Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006944

Physical Location & Seq

Genomic Coordinates Reverse (-)

23270854 .. 23271564

Gene Structure 711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g30110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCAAAAGGGTCTTTAGATAAATGGATATTCAATAAAAAGAAGGATGACCATTTATTGGATTGGAACACAAGATTCAGTATTGCATTGGGGACTGCAAAAGGGTTGGCTTATCTCCATGAAGAATGTGAAGAGAAGATTGTCCACTGTGATATAAAACCTGAAAATGTTCTTCTTGATGAAAATTTCAATGCCAAAGTTTCAGATTTCGGTTTGGCTAAGCTGATGAACCGGGACCAATGCCTTGCACACACGACGCTGAGGGGAACGAGAGGGTACCTCGCACCAGAATGGATCACCAATGCTGCCATATCAGAGAAAAGTGACGTTTATAGTTACGGCATGGTTTTACTTGAAATCATTGGTGGAAAAAGGAATTTTGCTCCAGGGGAGAGTTCGGGAAAATCTCACTTCCCATACTATGCCTTCAAACTTCTGGAAGAAGGAAACTTGAAAGAATTCATTGATCCTAAGTTAGATGTGGATGAAAAAGATGAGAAAGTAGTGGCTGCAATCGAAGTTGCATTGTGGTGTATTCAGGATGAGATGCAAATGAGACCTCCGATGACTAGAGTGGTGCAAATGCTTGAAGGTTTTTGTGATTTACCACCACCGCTAACATCCTCCCCGCCCATCAGGTCCTCATTTAAGTTTCTTACGTTGGAACAGCAAAGAAGCTACTTCACCAGCAGGACTCACCGGTTACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 Pkinase

Protein Analysis

237

Amino Acids

26.95

Weight (kDa)

5.91

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 196	8.5e-26	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	4 - 194	6.8e-32	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006944)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30110
malus_domestica	MD15G1122900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0367661 RchiOBHm_Chr6g0297951
rosa_laevigata	RLG00000011549 RLG00000027270 RLG00000027276
rosa_multiflora	Rmu_co8343541.1_g000001 Rmu_sc0001091.1_g000014 Rmu_sc0008470.1_g000008 Rmu_sc0009775.1_g000007 Rmu_sc0027455.1_g000002
rosa_roxburghii	Rroxscaffold_4G00289420 Rroxscaffold_5G00333540 Rroxscaffold_5G00333550
rosa_rugosa	Rorug01G0336000 Rorug01G0336100 Rorug03G0303500 Rorug06G0277000
rosa_samantha	Rh1AG343100 Rh1BG304200 Rh1DG336500 Rh4BG005400 Rh6BG395800 Rh6BG396000
rosa_wichuraiana	Rw1G030530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	276
AccB1I	GGYRCC	1 cut(s)	276
AccB7I	CCANNNNNTGG	1 cut(s)	58
AciI	CCGC	2 cut(s)	614, 629
AclWI	GGATC	2 cut(s)	302, 461
AcsI	RAATTY	3 cut(s)	184, 376, 458
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgeI	ACCGGT	1 cut(s)	699
AgsI	TTSAA	6 cut(s)	34, 190, 356, 430, 454, 590
AjnI	CCWGG	1 cut(s)	385
AluBI	AGCT	2 cut(s)	223, 678
AluI	AGCT	2 cut(s)	223, 678
Alw26I	GTCTC	1 cut(s)	550
AlwI	GGATC	2 cut(s)	302, 461
ApeKI	GCWGC	2 cut(s)	305, 509
ApoI	RAATTY	3 cut(s)	184, 376, 458
AsiGI	ACCGGT	1 cut(s)	699
Asp700I	GAANNNNTTC	2 cut(s)	168, 458
Asp718I	GGTACC	1 cut(s)	276
AspS9I	GGNCC	2 cut(s)	235, 639
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	3 cut(s)	289, 676, 689
AvaII	GGWCC	2 cut(s)	235, 639
BanI	GGYRCC	1 cut(s)	276
BbvCI	CCTCAGC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	292, 496
BccI	CCATC	1 cut(s)	641
BceAI	ACGGC	1 cut(s)	355
BciT130I	CCWGG	1 cut(s)	387
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	550
BfaI	CTAG	1 cut(s)	570
BfmI	CTRYAG	1 cut(s)	707
BisI	GCNGC	2 cut(s)	306, 510
BlpI	GCTNAGC	1 cut(s)	219
BlsI	GCNGC	2 cut(s)	307, 511
Bme1390I	CCNGG	2 cut(s)	233, 387
Bme18I	GGWCC	2 cut(s)	235, 639
BmgT120I	GGNCC	2 cut(s)	235, 639
BmiI	GGNNCC	2 cut(s)	236, 278
BmrFI	CCNGG	2 cut(s)	233, 387
BmsI	GCATC	1 cut(s)	537
BplI	GAGNNNNNCTC	2 cut(s)	264, 296
BpmI	CTGGAG	1 cut(s)	369
Bpu10I	CCTNAGC	1 cut(s)	260
Bpu1102I	GCTNAGC	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	233
BsaI	GGTCTC	1 cut(s)	550
BsaJI	CCNNGG	1 cut(s)	386
BsaWI	WCCGGW	1 cut(s)	699
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse118I	RCCGGY	1 cut(s)	699
BseBI	CCWGG	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	386
BseGI	GGATG	4 cut(s)	52, 490, 547, 620
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	251
BseXI	GCAGC	2 cut(s)	292, 496
BshNI	GGYRCC	1 cut(s)	276
BshTI	ACCGGT	1 cut(s)	699
BsiSI	CCGG	2 cut(s)	232, 700
BslFI	GGGAC	2 cut(s)	106, 248
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	550
BsmFI	GGGAC	2 cut(s)	106, 248
Bso31I	GGTCTC	1 cut(s)	550
Bsp143I	GATC	2 cut(s)	294, 466
Bsp1720I	GCTNAGC	1 cut(s)	219
BspACI	CCGC	2 cut(s)	614, 629
BspCNI	CTCAG	1 cut(s)	252
BspLI	GGNNCC	2 cut(s)	236, 278
BspPI	GGATC	2 cut(s)	302, 461
BspT107I	GGYRCC	1 cut(s)	276
BspTNI	GGTCTC	1 cut(s)	550
BsrFI	RCCGGY	1 cut(s)	699
BssAI	RCCGGY	1 cut(s)	699
BssECI	CCNNGG	1 cut(s)	386
BssMI	GATC	2 cut(s)	294, 466
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	1 cut(s)	149
Bst6I	CTCTTC	1 cut(s)	126
BstDEI	CTNAG	3 cut(s)	219, 260, 471
BstF5I	GGATG	4 cut(s)	52, 490, 547, 620
BstKTI	GATC	2 cut(s)	297, 469
BstMAI	GTCTC	1 cut(s)	550
BstMBI	GATC	2 cut(s)	294, 466
BstNI	CCWGG	1 cut(s)	387
BstSCI	CCNGG	2 cut(s)	231, 385
BstSFI	CTRYAG	1 cut(s)	707
BstV1I	GCAGC	2 cut(s)	292, 496
BtsCI	GGATG	4 cut(s)	52, 490, 547, 620
BtsIMutI	CAGTG	1 cut(s)	145
Cfr10I	RCCGGY	1 cut(s)	699
Cfr13I	GGNCC	2 cut(s)	235, 639
CseI	GACGC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	277
CspAI	ACCGGT	1 cut(s)	699
CviAII	CATG	2 cut(s)	119, 343
CviJI	RGCY	5 cut(s)	110, 218, 223, 509, 678
CviKI_1	RGCY	5 cut(s)	110, 218, 223, 509, 678
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	3 cut(s)	219, 260, 471
DpnI	GATC	2 cut(s)	296, 468
DpnII	GATC	2 cut(s)	294, 466
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	550
Eco47I	GGWCC	2 cut(s)	235, 639
EcoO109I	RGGNCCY	1 cut(s)	639
EcoRI	GAATTC	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	385
FaeI	CATG	2 cut(s)	122, 346
FaiI	YATR	8 cut(s)	120, 155, 311, 333, 344, 418, 423, 709
FaqI	GGGAC	2 cut(s)	106, 248
FatI	CATG	2 cut(s)	118, 342
FauI	CCCGC	1 cut(s)	636
Fnu4HI	GCNGC	2 cut(s)	306, 510
FokI	GGATG	4 cut(s)	59, 497, 554, 607
Fsp4HI	GCNGC	2 cut(s)	306, 510
FspBI	CTAG	1 cut(s)	570
GluI	GCNGC	2 cut(s)	306, 510
GsuI	CTGGAG	1 cut(s)	369
HapII	CCGG	2 cut(s)	232, 700
HgaI	GACGC	1 cut(s)	265
Hin1II	CATG	2 cut(s)	122, 346
HinfI	GANTC	2 cut(s)	75, 694
HpaII	CCGG	2 cut(s)	232, 700
HphI	GGTGA	3 cut(s)	289, 676, 689
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	3 cut(s)	205, 316, 564
Hpy188III	TCNNGA	4 cut(s)	176, 399, 437, 539
Hpy8I	GTNNAC	1 cut(s)	145
Hpy99I	CGWCG	1 cut(s)	259
HpyAV	CCTTC	4 cut(s)	37, 436, 437, 584
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	2 cut(s)	327, 659
HpyCH4V	TGCA	7 cut(s)	86, 98, 248, 512, 524, 550, 580
HpyF3I	CTNAG	3 cut(s)	219, 260, 471
HpySE526I	ACGT	2 cut(s)	327, 659
Hsp92II	CATG	2 cut(s)	122, 346
KpnI	GGTACC	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	294, 466
LmnI	GCTCC	1 cut(s)	388
Lsp1109I	GCAGC	2 cut(s)	292, 496
LweI	GCATC	1 cut(s)	537
MaeI	CTAG	1 cut(s)	570
MaeII	ACGT	2 cut(s)	327, 659
MaeIII	GTNAC	3 cut(s)	323, 335, 702
MalI	GATC	2 cut(s)	296, 468
MboI	GATC	2 cut(s)	294, 466
MboII	GAAGA	5 cut(s)	134, 143, 148, 164, 452
MluCI	AATT	3 cut(s)	184, 376, 458
MlyI	GAGTC	1 cut(s)	688
MmeI	TCCRAC	1 cut(s)	642
MnlI	CCTC	6 cut(s)	255, 266, 290, 570, 634, 652
MroXI	GAANNNNTTC	2 cut(s)	168, 458
MseI	TTAA	1 cut(s)	648
MslI	CAYNNNNRTG	2 cut(s)	289, 529
MspI	CCGG	2 cut(s)	232, 700
MspR9I	CCNGG	2 cut(s)	233, 387
MvaI	CCWGG	1 cut(s)	387
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	2 cut(s)	294, 466
NlaIII	CATG	2 cut(s)	122, 346
NlaIV	GGNNCC	2 cut(s)	236, 278
NmuCI	GTSAC	1 cut(s)	323
PdmI	GAANNNNTTC	2 cut(s)	168, 458
PfeI	GAWTC	1 cut(s)	75
PflMI	CCANNNNNTGG	1 cut(s)	58
PinAI	ACCGGT	1 cut(s)	699
PkrI	GCNGC	2 cut(s)	307, 511
PleI	GAGTC	1 cut(s)	688
PpsI	GAGTC	1 cut(s)	688
PpuMI	RGGWCCY	1 cut(s)	639
Psp5II	RGGWCCY	1 cut(s)	639
Psp6I	CCWGG	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	385
PspN4I	GGNNCC	2 cut(s)	236, 278
PspPI	GGNCC	2 cut(s)	235, 639
PspPPI	RGGWCCY	1 cut(s)	639
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	2 cut(s)	289, 529
SaqAI	TTAA	1 cut(s)	648
SatI	GCNGC	2 cut(s)	306, 510
Sau3AI	GATC	2 cut(s)	294, 466
Sau96I	GGNCC	2 cut(s)	235, 639
SchI	GAGTC	1 cut(s)	688
ScrFI	CCNGG	2 cut(s)	233, 387
SetI	ASST	9 cut(s)	163, 225, 282, 330, 562, 595, 641, 662, 680
SfaNI	GCATC	1 cut(s)	537
SfcI	CTRYAG	1 cut(s)	707
SinI	GGWCC	2 cut(s)	235, 639
SmiMI	CAYNNNNRTG	2 cut(s)	289, 529
Sse9I	AATT	3 cut(s)	184, 376, 458
SsiI	CCGC	2 cut(s)	614, 629
SspMI	CTAG	1 cut(s)	570
StyD4I	CCNGG	2 cut(s)	231, 385
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	2 cut(s)	330, 662
TaqI	TCGA	1 cut(s)	516
TasI	AATT	3 cut(s)	184, 376, 458
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	1 cut(s)	648
Tru9I	TTAA	1 cut(s)	648
TscAI	CASTG	1 cut(s)	152
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	2 cut(s)	305, 509
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	5 cut(s)	135, 195, 242, 451, 501
TspRI	CASTG	1 cut(s)	152
Van91I	CCANNNNNTGG	1 cut(s)	58
VpaK11BI	GGWCC	2 cut(s)	235, 639
XapI	RAATTY	3 cut(s)	184, 376, 458
XmnI	GAANNNNTTC	2 cut(s)	168, 458
XspI	CTAG	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.