Rh1BG304200
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0006944
Physical Location & Seq
Forward (+)
44030944 .. 44034502
3559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG304200.1

Sequence Viewer

Length: 444 bp
ATGAATGGGGGGATTCGCACAAGCGTGAAGGGATACCTTAATGCTCAACGAGCCAGTTTGGCAGTAGACCCAGTGCATGAAAATGTGACCATCAACAGAAATGTCACCACCGCCCAAGATCCAGTTGAGGAGGCGACAATGGATTCAACTAAATATGGGCTCATTATCTGTGACAGTAACATTCCTTGCTTCCCAGTTTTGAGCTCTACTGCAAAGAACTTGGCTTCACATGGAACTAGAAGCGCTGAGAGTCCGCCTCACCAAGATATATGTGGGGATATCAAAATTATAGACATGACTTTGAGGCCACCAATGACCAAGGTTGTCCAAATGCTTGAAGGCATCTGCTCTGTTCCTCAGCCTCCAACTTCCTCGATTATCTTCAAACCGATGAGCGAAGGGGGGACTTCCTTGGGTCCATCGGACTGCAACAGCGATGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

147

Amino Acids

15.6

Weight (kDa)

5.22

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 66
AciI CCGC 2 cut(s) 111, 254
AclWI GGATC 1 cut(s) 113
AfeI AGCGCT 1 cut(s) 244
AgsI TTSAA 3 cut(s) 147, 338, 385
AleI CACNNNNGTG 1 cut(s) 23
AluBI AGCT 1 cut(s) 204
AluI AGCT 1 cut(s) 204
Alw21I GWGCWC 1 cut(s) 206
AlwI GGATC 1 cut(s) 113
Aor51HI AGCGCT 1 cut(s) 244
AoxI GGCC 1 cut(s) 305
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 416
AsuHPI GGTGA 2 cut(s) 97, 251
AvaII GGWCC 1 cut(s) 416
BanII GRGCYC 2 cut(s) 162, 206
Bbv12I GWGCWC 1 cut(s) 206
BbvCI CCTCAGC 1 cut(s) 357
BccI CCATC 2 cut(s) 98, 427
BciVI GTATCC 1 cut(s) 26
BfaI CTAG 1 cut(s) 237
BfoI RGCGCY 1 cut(s) 246
BfuI GTATCC 1 cut(s) 26
BglI GCCNNNNNGGC 1 cut(s) 59
Bme18I GGWCC 1 cut(s) 416
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 1 cut(s) 417
BmrI ACTGGG 2 cut(s) 65, 188
BmsI GCATC 2 cut(s) 351, 427
BmuI ACTGGG 2 cut(s) 65, 188
BplI GAGNNNNNCTC 2 cut(s) 241, 273
Bpu10I CCTNAGC 1 cut(s) 357
BsaJI CCNNGG 2 cut(s) 318, 411
Bse1I ACTGG 4 cut(s) 54, 71, 122, 194
BseDI CCNNGG 2 cut(s) 318, 411
BseMII CTCAG 2 cut(s) 237, 371
BseNI ACTGG 4 cut(s) 54, 71, 122, 194
BseRI GAGGAG 1 cut(s) 143
BshFI GGCC 1 cut(s) 307
BsiHKAI GWGCWC 1 cut(s) 206
BslFI GGGAC 1 cut(s) 418
BsmFI GGGAC 1 cut(s) 418
BsnI GGCC 1 cut(s) 307
Bsp1286I GDGCHC 2 cut(s) 162, 206
Bsp143I GATC 1 cut(s) 118
BspACI CCGC 2 cut(s) 111, 254
BspANI GGCC 1 cut(s) 307
BspCNI CTCAG 2 cut(s) 238, 370
BspLI GGNNCC 1 cut(s) 417
BspPI GGATC 1 cut(s) 113
BsrI ACTGG 4 cut(s) 54, 71, 122, 194
BssECI CCNNGG 2 cut(s) 318, 411
BssMI GATC 1 cut(s) 118
BssT1I CCWWGG 2 cut(s) 318, 411
Bst4CI ACNGT 1 cut(s) 176
BstDEI CTNAG 2 cut(s) 246, 357
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 2 cut(s) 50, 59
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 1 cut(s) 307
BtsIMutI CAGTG 1 cut(s) 78
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 416
CviAII CATG 3 cut(s) 77, 230, 295
CviJI RGCY 6 cut(s) 53, 160, 204, 224, 307, 361
CviKI_1 RGCY 6 cut(s) 53, 160, 204, 224, 307, 361
DdeI CTNAG 2 cut(s) 246, 357
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
EciI GGCGGA 1 cut(s) 243
Ecl136II GAGCTC 1 cut(s) 204
Eco130I CCWWGG 2 cut(s) 318, 411
Eco24I GRGCYC 2 cut(s) 162, 206
Eco32I GATATC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 416
Eco47III AGCGCT 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 204
EcoICRI GAGCTC 1 cut(s) 204
EcoRV GATATC 1 cut(s) 280
EcoT14I CCWWGG 2 cut(s) 318, 411
EcoT38I GRGCYC 2 cut(s) 162, 206
ErhI CCWWGG 2 cut(s) 318, 411
FaeI CATG 3 cut(s) 80, 233, 298
FaiI YATR 7 cut(s) 78, 156, 231, 269, 271, 290, 296
FaqI GGGAC 1 cut(s) 418
FatI CATG 3 cut(s) 76, 229, 294
FblI GTMKAC 1 cut(s) 66
FriOI GRGCYC 2 cut(s) 162, 206
FspBI CTAG 1 cut(s) 237
GlaI GCGC 1 cut(s) 244
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 1 cut(s) 307
HhaI GCGC 1 cut(s) 245
Hin1II CATG 3 cut(s) 80, 233, 298
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HinfI GANTC 3 cut(s) 13, 143, 250
HphI GGTGA 2 cut(s) 97, 251
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 424
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 3 cut(s) 22, 332, 392
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4V TGCA 3 cut(s) 76, 212, 429
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 59
HpyF3I CTNAG 2 cut(s) 246, 357
Hsp92II CATG 3 cut(s) 80, 233, 298
HspAI GCGC 1 cut(s) 243
Kzo9I GATC 1 cut(s) 118
LpnPI CCDG 4 cut(s) 67, 84, 135, 207
LweI GCATC 2 cut(s) 351, 427
MaeI CTAG 1 cut(s) 237
MaeIII GTNAC 4 cut(s) 85, 103, 170, 176
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 1 cut(s) 373
MflI RGATCY 1 cut(s) 118
MhlI GDGCHC 2 cut(s) 162, 206
MluCI AATT 1 cut(s) 285
MlyI GAGTC 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 389
MnlI CCTC 7 cut(s) 121, 124, 267, 297, 366, 372, 382
MseI TTAA 1 cut(s) 39
MslI CAYNNNNRTG 2 cut(s) 23, 81
MwoI GCNNNNNNNGC 2 cut(s) 50, 59
NdeII GATC 1 cut(s) 118
NlaIII CATG 3 cut(s) 80, 233, 298
NlaIV GGNNCC 1 cut(s) 417
NmuCI GTSAC 3 cut(s) 85, 103, 170
OliI CACNNNNGTG 1 cut(s) 23
PfeI GAWTC 2 cut(s) 13, 143
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 206
PspN4I GGNNCC 1 cut(s) 417
PspPI GGNCC 1 cut(s) 416
PsuI RGATCY 1 cut(s) 118
RseI CAYNNNNRTG 2 cut(s) 23, 81
SacI GAGCTC 1 cut(s) 206
SaqAI TTAA 1 cut(s) 39
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 1 cut(s) 416
SchI GAGTC 1 cut(s) 259
SduI GDGCHC 2 cut(s) 162, 206
SetI ASST 3 cut(s) 39, 206, 324
SfaNI GCATC 2 cut(s) 351, 427
SinI GGWCC 1 cut(s) 416
SmiMI CAYNNNNRTG 2 cut(s) 23, 81
Sse9I AATT 1 cut(s) 285
SsiI CCGC 2 cut(s) 111, 254
SspMI CTAG 1 cut(s) 237
SstI GAGCTC 1 cut(s) 206
StyI CCWWGG 2 cut(s) 318, 411
TaaI ACNGT 1 cut(s) 176
TaqI TCGA 1 cut(s) 374
TasI AATT 1 cut(s) 285
TfiI GAWTC 2 cut(s) 13, 143
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TscAI CASTG 1 cut(s) 78
TseFI GTSAC 3 cut(s) 85, 103, 170
Tsp45I GTSAC 3 cut(s) 85, 103, 170
TspDTI ATGAA 2 cut(s) 17, 93
TspRI CASTG 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 416
XcmI CCANNNNNNNNNTGG 1 cut(s) 269
XmiI GTMKAC 1 cut(s) 66
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.