Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001091.1

Orthogroup ID

OG0006944

Physical Location & Seq

Genomic Coordinates Forward (+)

61839 .. 62168

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001091.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ctgctgctggagatcattagcggaagaaagaacttggacctagatgatgaacgttatcttccattgtatgcctccaaaatgtttgaagaagggaaactcaaggacatcttcgaccccaagatgaggatagatgacgttgacgagagggtttctactgcggttatggtagcattgtggtgtatacagttagacatgactttgaggccaccaatgaccaaggttgtccaaatgcttcaaggcatctgctctgttcctcagcctccaattccgcggctttatccaaatgaattacagaagggggggacttcctcgggtccatcggactgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

109

Amino Acids

12.32

Weight (kDa)

4.87

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006944)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30110
malus_domestica	MD15G1122900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0367661 RchiOBHm_Chr6g0297951
rosa_laevigata	RLG00000011549 RLG00000027270 RLG00000027276
rosa_multiflora	Rmu_co8343541.1_g000001 Rmu_sc0001091.1_g000014 Rmu_sc0008470.1_g000008 Rmu_sc0009775.1_g000007 Rmu_sc0027455.1_g000002
rosa_roxburghii	Rroxscaffold_4G00289420 Rroxscaffold_5G00333540 Rroxscaffold_5G00333550
rosa_rugosa	Rorug01G0336000 Rorug01G0336100 Rorug03G0303500 Rorug06G0277000
rosa_samantha	Rh1AG343100 Rh1BG304200 Rh1DG336500 Rh4BG005400 Rh6BG395800 Rh6BG396000
rosa_wichuraiana	Rw1G030530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	181
AccII	CGCG	1 cut(s)	271
AciI	CCGC	4 cut(s)	21, 158, 269, 271
AclI	AACGTT	1 cut(s)	52
AfiI	CCNNNNNNNGG	1 cut(s)	123
AgsI	TTSAA	2 cut(s)	86, 236
Ama87I	CYCGRG	1 cut(s)	310
AoxI	GGCC	1 cut(s)	203
ApeKI	GCWGC	1 cut(s)	4
AspS9I	GGNCC	2 cut(s)	37, 314
AvaI	CYCGRG	1 cut(s)	310
AvaII	GGWCC	2 cut(s)	37, 314
BbvCI	CCTCAGC	1 cut(s)	255
BccI	CCATC	1 cut(s)	325
BfaI	CTAG	2 cut(s)	41, 328
BisI	GCNGC	2 cut(s)	5, 272
BlsI	GCNGC	2 cut(s)	6, 273
Bme18I	GGWCC	2 cut(s)	37, 314
BmeT110I	CYCGRG	1 cut(s)	310
BmgT120I	GGNCC	2 cut(s)	37, 314
BmiI	GGNNCC	1 cut(s)	315
BmsI	GCATC	1 cut(s)	249
BpmI	CTGGAG	1 cut(s)	29
Bpu10I	CCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	83
BsaJI	CCNNGG	3 cut(s)	216, 269, 309
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
BseDI	CCNNGG	3 cut(s)	216, 269, 309
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	269
Bsh1236I	CGCG	1 cut(s)	271
BshFI	GGCC	1 cut(s)	205
BsiHKCI	CYCGRG	1 cut(s)	310
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	316
BsnI	GGCC	1 cut(s)	205
BsoBI	CYCGRG	1 cut(s)	310
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	4 cut(s)	21, 158, 269, 271
BspANI	GGCC	1 cut(s)	205
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	315
BssECI	CCNNGG	3 cut(s)	216, 269, 309
BssMI	GATC	1 cut(s)	12
BssNAI	GTATAC	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	216
Bst1107I	GTATAC	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	255
BstDSI	CCRYGG	1 cut(s)	269
BstFNI	CGCG	1 cut(s)	271
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstUI	CGCG	1 cut(s)	271
BstZ17I	GTATAC	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	205
BtgI	CCRYGG	1 cut(s)	269
Cfr13I	GGNCC	2 cut(s)	37, 314
Cfr42I	CCGCGG	1 cut(s)	272
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	3 cut(s)	205, 259, 274
CviKI_1	RGCY	3 cut(s)	205, 259, 274
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	216
Eco47I	GGWCC	2 cut(s)	37, 314
Eco88I	CYCGRG	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	1 cut(s)	196
FaiI	YATR	4 cut(s)	69, 164, 182, 194
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	1 cut(s)	192
FblI	GTMKAC	1 cut(s)	181
Fnu4HI	GCNGC	2 cut(s)	5, 272
Fsp4HI	GCNGC	2 cut(s)	5, 272
FspBI	CTAG	2 cut(s)	41, 328
GluI	GCNGC	2 cut(s)	5, 272
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	205
Hin1II	CATG	1 cut(s)	196
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
Hpy166II	GTNNAC	2 cut(s)	139, 182
Hpy188I	TCNGA	1 cut(s)	322
Hpy8I	GTNNAC	2 cut(s)	139, 182
HpyAV	CCTTC	2 cut(s)	83, 289
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4IV	ACGT	2 cut(s)	52, 135
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	2 cut(s)	52, 135
Hsp92II	CATG	1 cut(s)	196
KspI	CCGCGG	1 cut(s)	272
Kzo9I	GATC	1 cut(s)	12
LweI	GCATC	1 cut(s)	249
MaeI	CTAG	2 cut(s)	41, 328
MaeII	ACGT	2 cut(s)	52, 135
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	4 cut(s)	36, 50, 98, 100
MluCI	AATT	2 cut(s)	264, 287
MnlI	CCTC	7 cut(s)	82, 117, 138, 195, 264, 270, 319
MslI	CAYNNNNRTG	1 cut(s)	175
MspA1I	CMGCKG	1 cut(s)	271
MvnI	CGCG	1 cut(s)	271
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	1 cut(s)	315
PkrI	GCNGC	2 cut(s)	6, 273
Psp1406I	AACGTT	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	2 cut(s)	37, 314
RseI	CAYNNNNRTG	1 cut(s)	175
SacII	CCGCGG	1 cut(s)	272
SatI	GCNGC	2 cut(s)	5, 272
Sau3AI	GATC	1 cut(s)	12
Sau96I	GGNCC	2 cut(s)	37, 314
SetI	ASST	4 cut(s)	42, 55, 138, 222
SfaNI	GCATC	1 cut(s)	249
Sfr303I	CCGCGG	1 cut(s)	272
SgrBI	CCGCGG	1 cut(s)	272
SinI	GGWCC	2 cut(s)	37, 314
SmiMI	CAYNNNNRTG	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	2 cut(s)	264, 287
SsiI	CCGC	4 cut(s)	21, 158, 269, 271
SspMI	CTAG	2 cut(s)	41, 328
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	186
TaiI	ACGT	2 cut(s)	55, 138
TaqI	TCGA	1 cut(s)	111
TasI	AATT	2 cut(s)	264, 287
TauI	GCSGC	1 cut(s)	274
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	2 cut(s)	63, 300
VpaK11BI	GGWCC	2 cut(s)	37, 314
XmiI	GTMKAC	1 cut(s)	181
XspI	CTAG	2 cut(s)	41, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.