Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006944

Physical Location & Seq

Genomic Coordinates Reverse (-)

937383 .. 941344

Gene Structure 3962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG005400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGGAGGTTGGAATCTCATTCATTTGGTAAGCTTCATACATTTGTCTGTTCTCCTTTTGTCTGAAACCTGCCTGGCGGCTAGTGTTCGAAATTTTGGGAAAATTAGTCCGGGGTTTCAAGGAGCTCAGCAGAATTGGATCGACAATGATGGGTTGTTTCTCTTGTCGAACCAATCCGATTTTGCTTTTGGCTTCGTCACCACTTCTCAAGATGTCACTTTGTTCCTGCTCTGTATTGTCCACATGGACAGCAGGAATATAGTATGGACTGCAAATAGGGGCTCCCCAGTTTCTAATTCTAATTCTGATAAATGGATTTTCAAGAAAACAAATGAAGAATGCTTATTGGATTGGGAGAAAAGGTTCAACATAGCAGTGGGTACTGCCAAAGGACTAGCTTATCTCCATGAACATTGTGATTCAAAGATTATTCACTGTGACATAAAGCCTCAAAACGTGCTCCTCGACAACAATTACCATGCCAAAGTCGCAGATTTCGGTTTGGCAAAGCTAATGACCAAGGAGCAGAGCCATGTTTTCACAACACTTAGAGGAACTCGGGGTTACCTTGCGCCAGAGTGGATCACAAACCGCGCTATATCGGAGAAGAGTGATGTGTATAGCTATGGAATGCTGTTGCTAGAGATTATCGGTGGGAGAAAGAACTATGACCAATCAGAAAGTTCTGAAAAATCTCAATTTCCATCCTATGCCTTCAAGATGCTAAAAGAAGGCAAAATGAAGGACATTGTCGACTCCAAGCTGAAGATAGATAACGCCGACGAGAGGGTTTCTACCGCGATTATTGTTGCATTGTGGTGTATACAGCAAGACATGTCTCTGAGGCCATCGATGGCCAAGGTTGTCAAAATCTTTGAAGGGGTCTGTCCTGTTCCTCAGCCTCCAACTTCCTCAGCAATGATTTCTTCAACAATGACTTCCTCCGGACCAACGTGCTGCAACAGTGATGCATATTTGTCTGCAGAGCATCTTTCTGGACCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

335

Amino Acids

37.31

Weight (kDa)

6.75

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	107 - 290	5.6e-35	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	116 - 290	5.4e-25	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006944)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30110
malus_domestica	MD15G1122900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0367661 RchiOBHm_Chr6g0297951
rosa_laevigata	RLG00000011549 RLG00000027270 RLG00000027276
rosa_multiflora	Rmu_co8343541.1_g000001 Rmu_sc0001091.1_g000014 Rmu_sc0008470.1_g000008 Rmu_sc0009775.1_g000007 Rmu_sc0027455.1_g000002
rosa_roxburghii	Rroxscaffold_4G00289420 Rroxscaffold_5G00333540 Rroxscaffold_5G00333550
rosa_rugosa	Rorug01G0336000 Rorug01G0336100 Rorug03G0303500 Rorug06G0277000
rosa_samantha	Rh1AG343100 Rh1BG304200 Rh1DG336500 Rh4BG005400 Rh6BG395800 Rh6BG396000
rosa_wichuraiana	Rw1G030530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	77
AccI	GTMKAC	2 cut(s)	753, 823
AccII	CGCG	2 cut(s)	594, 800
AccIII	TCCGGA	1 cut(s)	944
AciI	CCGC	3 cut(s)	77, 592, 798
AclWI	GGATC	2 cut(s)	146, 590
AcoI	YGGCCR	1 cut(s)	855
AcsI	RAATTY	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	785
AfaI	GTAC	1 cut(s)	382
AfiI	CCNNNNNNNGG	1 cut(s)	786
AflIII	ACRYGT	1 cut(s)	834
AgsI	TTSAA	7 cut(s)	119, 322, 367, 423, 718, 878, 930
AjnI	CCWGG	1 cut(s)	72
AloI	GAACNNNNNNTCC	2 cut(s)	347, 379
AluBI	AGCT	6 cut(s)	33, 125, 398, 511, 624, 763
AluI	AGCT	6 cut(s)	33, 125, 398, 511, 624, 763
Alw21I	GWGCWC	2 cut(s)	127, 462
Alw26I	GTCTC	1 cut(s)	843
AlwI	GGATC	2 cut(s)	146, 590
Ama87I	CYCGRG	1 cut(s)	558
Aor13HI	TCCGGA	1 cut(s)	944
AoxI	GGCC	2 cut(s)	845, 855
ApeKI	GCWGC	1 cut(s)	957
ApoI	RAATTY	1 cut(s)	91
Asp700I	GAANNNNTTC	1 cut(s)	362
AspLEI	GCGC	2 cut(s)	574, 596
AspS9I	GGNCC	2 cut(s)	947, 998
AsuC2I	CCSGG	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	190
AsuII	TTCGAA	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	558
AvaII	GGWCC	2 cut(s)	947, 998
BalI	TGGCCA	1 cut(s)	857
BanII	GRGCYC	2 cut(s)	127, 284
Bbv12I	GWGCWC	2 cut(s)	127, 462
BbvCI	CCTCAGC	2 cut(s)	897, 913
BbvI	GCAGC	1 cut(s)	944
BccI	CCATC	4 cut(s)	143, 712, 847, 856
BciT130I	CCWGG	1 cut(s)	74
BcnI	CCSGG	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	843
BfaI	CTAG	3 cut(s)	81, 395, 641
BfmI	CTRYAG	1 cut(s)	981
BfuAI	ACCTGC	1 cut(s)	77
BisI	GCNGC	2 cut(s)	78, 958
BlpI	GCTNAGC	1 cut(s)	126
BlsI	GCNGC	2 cut(s)	79, 959
Bme1390I	CCNGG	2 cut(s)	74, 111
Bme18I	GGWCC	2 cut(s)	947, 998
BmeT110I	CYCGRG	1 cut(s)	558
BmgT120I	GGNCC	2 cut(s)	947, 998
BmiI	GGNNCC	1 cut(s)	283
BmrFI	CCNGG	2 cut(s)	74, 111
BmrI	ACTGGG	1 cut(s)	281
BmsI	GCATC	3 cut(s)	711, 958, 997
BmuI	ACTGGG	1 cut(s)	281
Bpu10I	CCTNAGC	2 cut(s)	897, 913
Bpu1102I	GCTNAGC	1 cut(s)	126
Bpu14I	TTCGAA	1 cut(s)	88
BpuEI	CTTGAG	1 cut(s)	192
BpuMI	CCSGG	1 cut(s)	111
Bsa29I	ATCGAT	1 cut(s)	851
BsaJI	CCNNGG	3 cut(s)	110, 519, 858
BsaWI	WCCGGW	1 cut(s)	944
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bsc4I	CCNNNNNNNGG	1 cut(s)	786
Bse1I	ACTGG	1 cut(s)	287
Bse3DI	GCAATG	1 cut(s)	924
BseAI	TCCGGA	1 cut(s)	944
BseBI	CCWGG	1 cut(s)	74
BseCI	ATCGAT	1 cut(s)	851
BseDI	CCNNGG	3 cut(s)	110, 519, 858
BseGI	GGATG	1 cut(s)	704
BseLI	CCNNNNNNNGG	1 cut(s)	786
BseMI	GCAATG	1 cut(s)	924
BseMII	CTCAG	4 cut(s)	140, 833, 911, 927
BseNI	ACTGG	1 cut(s)	287
BseRI	GAGGAG	1 cut(s)	452
BseXI	GCAGC	1 cut(s)	944
Bsh1236I	CGCG	2 cut(s)	594, 800
BshFI	GGCC	2 cut(s)	847, 857
BshVI	ATCGAT	1 cut(s)	851
BsiHKAI	GWGCWC	2 cut(s)	127, 462
BsiHKCI	CYCGRG	1 cut(s)	558
BsiSI	CCGG	2 cut(s)	110, 945
BslI	CCNNNNNNNGG	1 cut(s)	786
BsmAI	GTCTC	1 cut(s)	843
BsmI	GAATGC	2 cut(s)	344, 636
BsnI	GGCC	2 cut(s)	847, 857
BsoBI	CYCGRG	1 cut(s)	558
Bsp119I	TTCGAA	1 cut(s)	88
Bsp1286I	GDGCHC	3 cut(s)	127, 284, 462
Bsp13I	TCCGGA	1 cut(s)	944
Bsp143I	GATC	2 cut(s)	138, 582
Bsp1720I	GCTNAGC	1 cut(s)	126
BspACI	CCGC	3 cut(s)	77, 592, 798
BspANI	GGCC	2 cut(s)	847, 857
BspCNI	CTCAG	4 cut(s)	139, 834, 910, 926
BspDI	ATCGAT	1 cut(s)	851
BspEI	TCCGGA	1 cut(s)	944
BspFNI	CGCG	2 cut(s)	594, 800
BspLI	GGNNCC	1 cut(s)	283
BspMAI	CTGCAG	1 cut(s)	985
BspMI	ACCTGC	1 cut(s)	77
BspPI	GGATC	2 cut(s)	146, 590
BspT104I	TTCGAA	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	924
BsrI	ACTGG	1 cut(s)	287
BssECI	CCNNGG	3 cut(s)	110, 519, 858
BssMI	GATC	2 cut(s)	138, 582
BssNAI	GTATAC	1 cut(s)	824
BssT1I	CCWWGG	2 cut(s)	519, 858
Bst1107I	GTATAC	1 cut(s)	824
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	2 cut(s)	437, 965
Bst6I	CTCTTC	1 cut(s)	602
BstBI	TTCGAA	1 cut(s)	88
BstDEI	CTNAG	5 cut(s)	126, 548, 842, 897, 913
BstEII	GGTNACC	1 cut(s)	563
BstF5I	GGATG	1 cut(s)	704
BstFNI	CGCG	2 cut(s)	594, 800
BstHHI	GCGC	2 cut(s)	574, 596
BstKTI	GATC	2 cut(s)	141, 585
BstMAI	GTCTC	1 cut(s)	843
BstMBI	GATC	2 cut(s)	138, 582
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstNI	CCWGG	1 cut(s)	74
BstNSI	RCATGY	1 cut(s)	838
BstPI	GGTNACC	1 cut(s)	563
BstSCI	CCNGG	2 cut(s)	72, 109
BstSFI	CTRYAG	1 cut(s)	981
BstUI	CGCG	2 cut(s)	594, 800
BstV1I	GCAGC	1 cut(s)	944
BstZ17I	GTATAC	1 cut(s)	824
Bsu15I	ATCGAT	1 cut(s)	851
BsuRI	GGCC	2 cut(s)	847, 857
BsuTUI	ATCGAT	1 cut(s)	851
BtsCI	GGATG	1 cut(s)	704
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	3 cut(s)	381, 433, 970
BveI	ACCTGC	1 cut(s)	77
CfoI	GCGC	2 cut(s)	574, 596
Cfr13I	GGNCC	2 cut(s)	947, 998
ClaI	ATCGAT	1 cut(s)	851
Csp6I	GTAC	1 cut(s)	381
CviAII	CATG	5 cut(s)	244, 407, 479, 533, 835
CviQI	GTAC	1 cut(s)	381
DdeI	CTNAG	5 cut(s)	126, 548, 842, 897, 913
DpnI	GATC	2 cut(s)	140, 584
DpnII	GATC	2 cut(s)	138, 582
EaeI	YGGCCR	1 cut(s)	855
Eam1104I	CTCTTC	1 cut(s)	602
EarI	CTCTTC	1 cut(s)	602
Ecl136II	GAGCTC	1 cut(s)	125
Eco130I	CCWWGG	2 cut(s)	519, 858
Eco24I	GRGCYC	2 cut(s)	127, 284
Eco47I	GGWCC	2 cut(s)	947, 998
Eco53kI	GAGCTC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	785
Eco88I	CYCGRG	1 cut(s)	558
Eco91I	GGTNACC	1 cut(s)	563
EcoICRI	GAGCTC	1 cut(s)	125
EcoO65I	GGTNACC	1 cut(s)	563
EcoRII	CCWGG	1 cut(s)	72
EcoT14I	CCWWGG	2 cut(s)	519, 858
EcoT22I	ATGCAT	1 cut(s)	973
EcoT38I	GRGCYC	2 cut(s)	127, 284
ErhI	CCWWGG	2 cut(s)	519, 858
FaeI	CATG	5 cut(s)	247, 410, 482, 536, 838
FatI	CATG	5 cut(s)	243, 406, 478, 532, 834
FblI	GTMKAC	2 cut(s)	753, 823
Fnu4HI	GCNGC	2 cut(s)	78, 958
FokI	GGATG	1 cut(s)	691
FriOI	GRGCYC	2 cut(s)	127, 284
Fsp4HI	GCNGC	2 cut(s)	78, 958
FspBI	CTAG	3 cut(s)	81, 395, 641
GlaI	GCGC	2 cut(s)	573, 595
GluI	GCNGC	2 cut(s)	78, 958
HaeIII	GGCC	2 cut(s)	847, 857
HapII	CCGG	2 cut(s)	110, 945
HhaI	GCGC	2 cut(s)	574, 596
Hin1II	CATG	5 cut(s)	247, 410, 482, 536, 838
Hin6I	GCGC	2 cut(s)	572, 594
HinP1I	GCGC	2 cut(s)	572, 594
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HindIII	AAGCTT	1 cut(s)	31
HinfI	GANTC	3 cut(s)	13, 419, 755
HpaII	CCGG	2 cut(s)	110, 945
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	3 cut(s)	241, 754, 824
Hpy188I	TCNGA	7 cut(s)	64, 178, 307, 604, 679, 688, 843
Hpy188III	TCNNGA	5 cut(s)	209, 322, 718, 945, 996
Hpy8I	GTNNAC	3 cut(s)	241, 754, 824
Hpy99I	CGWCG	1 cut(s)	785
HpyAV	CCTTC	4 cut(s)	724, 725, 736, 872
HpyCH4III	ACNGT	2 cut(s)	437, 965
HpyCH4IV	ACGT	2 cut(s)	456, 953
HpyCH4V	TGCA	5 cut(s)	272, 812, 960, 971, 983
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpyF3I	CTNAG	5 cut(s)	126, 548, 842, 897, 913
HpySE526I	ACGT	2 cut(s)	456, 953
Hsp92II	CATG	5 cut(s)	247, 410, 482, 536, 838
HspAI	GCGC	2 cut(s)	572, 594
Kpn2I	TCCGGA	1 cut(s)	944
Kzo9I	GATC	2 cut(s)	138, 582
LmnI	GCTCC	4 cut(s)	122, 287, 465, 523
Lsp1109I	GCAGC	1 cut(s)	944
LweI	GCATC	3 cut(s)	711, 958, 997
MaeI	CTAG	3 cut(s)	81, 395, 641
MaeII	ACGT	2 cut(s)	456, 953
MaeIII	GTNAC	4 cut(s)	196, 214, 437, 563
MalI	GATC	2 cut(s)	140, 584
MboI	GATC	2 cut(s)	138, 582
MboII	GAAGA	4 cut(s)	347, 619, 778, 918
MhlI	GDGCHC	3 cut(s)	127, 284, 462
MlsI	TGGCCA	1 cut(s)	857
MluCI	AATT	7 cut(s)	91, 102, 133, 295, 301, 472, 698
MluNI	TGGCCA	1 cut(s)	857
MlyI	GAGTC	1 cut(s)	749
MmeI	TCCRAC	1 cut(s)	929
MnlI	CCTC	9 cut(s)	459, 473, 545, 780, 837, 906, 912, 922, 952
Mox20I	TGGCCA	1 cut(s)	857
Mph1103I	ATGCAT	1 cut(s)	973
MroI	TCCGGA	1 cut(s)	944
MroXI	GAANNNNTTC	1 cut(s)	362
MscI	TGGCCA	1 cut(s)	857
MslI	CAYNNNNRTG	2 cut(s)	374, 817
Msp20I	TGGCCA	1 cut(s)	857
MspI	CCGG	2 cut(s)	110, 945
MspR9I	CCNGG	2 cut(s)	74, 111
Mva1269I	GAATGC	2 cut(s)	344, 636
MvaI	CCWGG	1 cut(s)	74
MvnI	CGCG	2 cut(s)	594, 800
MwoI	GCNNNNNNNGC	1 cut(s)	488
NciI	CCSGG	1 cut(s)	111
NdeII	GATC	2 cut(s)	138, 582
NlaIII	CATG	5 cut(s)	247, 410, 482, 536, 838
NlaIV	GGNNCC	1 cut(s)	283
NmuCI	GTSAC	3 cut(s)	196, 214, 437
NsiI	ATGCAT	1 cut(s)	973
NspI	RCATGY	1 cut(s)	838
NspV	TTCGAA	1 cut(s)	88
PciI	ACATGT	1 cut(s)	834
PcsI	WCGNNNNNNNCGW	1 cut(s)	462
PctI	GAATGC	2 cut(s)	344, 636
PdmI	GAANNNNTTC	1 cut(s)	362
PfeI	GAWTC	2 cut(s)	13, 419
PflFI	GACNNNGTC	1 cut(s)	749
PkrI	GCNGC	2 cut(s)	79, 959
PleI	GAGTC	1 cut(s)	749
PpsI	GAGTC	1 cut(s)	749
PscI	ACATGT	1 cut(s)	834
Psp124BI	GAGCTC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	72
PspEI	GGTNACC	1 cut(s)	563
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	283
PspPI	GGNCC	2 cut(s)	947, 998
PstI	CTGCAG	1 cut(s)	985
PsyI	GACNNNGTC	1 cut(s)	749
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
RseI	CAYNNNNRTG	2 cut(s)	374, 817
SacI	GAGCTC	1 cut(s)	127
SalI	GTCGAC	1 cut(s)	752
SatI	GCNGC	2 cut(s)	78, 958
Sau3AI	GATC	2 cut(s)	138, 582
Sau96I	GGNCC	2 cut(s)	947, 998
SchI	GAGTC	1 cut(s)	749
ScrFI	CCNGG	2 cut(s)	74, 111
SduI	GDGCHC	3 cut(s)	127, 284, 462
SfaNI	GCATC	3 cut(s)	711, 958, 997
SfcI	CTRYAG	1 cut(s)	981
SfuI	TTCGAA	1 cut(s)	88
SinI	GGWCC	2 cut(s)	947, 998
SmiMI	CAYNNNNRTG	2 cut(s)	374, 817
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
Sse9I	AATT	7 cut(s)	91, 102, 133, 295, 301, 472, 698
SsiI	CCGC	3 cut(s)	77, 592, 798
SspMI	CTAG	3 cut(s)	81, 395, 641
SstI	GAGCTC	1 cut(s)	127
StyD4I	CCNGG	2 cut(s)	72, 109
StyI	CCWWGG	2 cut(s)	519, 858
TaaI	ACNGT	2 cut(s)	437, 965
TaiI	ACGT	2 cut(s)	459, 956
TaqI	TCGA	6 cut(s)	88, 141, 167, 465, 753, 851
TasI	AATT	7 cut(s)	91, 102, 133, 295, 301, 472, 698
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	2 cut(s)	13, 419
TscAI	CASTG	3 cut(s)	381, 440, 970
TseFI	GTSAC	3 cut(s)	196, 214, 437
TseI	GCWGC	1 cut(s)	957
Tsp45I	GTSAC	3 cut(s)	196, 214, 437
TspDTI	ATGAA	5 cut(s)	11, 25, 348, 423, 755
TspRI	CASTG	3 cut(s)	381, 440, 970
Tth111I	GACNNNGTC	1 cut(s)	749
VpaK11BI	GGWCC	2 cut(s)	947, 998
XapI	RAATTY	1 cut(s)	91
XceI	RCATGY	1 cut(s)	838
XmiI	GTMKAC	2 cut(s)	753, 823
XmnI	GAANNNNTTC	1 cut(s)	362
XspI	CTAG	3 cut(s)	81, 395, 641
Zsp2I	ATGCAT	1 cut(s)	973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.