Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006944

Physical Location & Seq

Genomic Coordinates Reverse (-)

10460705 .. 10461190

Gene Structure 486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011549

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTTTTCACAACACTTCGAGGAACTCGGGGTTACCTTGCACCGGAGCCGTGCTATATCGGAGAAGAGTGATGTGTATAGCTATGGAATGCTGTTGCTAGAGATTATCGGTGGGAGAAAGAACTATGACCAATCTCAATTTCCATCATATGCCTTGAAGATGCTAAAAGAAGGCAAAATGAAGGACATTGTTGACTCCAAGCTGAAGATAGATGACGCCGACGAGAGGGTTTCTACCGCGATTATTGTTGCATTGTGGTGTATACAGCAAGACATGTGTTTGAGGCCATCAATGGCCGAGATTGTCCAAATCTTTGAAGGCGTCTGTCCAGTTCATCCGCCTCCAACTTCATTCCTCAGCAATGATTTCTTCAACAATGACTTCCTCAGGACCAACGTGCTGCTACAGTGGTGCCAATTTTTCTGCAGAGCGTCTTTCTGGACCAAGATAAACATTTGCTGTCAACATGAGAAGAGAATTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

162

Amino Acids

18.68

Weight (kDa)

6.41

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	15 - 103	4.7e-06	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	16 - 104	5e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0006944)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30110
malus_domestica	MD15G1122900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0367661 RchiOBHm_Chr6g0297951
rosa_laevigata	RLG00000011549 RLG00000027270 RLG00000027276
rosa_multiflora	Rmu_co8343541.1_g000001 Rmu_sc0001091.1_g000014 Rmu_sc0008470.1_g000008 Rmu_sc0009775.1_g000007 Rmu_sc0027455.1_g000002
rosa_roxburghii	Rroxscaffold_4G00289420 Rroxscaffold_5G00333540 Rroxscaffold_5G00333550
rosa_rugosa	Rorug01G0336000 Rorug01G0336100 Rorug03G0303500 Rorug06G0277000
rosa_samantha	Rh1AG343100 Rh1BG304200 Rh1DG336500 Rh4BG005400 Rh6BG395800 Rh6BG396000
rosa_wichuraiana	Rw1G030530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	411
AccI	GTMKAC	1 cut(s)	262
AccII	CGCG	1 cut(s)	239
AciI	CCGC	2 cut(s)	237, 338
AcoI	YGGCCR	1 cut(s)	294
AcsI	RAATTY	1 cut(s)	477
AcuI	CTGAAG	1 cut(s)	224
AcyI	GRCGYC	2 cut(s)	216, 321
AfiI	CCNNNNNNNGG	2 cut(s)	42, 225
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	3 cut(s)	157, 317, 373
AjuI	GAANNNNNNNTTGG	2 cut(s)	123, 155
AluBI	AGCT	2 cut(s)	81, 202
AluI	AGCT	2 cut(s)	81, 202
Ama87I	CYCGRG	1 cut(s)	26
AoxI	GGCC	2 cut(s)	284, 294
ApeKI	GCWGC	1 cut(s)	400
ApoI	RAATTY	1 cut(s)	477
AspS9I	GGNCC	2 cut(s)	390, 441
AvaI	CYCGRG	1 cut(s)	26
AvaII	GGWCC	2 cut(s)	390, 441
AxyI	CCTNAGG	1 cut(s)	386
BanI	GGYRCC	1 cut(s)	411
BbvCI	CCTCAGC	1 cut(s)	356
BbvI	GCAGC	1 cut(s)	387
BccI	CCATC	2 cut(s)	151, 295
BceAI	ACGGC	1 cut(s)	33
BfaI	CTAG	1 cut(s)	98
BfmI	CTRYAG	2 cut(s)	404, 424
BisI	GCNGC	1 cut(s)	401
BlsI	GCNGC	1 cut(s)	402
Bme18I	GGWCC	2 cut(s)	390, 441
BmeT110I	CYCGRG	1 cut(s)	26
BmgT120I	GGNCC	2 cut(s)	390, 441
BmiI	GGNNCC	2 cut(s)	47, 413
BmsI	GCATC	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	356
BsaHI	GRCGYC	2 cut(s)	216, 321
BsaWI	WCCGGW	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 225
Bse1I	ACTGG	1 cut(s)	329
Bse21I	CCTNAGG	1 cut(s)	386
Bse3DI	GCAATG	1 cut(s)	367
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	2 cut(s)	42, 225
BseMI	GCAATG	1 cut(s)	367
BseMII	CTCAG	2 cut(s)	370, 400
BseNI	ACTGG	1 cut(s)	329
BseXI	GCAGC	1 cut(s)	387
Bsh1236I	CGCG	1 cut(s)	239
BshFI	GGCC	2 cut(s)	286, 296
BshNI	GGYRCC	1 cut(s)	411
BsiHKCI	CYCGRG	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	43
BslI	CCNNNNNNNGG	2 cut(s)	42, 225
BsmI	GAATGC	1 cut(s)	93
BsnI	GGCC	2 cut(s)	286, 296
BsoBI	CYCGRG	1 cut(s)	26
BspACI	CCGC	2 cut(s)	237, 338
BspANI	GGCC	2 cut(s)	286, 296
BspCNI	CTCAG	2 cut(s)	369, 399
BspFNI	CGCG	1 cut(s)	239
BspLI	GGNNCC	2 cut(s)	47, 413
BspMAI	CTGCAG	1 cut(s)	428
BspT107I	GGYRCC	1 cut(s)	411
BsrDI	GCAATG	1 cut(s)	367
BsrI	ACTGG	1 cut(s)	329
BssNAI	GTATAC	1 cut(s)	263
BssNI	GRCGYC	2 cut(s)	216, 321
Bst1107I	GTATAC	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	408
Bst6I	CTCTTC	2 cut(s)	59, 467
BstACI	GRCGYC	2 cut(s)	216, 321
BstDEI	CTNAG	2 cut(s)	356, 386
BstEII	GGTNACC	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	334
BstFNI	CGCG	1 cut(s)	239
BstNSI	RCATGY	1 cut(s)	277
BstPI	GGTNACC	1 cut(s)	31
BstSFI	CTRYAG	2 cut(s)	404, 424
BstUI	CGCG	1 cut(s)	239
BstV1I	GCAGC	1 cut(s)	387
BstZ17I	GTATAC	1 cut(s)	263
Bsu36I	CCTNAGG	1 cut(s)	386
BsuRI	GGCC	2 cut(s)	286, 296
BtsCI	GGATG	1 cut(s)	334
BtsIMutI	CAGTG	1 cut(s)	413
Cfr13I	GGNCC	2 cut(s)	390, 441
CseI	GACGC	3 cut(s)	224, 310, 420
CviAII	CATG	2 cut(s)	274, 467
CviJI	RGCY	5 cut(s)	48, 81, 202, 286, 296
CviKI_1	RGCY	5 cut(s)	48, 81, 202, 286, 296
DdeI	CTNAG	2 cut(s)	356, 386
EaeI	YGGCCR	1 cut(s)	294
Eam1104I	CTCTTC	2 cut(s)	59, 467
EarI	CTCTTC	2 cut(s)	59, 467
EciI	GGCGGA	1 cut(s)	327
Eco47I	GGWCC	2 cut(s)	390, 441
Eco57I	CTGAAG	1 cut(s)	224
Eco81I	CCTNAGG	1 cut(s)	386
Eco88I	CYCGRG	1 cut(s)	26
Eco91I	GGTNACC	1 cut(s)	31
EcoO65I	GGTNACC	1 cut(s)	31
FaeI	CATG	2 cut(s)	277, 470
FaiI	YATR	9 cut(s)	56, 78, 84, 126, 148, 150, 263, 275, 468
FatI	CATG	2 cut(s)	273, 466
FauNDI	CATATG	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	401
FokI	GGATG	1 cut(s)	321
Fsp4HI	GCNGC	1 cut(s)	401
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	1 cut(s)	401
HaeIII	GGCC	2 cut(s)	286, 296
HapII	CCGG	1 cut(s)	43
HgaI	GACGC	3 cut(s)	224, 310, 420
Hin1I	GRCGYC	2 cut(s)	216, 321
Hin1II	CATG	2 cut(s)	277, 470
HincII	GTYRAC	2 cut(s)	193, 464
HindII	GTYRAC	2 cut(s)	193, 464
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	1 cut(s)	43
Hpy166II	GTNNAC	3 cut(s)	193, 263, 464
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	3 cut(s)	388, 439, 483
Hpy8I	GTNNAC	3 cut(s)	193, 263, 464
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	3 cut(s)	164, 175, 311
HpyCH4III	ACNGT	1 cut(s)	408
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	3 cut(s)	40, 251, 426
HpyF3I	CTNAG	2 cut(s)	356, 386
HpySE526I	ACGT	1 cut(s)	396
Hsp92I	GRCGYC	2 cut(s)	216, 321
Hsp92II	CATG	2 cut(s)	277, 470
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	4 cut(s)	56, 342, 373, 424
Lsp1109I	GCAGC	1 cut(s)	387
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	1 cut(s)	31
MboII	GAAGA	5 cut(s)	76, 169, 217, 361, 484
MluCI	AATT	3 cut(s)	137, 416, 477
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	368
MnlI	CCTC	6 cut(s)	13, 219, 276, 351, 365, 395
MslI	CAYNNNNRTG	1 cut(s)	256
MspI	CCGG	1 cut(s)	43
Mva1269I	GAATGC	1 cut(s)	93
MvnI	CGCG	1 cut(s)	239
NdeI	CATATG	1 cut(s)	148
NlaIII	CATG	2 cut(s)	277, 470
NlaIV	GGNNCC	2 cut(s)	47, 413
NmeAIII	GCCGAG	1 cut(s)	322
NspI	RCATGY	1 cut(s)	277
PciI	ACATGT	1 cut(s)	273
PctI	GAATGC	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	402
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PscI	ACATGT	1 cut(s)	273
PspEI	GGTNACC	1 cut(s)	31
PspN4I	GGNNCC	2 cut(s)	47, 413
PspPI	GGNCC	2 cut(s)	390, 441
PstI	CTGCAG	1 cut(s)	428
RseI	CAYNNNNRTG	1 cut(s)	256
SatI	GCNGC	1 cut(s)	401
Sau96I	GGNCC	2 cut(s)	390, 441
SchI	GAGTC	1 cut(s)	188
SetI	ASST	4 cut(s)	38, 83, 204, 399
SfaNI	GCATC	1 cut(s)	150
SfcI	CTRYAG	2 cut(s)	404, 424
SinI	GGWCC	2 cut(s)	390, 441
SmiMI	CAYNNNNRTG	1 cut(s)	256
Sse9I	AATT	3 cut(s)	137, 416, 477
SsiI	CCGC	2 cut(s)	237, 338
SspMI	CTAG	1 cut(s)	98
TaaI	ACNGT	1 cut(s)	408
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	1 cut(s)	18
TasI	AATT	3 cut(s)	137, 416, 477
TscAI	CASTG	1 cut(s)	413
TseI	GCWGC	1 cut(s)	400
TspDTI	ATGAA	3 cut(s)	194, 323, 339
TspRI	CASTG	1 cut(s)	413
VpaK11BI	GGWCC	2 cut(s)	390, 441
XapI	RAATTY	1 cut(s)	477
XceI	RCATGY	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	262
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.