Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0006944

Physical Location & Seq

Genomic Coordinates Forward (+)

58456198 .. 58457396

Gene Structure 1199 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G030530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGCCAATCCGTTACAGTTACAAGGATCTTAAAACTGCGACTAACAACTTCTCAAATAAGCTTGGGCAAGGAGGTTTTGGCTCAGTTTACTTGGGGGTTCTCCCAGATGGAACTCGACTTGCTGTGAAGAAGTTGAAAGCCAATAAATATCAGGGAAAGAAAGATTTTCAACCTGAAGTTAGCATCAGTGGCAGTATCCATCATCTGCACTTGGTCAGGCTCCTGGGCTTCTGTGCAAAAGGAAGCAATCGACTTCTTGCCTACGAGTACATGGCAAATGGATCCCTTGACAAATGGATTTTCAGGAAAAAAAATGAAGAGTTCGTATTGGATTGGGAGACAAGATTCAACATAGCAGTGGGTATTGCCAAAGGAATAGCTTATCTCCATGAAGATTGTGATTTGAAGATTATTCACTGTGACATAAAGCCTCATAACGTGCTCCTTGACGACAATTACCATGCCAAAATCTCAGATTTTGGTCTGGCAAAGCTGATGACCAGGGAGCAAAGCCATATCTTCGACCCAACAGCAGCGCGAGGAACTATGGGATACATTGCCCCAGAGTGGTTCTATAAAAATTTAGGTGGTGTTTCGGAGAAAAGTGACGTGTACAGCTACGGAATGCTGCTGCTGGAGATCATTAGCGGAAGAAAGAACCTGGACGCATTACATCCCTGCTCTGATGAAATTTATTTTCCATTGTATGCCTCCGAGATGTTGAAAGAAGGGAAACTCAAGGACATCTTCGACCGCAAGATGAGGATAGATGACGTTGACGAGAGGGTTTCTACTGCGGTTATGGTAGCATTGTGGTGTATACAGTTAGACATGACTTTGAGGCCACCAATGACCAAGGTTGTCCAAATGCTTCAAGGCATCTGCTCTGTTCCTCAGCCTCCAATTCCGCATCTTTATCCAACTGAATTACCCAAGGGGGGGACTTCCTCCGGTCCATCGGACTGCAACAGCGATGCCTACCTTTCTGCAGAGAGCGCCTTTCCTGGCCAAGATAACATTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

341

Amino Acids

38.27

Weight (kDa)

7.12

Isoelectric Point (pI)

31.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	17 - 291	1.6e-43	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	18 - 289	4.2e-46	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006944)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30110
malus_domestica	MD15G1122900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0367661 RchiOBHm_Chr6g0297951
rosa_laevigata	RLG00000011549 RLG00000027270 RLG00000027276
rosa_multiflora	Rmu_co8343541.1_g000001 Rmu_sc0001091.1_g000014 Rmu_sc0008470.1_g000008 Rmu_sc0009775.1_g000007 Rmu_sc0027455.1_g000002
rosa_roxburghii	Rroxscaffold_4G00289420 Rroxscaffold_5G00333540 Rroxscaffold_5G00333550
rosa_rugosa	Rorug01G0336000 Rorug01G0336100 Rorug03G0303500 Rorug06G0277000
rosa_samantha	Rh1AG343100 Rh1BG304200 Rh1DG336500 Rh4BG005400 Rh6BG395800 Rh6BG396000
rosa_wichuraiana	Rw1G030530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	820
AccII	CGCG	1 cut(s)	538
AciI	CCGC	4 cut(s)	648, 754, 797, 908
AclWI	GGATC	3 cut(s)	33, 276, 289
AcoI	YGGCCR	1 cut(s)	1006
AcsI	RAATTY	2 cut(s)	580, 690
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	2 cut(s)	269, 614
AfiI	CCNNNNNNNGG	3 cut(s)	567, 938, 939
AflIII	ACRYGT	1 cut(s)	609
AgsI	TTSAA	6 cut(s)	136, 170, 349, 406, 724, 875
AjiI	CACGTC	1 cut(s)	610
AjnI	CCWGG	4 cut(s)	222, 500, 660, 1003
AluBI	AGCT	4 cut(s)	61, 380, 493, 618
AluI	AGCT	4 cut(s)	61, 380, 493, 618
Alw21I	GWGCWC	1 cut(s)	444
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	3 cut(s)	33, 276, 289
AoxI	GGCC	2 cut(s)	842, 1006
ApeKI	GCWGC	3 cut(s)	533, 628, 631
ApoI	RAATTY	2 cut(s)	580, 690
AspLEI	GCGC	2 cut(s)	538, 998
AspS9I	GGNCC	1 cut(s)	953
AvaII	GGWCC	1 cut(s)	953
BalI	TGGCCA	1 cut(s)	1008
BamHI	GGATCC	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	444
BbvCI	CCTCAGC	1 cut(s)	894
BbvI	GCAGC	3 cut(s)	545, 615, 618
BccI	CCATC	3 cut(s)	101, 207, 964
BciT130I	CCWGG	4 cut(s)	224, 502, 662, 1005
BciVI	GTATCC	2 cut(s)	206, 545
BcoDI	GTCTC	1 cut(s)	332
BfmI	CTRYAG	1 cut(s)	987
BfoI	RGCGCY	1 cut(s)	999
BfuI	GTATCC	2 cut(s)	206, 545
BisI	GCNGC	3 cut(s)	534, 629, 632
BlsI	GCNGC	3 cut(s)	535, 630, 633
Bme1390I	CCNGG	4 cut(s)	224, 502, 662, 1005
Bme18I	GGWCC	1 cut(s)	953
BmgBI	CACGTC	1 cut(s)	610
BmgT120I	GGNCC	1 cut(s)	953
BmiI	GGNNCC	2 cut(s)	221, 283
BmrFI	CCNGG	4 cut(s)	224, 502, 662, 1005
BmsI	GCATC	4 cut(s)	192, 888, 919, 964
BpmI	CTGGAG	1 cut(s)	656
Bpu10I	CCTNAGC	1 cut(s)	894
BpuEI	CTTGAG	1 cut(s)	722
BsaJI	CCNNGG	4 cut(s)	223, 501, 855, 933
BsaWI	WCCGGW	1 cut(s)	950
Bsc4I	CCNNNNNNNGG	3 cut(s)	567, 938, 939
Bse3DI	GCAATG	1 cut(s)	555
BseBI	CCWGG	4 cut(s)	224, 502, 662, 1005
BseDI	CCNNGG	4 cut(s)	223, 501, 855, 933
BseGI	GGATG	1 cut(s)	673
BseLI	CCNNNNNNNGG	3 cut(s)	567, 938, 939
BseMI	GCAATG	1 cut(s)	555
BseMII	CTCAG	3 cut(s)	96, 486, 908
BseXI	GCAGC	3 cut(s)	545, 615, 618
BsgI	GTGCAG	1 cut(s)	191
Bsh1236I	CGCG	1 cut(s)	538
Bsh1285I	CGRYCG	1 cut(s)	754
BshFI	GGCC	2 cut(s)	844, 1008
BsiEI	CGRYCG	1 cut(s)	754
BsiHKAI	GWGCWC	1 cut(s)	444
BsiSI	CCGG	1 cut(s)	951
BslFI	GGGAC	1 cut(s)	955
BslI	CCNNNNNNNGG	3 cut(s)	567, 938, 939
BsmAI	GTCTC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	955
BsmI	GAATGC	1 cut(s)	630
BsnI	GGCC	2 cut(s)	844, 1008
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp1407I	TGTACA	1 cut(s)	612
Bsp143I	GATC	3 cut(s)	25, 281, 639
BspACI	CCGC	4 cut(s)	648, 754, 797, 908
BspANI	GGCC	2 cut(s)	844, 1008
BspCNI	CTCAG	3 cut(s)	95, 485, 907
BspFNI	CGCG	1 cut(s)	538
BspLI	GGNNCC	2 cut(s)	221, 283
BspMAI	CTGCAG	1 cut(s)	991
BspPI	GGATC	3 cut(s)	33, 276, 289
BsrDI	GCAATG	1 cut(s)	555
BsrGI	TGTACA	1 cut(s)	612
BssECI	CCNNGG	4 cut(s)	223, 501, 855, 933
BssMI	GATC	3 cut(s)	25, 281, 639
BssNAI	GTATAC	1 cut(s)	821
BssT1I	CCWWGG	2 cut(s)	855, 933
Bst1107I	GTATAC	1 cut(s)	821
Bst2UI	CCWGG	4 cut(s)	224, 502, 662, 1005
Bst4CI	ACNGT	3 cut(s)	17, 419, 825
Bst6I	CTCTTC	1 cut(s)	312
BstAUI	TGTACA	1 cut(s)	612
BstDEI	CTNAG	3 cut(s)	82, 472, 894
BstF5I	GGATG	1 cut(s)	673
BstFNI	CGCG	1 cut(s)	538
BstH2I	RGCGCY	1 cut(s)	999
BstHHI	GCGC	2 cut(s)	538, 998
BstKTI	GATC	3 cut(s)	28, 284, 642
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	3 cut(s)	25, 281, 639
BstMCI	CGRYCG	1 cut(s)	754
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 995
BstNI	CCWGG	4 cut(s)	224, 502, 662, 1005
BstSCI	CCNGG	4 cut(s)	222, 500, 660, 1003
BstSFI	CTRYAG	1 cut(s)	987
BstUI	CGCG	1 cut(s)	538
BstV1I	GCAGC	3 cut(s)	545, 615, 618
BstX2I	RGATCY	2 cut(s)	25, 281
BstYI	RGATCY	2 cut(s)	25, 281
BstZ17I	GTATAC	1 cut(s)	821
BsuI	GTATCC	2 cut(s)	206, 545
BsuRI	GGCC	2 cut(s)	844, 1008
BtgZI	GCGATG	1 cut(s)	987
BtrI	CACGTC	1 cut(s)	610
BtsCI	GGATG	1 cut(s)	673
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	3 cut(s)	193, 363, 415
CfoI	GCGC	2 cut(s)	538, 998
Cfr13I	GGNCC	1 cut(s)	953
CseI	GACGC	1 cut(s)	674
Csp6I	GTAC	2 cut(s)	268, 613
CviAII	CATG	4 cut(s)	271, 389, 461, 832
CviQI	GTAC	2 cut(s)	268, 613
DdeI	CTNAG	3 cut(s)	82, 472, 894
DpnI	GATC	3 cut(s)	27, 283, 641
DpnII	GATC	3 cut(s)	25, 281, 639
EaeI	YGGCCR	1 cut(s)	1006
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
Eco130I	CCWWGG	2 cut(s)	855, 933
Eco47I	GGWCC	1 cut(s)	953
Eco57I	CTGAAG	1 cut(s)	195
EcoRII	CCWGG	4 cut(s)	222, 500, 660, 1003
EcoT14I	CCWWGG	2 cut(s)	855, 933
ErhI	CCWWGG	2 cut(s)	855, 933
FaeI	CATG	4 cut(s)	274, 392, 464, 835
FalI	AAGNNNNNCTT	2 cut(s)	731, 763
FaqI	GGGAC	1 cut(s)	955
FatI	CATG	4 cut(s)	270, 388, 460, 831
FblI	GTMKAC	1 cut(s)	820
Fnu4HI	GCNGC	3 cut(s)	534, 629, 632
FokI	GGATG	1 cut(s)	660
Fsp4HI	GCNGC	3 cut(s)	534, 629, 632
GlaI	GCGC	2 cut(s)	537, 997
GluI	GCNGC	3 cut(s)	534, 629, 632
GsuI	CTGGAG	1 cut(s)	656
HaeII	RGCGCY	1 cut(s)	999
HaeIII	GGCC	2 cut(s)	844, 1008
HapII	CCGG	1 cut(s)	951
HgaI	GACGC	1 cut(s)	674
HhaI	GCGC	2 cut(s)	538, 998
Hin1II	CATG	4 cut(s)	274, 392, 464, 835
Hin6I	GCGC	2 cut(s)	536, 996
HinP1I	GCGC	2 cut(s)	536, 996
HincII	GTYRAC	1 cut(s)	778
HindII	GTYRAC	1 cut(s)	778
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	1 cut(s)	345
HpaII	CCGG	1 cut(s)	951
Hpy166II	GTNNAC	4 cut(s)	88, 613, 778, 821
Hpy188I	TCNGA	5 cut(s)	475, 598, 685, 715, 961
Hpy188III	TCNNGA	1 cut(s)	304
Hpy8I	GTNNAC	4 cut(s)	88, 613, 778, 821
HpyAV	CCTTC	1 cut(s)	722
HpyCH4III	ACNGT	3 cut(s)	17, 419, 825
HpyCH4IV	ACGT	3 cut(s)	438, 609, 774
HpyCH4V	TGCA	4 cut(s)	208, 236, 966, 989
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 995
HpyF3I	CTNAG	3 cut(s)	82, 472, 894
HpySE526I	ACGT	3 cut(s)	438, 609, 774
Hsp92II	CATG	4 cut(s)	274, 392, 464, 835
HspAI	GCGC	2 cut(s)	536, 996
Kzo9I	GATC	3 cut(s)	25, 281, 639
LmnI	GCTCC	3 cut(s)	225, 447, 505
Lsp1109I	GCAGC	3 cut(s)	545, 615, 618
LweI	GCATC	4 cut(s)	192, 888, 919, 964
MaeII	ACGT	3 cut(s)	438, 609, 774
MaeIII	GTNAC	4 cut(s)	11, 17, 419, 605
MalI	GATC	3 cut(s)	27, 283, 641
MboI	GATC	3 cut(s)	25, 281, 639
MboII	GAAGA	7 cut(s)	139, 329, 404, 418, 511, 663, 739
MflI	RGATCY	2 cut(s)	25, 281
MhlI	GDGCHC	1 cut(s)	444
MlsI	TGGCCA	1 cut(s)	1008
MluCI	AATT	5 cut(s)	454, 580, 690, 903, 926
MluNI	TGGCCA	1 cut(s)	1008
MmeI	TCCRAC	1 cut(s)	944
Mox20I	TGGCCA	1 cut(s)	1008
MscI	TGGCCA	1 cut(s)	1008
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	2 cut(s)	356, 814
Msp20I	TGGCCA	1 cut(s)	1008
MspI	CCGG	1 cut(s)	951
MspR9I	CCNGG	4 cut(s)	224, 502, 662, 1005
Mva1269I	GAATGC	1 cut(s)	630
MvaI	CCWGG	4 cut(s)	224, 502, 662, 1005
MvnI	CGCG	1 cut(s)	538
MwoI	GCNNNNNNNGC	2 cut(s)	189, 995
NdeII	GATC	3 cut(s)	25, 281, 639
NlaIII	CATG	4 cut(s)	274, 392, 464, 835
NlaIV	GGNNCC	2 cut(s)	221, 283
NmuCI	GTSAC	2 cut(s)	419, 605
PctI	GAATGC	1 cut(s)	630
PfeI	GAWTC	1 cut(s)	345
PkrI	GCNGC	3 cut(s)	535, 630, 633
Psp6I	CCWGG	4 cut(s)	222, 500, 660, 1003
PspGI	CCWGG	4 cut(s)	222, 500, 660, 1003
PspN4I	GGNNCC	2 cut(s)	221, 283
PspPI	GGNCC	1 cut(s)	953
PstI	CTGCAG	1 cut(s)	991
PsuI	RGATCY	2 cut(s)	25, 281
RsaI	GTAC	2 cut(s)	269, 614
RsaNI	GTAC	2 cut(s)	268, 613
RseI	CAYNNNNRTG	2 cut(s)	356, 814
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	3 cut(s)	534, 629, 632
Sau3AI	GATC	3 cut(s)	25, 281, 639
Sau96I	GGNCC	1 cut(s)	953
ScrFI	CCNGG	4 cut(s)	224, 502, 662, 1005
SduI	GDGCHC	1 cut(s)	444
SfaNI	GCATC	4 cut(s)	192, 888, 919, 964
SfcI	CTRYAG	1 cut(s)	987
SinI	GGWCC	1 cut(s)	953
SmiMI	CAYNNNNRTG	2 cut(s)	356, 814
SmlI	CTYRAG	1 cut(s)	737
SmoI	CTYRAG	1 cut(s)	737
Sse9I	AATT	5 cut(s)	454, 580, 690, 903, 926
SsiI	CCGC	4 cut(s)	648, 754, 797, 908
StyD4I	CCNGG	4 cut(s)	222, 500, 660, 1003
StyI	CCWWGG	2 cut(s)	855, 933
TaaI	ACNGT	3 cut(s)	17, 419, 825
TaiI	ACGT	3 cut(s)	441, 612, 777
TaqI	TCGA	4 cut(s)	115, 250, 522, 750
TasI	AATT	5 cut(s)	454, 580, 690, 903, 926
TatI	WGTACW	2 cut(s)	267, 612
TfiI	GAWTC	1 cut(s)	345
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	3 cut(s)	193, 363, 422
TseFI	GTSAC	2 cut(s)	419, 605
TseI	GCWGC	3 cut(s)	533, 628, 631
Tsp45I	GTSAC	2 cut(s)	419, 605
TspDTI	ATGAA	3 cut(s)	330, 405, 702
TspGWI	ACGGA	1 cut(s)	636
TspRI	CASTG	3 cut(s)	193, 363, 422
VpaK11BI	GGWCC	1 cut(s)	953
XapI	RAATTY	2 cut(s)	580, 690
XmiI	GTMKAC	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.