Rroxscaffold_5G00333550

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
984292 .. 984728
437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00333550.1

Sequence Viewer

Length: 360 bp
ATGCCAAGCCAGATGTTCGTATTCGATGCCAACAATGCTTCAAAACTTTTATTCAAGGACATATTCTCATGCATAATGCATCTGATCATTGGTGGAAGAAAGAACTACGACCCATCAGAAACATCTGAAAAATCACATTTTCCATCGTATGCCTTCAAGATGTTGGAAGAAGGGAAACTCAAGGACATCTTCGACTCCAAGGTGAGGATAGACGACGTTGGCGAGAGGGTCTCTACAGCCGTTATGGTAGCATTGTGGTGCATACAGGAAGACATGAATTTGAGGCCAGCAGTGAGTAAGGTTGTCCAAATGCTTGAAGGCATCTGCTCTGTTCCTCAGCCTCCAACTTCCTCAAGATAA

Protein Analysis

119

Amino Acids

13.42

Weight (kDa)

6.09

Isoelectric Point (pI)

56.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 277
AfiI CCNNNNNNNGG 1 cut(s) 204
AgsI TTSAA 4 cut(s) 42, 55, 157, 317
Alw26I GTCTC 1 cut(s) 235
AoxI GGCC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 277
AsuHPI GGTGA 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 276
BbvCI CCTCAGC 1 cut(s) 336
BccI CCATC 2 cut(s) 121, 151
BceAI ACGGC 1 cut(s) 224
BclI TGATCA 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 235
BfmI CTRYAG 1 cut(s) 234
BmsI GCATC 3 cut(s) 16, 88, 330
BpiI GAAGAC 1 cut(s) 276
BplI GAGNNNNNCTC 2 cut(s) 215, 247
Bpu10I CCTNAGC 1 cut(s) 336
BpuEI CTTGAG 2 cut(s) 164, 337
BsaI GGTCTC 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 350
BshFI GGCC 1 cut(s) 286
BslI CCNNNNNNNGG 1 cut(s) 204
BsmAI GTCTC 1 cut(s) 235
BsnI GGCC 1 cut(s) 286
Bso31I GGTCTC 1 cut(s) 235
Bsp143I GATC 1 cut(s) 84
BspANI GGCC 1 cut(s) 286
BspCNI CTCAG 1 cut(s) 349
BspTNI GGTCTC 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 1 cut(s) 336
BstKTI GATC 1 cut(s) 87
BstMAI GTCTC 1 cut(s) 235
BstMBI GATC 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstSFI CTRYAG 1 cut(s) 234
BstV2I GAAGAC 1 cut(s) 276
BsuRI GGCC 1 cut(s) 286
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 1 cut(s) 288
CviAII CATG 2 cut(s) 69, 274
CviJI RGCY 4 cut(s) 9, 239, 286, 340
CviKI_1 RGCY 4 cut(s) 9, 239, 286, 340
DdeI CTNAG 1 cut(s) 336
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 198
EcoT22I ATGCAT 2 cut(s) 74, 81
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 2 cut(s) 72, 277
FaiI YATR 7 cut(s) 62, 70, 74, 150, 245, 263, 275
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FatI CATG 2 cut(s) 68, 273
FbaI TGATCA 1 cut(s) 84
HaeIII GGCC 1 cut(s) 286
Hin1II CATG 2 cut(s) 72, 277
HinfI GANTC 1 cut(s) 194
HphI GGTGA 1 cut(s) 214
Hpy188I TCNGA 3 cut(s) 84, 118, 127
Hpy188III TCNNGA 2 cut(s) 157, 354
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 3 cut(s) 163, 164, 311
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 3 cut(s) 72, 79, 261
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 336
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 2 cut(s) 72, 277
Ksp22I TGATCA 1 cut(s) 84
Kzo9I GATC 1 cut(s) 84
LpnPI CCDG 3 cut(s) 23, 251, 300
LweI GCATC 3 cut(s) 16, 88, 330
MaeII ACGT 1 cut(s) 216
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 4 cut(s) 108, 179, 181, 281
MluCI AATT 1 cut(s) 277
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 5 cut(s) 198, 219, 276, 345, 351
Mph1103I ATGCAT 2 cut(s) 74, 81
MslI CAYNNNNRTG 1 cut(s) 256
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 1 cut(s) 84
NlaIII CATG 2 cut(s) 72, 277
NsiI ATGCAT 2 cut(s) 74, 81
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
RseI CAYNNNNRTG 1 cut(s) 256
Sau3AI GATC 1 cut(s) 84
SchI GAGTC 1 cut(s) 188
SetI ASST 3 cut(s) 204, 219, 303
SfaNI GCATC 3 cut(s) 16, 88, 330
SfcI CTRYAG 1 cut(s) 234
SmiMI CAYNNNNRTG 1 cut(s) 256
SmlI CTYRAG 2 cut(s) 179, 352
SmoI CTYRAG 2 cut(s) 179, 352
Sse9I AATT 1 cut(s) 277
StyI CCWWGG 1 cut(s) 198
TaiI ACGT 1 cut(s) 219
TaqI TCGA 2 cut(s) 24, 192
TasI AATT 1 cut(s) 277
TscAI CASTG 1 cut(s) 297
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 1 cut(s) 297
XapI RAATTY 1 cut(s) 277
Zsp2I ATGCAT 2 cut(s) 74, 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.