG200200 Rh6BG203700 Rh6CG203900 Rh6DG195300
rosa_wichuraiana	Rw5G015390 Rw6G017390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	189
AciI	CCGC	4 cut(s)	187, 189, 634, 725
AclWI	GGATC	3 cut(s)	104, 797, 810
AcuI	CTGAAG	4 cut(s)	261, 302, 309, 324
AfaI	GTAC	4 cut(s)	166, 569, 687, 816
AfiI	CCNNNNNNNGG	1 cut(s)	386
AgsI	TTSAA	3 cut(s)	344, 407, 539
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
Alw21I	GWGCWC	2 cut(s)	183, 766
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	3 cut(s)	104, 797, 810
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	2 cut(s)	109, 124
ApeKI	GCWGC	8 cut(s)	260, 263, 324, 356, 428, 527, 755, 940
AspLEI	GCGC	1 cut(s)	315
AspS9I	GGNCC	3 cut(s)	110, 125, 362
AsuHPI	GGTGA	3 cut(s)	47, 411, 860
AvaII	GGWCC	1 cut(s)	362
BaeGI	GKGCMC	1 cut(s)	106
BamHI	GGATCC	1 cut(s)	802
BbsI	GAAGAC	1 cut(s)	908
Bbv12I	GWGCWC	2 cut(s)	183, 766
BbvI	GCAGC	8 cut(s)	250, 272, 336, 368, 415, 539, 742, 952
BccI	CCATC	1 cut(s)	845
BceAI	ACGGC	3 cut(s)	491, 566, 602
BclI	TGATCA	1 cut(s)	582
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	2 cut(s)	30, 858
BfoI	RGCGCY	1 cut(s)	316
BisI	GCNGC	9 cut(s)	190, 261, 264, 325, 357, 429, 528, 756, 941
BlpI	GCTNAGC	1 cut(s)	776
BlsI	GCNGC	9 cut(s)	191, 262, 265, 326, 358, 430, 529, 757, 942
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	3 cut(s)	110, 125, 362
BmiI	GGNNCC	2 cut(s)	193, 804
BmrI	ACTGGG	1 cut(s)	793
BmsI	GCATC	2 cut(s)	217, 505
BmuI	ACTGGG	1 cut(s)	793
BpiI	GAAGAC	1 cut(s)	908
BpmI	CTGGAG	2 cut(s)	129, 771
Bpu10I	CCTNAGC	1 cut(s)	468
Bpu1102I	GCTNAGC	1 cut(s)	776
BsaBI	GATNNNNATC	1 cut(s)	801
BsaJI	CCNNGG	3 cut(s)	113, 187, 548
Bsc4I	CCNNNNNNNGG	1 cut(s)	386
Bse118I	RCCGGY	1 cut(s)	700
Bse1I	ACTGG	3 cut(s)	351, 788, 920
Bse8I	GATNNNNATC	1 cut(s)	801
BseDI	CCNNGG	3 cut(s)	113, 187, 548
BseGI	GGATG	5 cut(s)	132, 183, 232, 733, 832
BseJI	GATNNNNATC	1 cut(s)	801
BseLI	CCNNNNNNNGG	1 cut(s)	386
BseMII	CTCAG	4 cut(s)	48, 198, 446, 459
BseNI	ACTGG	3 cut(s)	351, 788, 920
BseRI	GAGGAG	3 cut(s)	163, 184, 854
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	8 cut(s)	250, 272, 336, 368, 415, 539, 742, 952
BsgI	GTGCAG	1 cut(s)	959
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	2 cut(s)	111, 126
BsiHKAI	GWGCWC	2 cut(s)	183, 766
BsiSI	CCGG	1 cut(s)	701
BslI	CCNNNNNNNGG	1 cut(s)	386
BsmAI	GTCTC	1 cut(s)	32
BsnI	GGCC	2 cut(s)	111, 126
Bsp1286I	GDGCHC	3 cut(s)	106, 183, 766
Bsp1407I	TGTACA	1 cut(s)	685
Bsp143I	GATC	4 cut(s)	49, 96, 582, 802
Bsp1720I	GCTNAGC	1 cut(s)	776
BspACI	CCGC	4 cut(s)	187, 189, 634, 725
BspANI	GGCC	2 cut(s)	111, 126
BspCNI	CTCAG	4 cut(s)	49, 199, 445, 460
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	193, 804
BspPI	GGATC	3 cut(s)	104, 797, 810
BspQI	GCTCTTC	1 cut(s)	771
BsrFI	RCCGGY	1 cut(s)	700
BsrGI	TGTACA	1 cut(s)	685
BsrI	ACTGG	3 cut(s)	351, 788, 920
BssAI	RCCGGY	1 cut(s)	700
BssECI	CCNNGG	3 cut(s)	113, 187, 548
BssMI	GATC	4 cut(s)	49, 96, 582, 802
BssT1I	CCWWGG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	685
Bst6I	CTCTTC	1 cut(s)	771
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstAUI	TGTACA	1 cut(s)	685
BstC8I	GCNNGC	2 cut(s)	636, 945
BstDEI	CTNAG	6 cut(s)	57, 207, 432, 468, 734, 776
BstDSI	CCRYGG	2 cut(s)	187, 548
BstF5I	GGATG	5 cut(s)	132, 183, 232, 733, 832
BstFNI	CGCG	1 cut(s)	189
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	4 cut(s)	52, 99, 585, 805
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	4 cut(s)	49, 96, 582, 802
BstMWI	GCNNNNNNNGC	7 cut(s)	299, 321, 356, 469, 524, 755, 761
BstNSI	RCATGY	1 cut(s)	692
BstSLI	GKGCMC	1 cut(s)	106
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	8 cut(s)	250, 272, 336, 368, 415, 539, 742, 952
BstV2I	GAAGAC	1 cut(s)	908
BstX2I	RGATCY	2 cut(s)	96, 802
BstYI	RGATCY	2 cut(s)	96, 802
BsuRI	GGCC	2 cut(s)	111, 126
BtgI	CCRYGG	2 cut(s)	187, 548
BtsCI	GGATG	5 cut(s)	132, 183, 232, 733, 832
BtsIMutI	CAGTG	3 cut(s)	681, 781, 927
Cac8I	GCNNGC	2 cut(s)	636, 945
CaiI	CAGNNNCTG	1 cut(s)	359
CfoI	GCGC	1 cut(s)	315
Cfr10I	RCCGGY	1 cut(s)	700
Cfr13I	GGNCC	3 cut(s)	110, 125, 362
Cfr42I	CCGCGG	1 cut(s)	190
Csp6I	GTAC	4 cut(s)	165, 568, 686, 815
CviAII	CATG	2 cut(s)	200, 689
CviQI	GTAC	4 cut(s)	165, 568, 686, 815
DdeI	CTNAG	6 cut(s)	57, 207, 432, 468, 734, 776
DpnI	GATC	4 cut(s)	51, 98, 584, 804
DpnII	GATC	4 cut(s)	49, 96, 582, 802
DraI	TTTAAA	1 cut(s)	648
Eam1104I	CTCTTC	1 cut(s)	771
EarI	CTCTTC	1 cut(s)	771
Eco130I	CCWWGG	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	362
Eco57I	CTGAAG	4 cut(s)	261, 302, 309, 324
EcoT14I	CCWWGG	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	2 cut(s)	203, 692
FatI	CATG	2 cut(s)	199, 688
FauI	CCCGC	1 cut(s)	627
FbaI	TGATCA	1 cut(s)	582
Fnu4HI	GCNGC	9 cut(s)	190, 261, 264, 325, 357, 429, 528, 756, 941
FokI	GGATG	5 cut(s)	119, 170, 239, 740, 839
Fsp4HI	GCNGC	9 cut(s)	190, 261, 264, 325, 357, 429, 528, 756, 941
FspBI	CTAG	2 cut(s)	30, 858
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	9 cut(s)	190, 261, 264, 325, 357, 429, 528, 756, 941
GsuI	CTGGAG	2 cut(s)	129, 771
HaeII	RGCGCY	1 cut(s)	316
HaeIII	GGCC	2 cut(s)	111, 126
HapII	CCGG	1 cut(s)	701
HhaI	GCGC	1 cut(s)	315
Hin1II	CATG	2 cut(s)	203, 692
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HindIII	AAGCTT	2 cut(s)	408, 712
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	1 cut(s)	701
HphI	GGTGA	3 cut(s)	47, 411, 860
Hpy166II	GTNNAC	2 cut(s)	681, 744
Hpy188I	TCNGA	6 cut(s)	208, 235, 280, 321, 439, 709
Hpy188III	TCNNGA	2 cut(s)	146, 794
Hpy8I	GTNNAC	2 cut(s)	681, 744
HpyAV	CCTTC	5 cut(s)	326, 624, 659, 732, 904
HpyCH4III	ACNGT	1 cut(s)	685
HpyCH4V	TGCA	5 cut(s)	260, 661, 674, 758, 940
HpyF10VI	GCNNNNNNNGC	7 cut(s)	299, 321, 356, 469, 524, 755, 761
HpyF3I	CTNAG	6 cut(s)	57, 207, 432, 468, 734, 776
Hsp92II	CATG	2 cut(s)	203, 692
HspAI	GCGC	1 cut(s)	313
Ksp22I	TGATCA	1 cut(s)	582
KspI	CCGCGG	1 cut(s)	190
Kzo9I	GATC	4 cut(s)	49, 96, 582, 802
LguI	GCTCTTC	1 cut(s)	771
LmnI	GCTCC	3 cut(s)	148, 197, 752
Lsp1109I	GCAGC	8 cut(s)	250, 272, 336, 368, 415, 539, 742, 952
LweI	GCATC	2 cut(s)	217, 505
MaeI	CTAG	2 cut(s)	30, 858
MaeIII	GTNAC	2 cut(s)	283, 371
MalI	GATC	4 cut(s)	51, 98, 584, 804
MboI	GATC	4 cut(s)	49, 96, 582, 802
MboII	GAAGA	5 cut(s)	267, 475, 758, 908, 919
MfeI	CAATTG	1 cut(s)	599
MflI	RGATCY	2 cut(s)	96, 802
MhlI	GDGCHC	3 cut(s)	106, 183, 766
MluCI	AATT	2 cut(s)	212, 599
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	9 cut(s)	184, 205, 463, 646, 823, 832, 876, 919, 951
MseI	TTAA	4 cut(s)	90, 510, 647, 967
MslI	CAYNNNNRTG	1 cut(s)	693
MspA1I	CMGCKG	4 cut(s)	189, 263, 359, 530
MspI	CCGG	1 cut(s)	701
MunI	CAATTG	1 cut(s)	599
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	7 cut(s)	299, 321, 356, 469, 524, 755, 761
NdeII	GATC	4 cut(s)	49, 96, 582, 802
NlaIII	CATG	2 cut(s)	203, 692
NlaIV	GGNNCC	2 cut(s)	193, 804
NmuCI	GTSAC	1 cut(s)	371
NspI	RCATGY	1 cut(s)	692
PciSI	GCTCTTC	1 cut(s)	771
PkrI	GCNGC	9 cut(s)	191, 262, 265, 326, 358, 430, 529, 757, 942
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PspN4I	GGNNCC	2 cut(s)	193, 804
PspPI	GGNCC	3 cut(s)	110, 125, 362
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	2 cut(s)	96, 802
PvuII	CAGCTG	3 cut(s)	263, 359, 530
RsaI	GTAC	4 cut(s)	166, 569, 687, 816
RsaNI	GTAC	4 cut(s)	165, 568, 686, 815
RseI	CAYNNNNRTG	1 cut(s)	693
SacII	CCGCGG	1 cut(s)	190
SapI	GCTCTTC	1 cut(s)	771
SaqAI	TTAA	4 cut(s)	90, 510, 647, 967
SatI	GCNGC	9 cut(s)	190, 261, 264, 325, 357, 429, 528, 756, 941
Sau3AI	GATC	4 cut(s)	49, 96, 582, 802
Sau96I	GGNCC	3 cut(s)	110, 125, 362
SchI	GAGTC	1 cut(s)	164
SduI	GDGCHC	3 cut(s)	106, 183, 766
SfaNI	GCATC	2 cut(s)	217, 505
Sfr303I	CCGCGG	1 cut(s)	190
SgrBI	CCGCGG	1 cut(s)	190
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	1 cut(s)	693
Sse9I	AATT	2 cut(s)	212, 599
SsiI	CCGC	4 cut(s)	187, 189, 634, 725
SspMI	CTAG	2 cut(s)	30, 858
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	685
TasI	AATT	2 cut(s)	212, 599
TatI	WGTACW	2 cut(s)	567, 685
TauI	GCSGC	1 cut(s)	192
Tru1I	TTAA	4 cut(s)	90, 510, 647, 967
Tru9I	TTAA	4 cut(s)	90, 510, 647, 967
TscAI	CASTG	3 cut(s)	688, 788, 927
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	8 cut(s)	260, 263, 324, 356, 428, 527, 755, 940
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	1 cut(s)	167
TspGWI	ACGGA	2 cut(s)	839, 919
TspRI	CASTG	3 cut(s)	688, 788, 927
VpaK11BI	GGWCC	1 cut(s)	362
XceI	RCATGY	1 cut(s)	692
XspI	CTAG	2 cut(s)	30, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.