Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006944

Physical Location & Seq

Genomic Coordinates Forward (+)

57979294 .. 57980867

Gene Structure 1574 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59208

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGACCTGCAGAACTTGGCTTCACATGGAACTCGAAGCGCTGAGAGTCCGCCTCACCAAGGATACCGACACTACCAGAGGAAGAGAAATGCACCACAATCTCCTGAAGATACTTCAGAAGATAATAATTTCCTGGAAAAGCTAATTGGGATGCCAATCCGTTACAGTTACAAGGATCTTAAAACTGCAACTAAGAACTTCTCAAATAAGATTGGGCAAGGAGGTTTTGGCTCAGTTTACTTAGGGGTTCTCCCAGATGGAACTCGACTTGCTGTGAAGAAGACGGAAGCCAATATTGATTGGAAAAAGGAGTTTCAAGCTGAAGTTACCATCAGTGGCAGTATCCATCATCTGCACTTGGCCAGGCTCCGGGGCTTCTGTGCAAAGGGAAGCAATCGACTTCTTGCCTATGAGTACATGGCAAATGGATCCCTGGACAAATGGATTTTCAGGAAAAAAAATGAAGAGTTCGTATTGGATTCGGAGACAAGATTCACCATAGCAGTGGGTATTGCCAAAGGACTAGCTTATCTCCATGAAGATTGTGATTTGAACATTATTCACTGTGACATAAAGCCTCATAATGTGCTCCTTGACGACAATTACCATGCCAAAGTCTCAGATTTTGGTTTGGCAGTGCTGATGGCCAGGGAGCAGAGCAGTCTATGGAATATAATACTGCTGCTGGAGATCATTAGCGGAAGAAAGAACTTGGACCTAGATGATGAACGTTATCTTCCATCGTATGCCTCCAAAATGTTTGAAGAAGGGAAACTCCAGGACATCTTCGACCCCAAGATGAGGATAGATGACGTTGACGAGAGGGTTTCTACTGCGGTTATGGTAGCATTGTGGTGTATACAGTTAGACGTGACTTTGAGGCCACCAATGACCAAGGTTGTCCAAATGCTTCAAGGCATCTGCTCTGTTCCTCAGCCTCCAATTCCGCGGCTTTATCCAAATGAATTACCGAAGAGGGGGACTTCCTCGCGTCCATCGGAGTATCGGACTGCAACAGCGATGCCACTACTACAAATTTCCCCAAACCCCACTGATTTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

354

Amino Acids

40.12

Weight (kDa)

7.14

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	67 - 218	4e-27	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	68 - 220	1.2e-29	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006944)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30110
malus_domestica	MD15G1122900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0367661 RchiOBHm_Chr6g0297951
rosa_laevigata	RLG00000011549 RLG00000027270 RLG00000027276
rosa_multiflora	Rmu_co8343541.1_g000001 Rmu_sc0001091.1_g000014 Rmu_sc0008470.1_g000008 Rmu_sc0009775.1_g000007 Rmu_sc0027455.1_g000002
rosa_roxburghii	Rroxscaffold_4G00289420 Rroxscaffold_5G00333540 Rroxscaffold_5G00333550
rosa_rugosa	Rorug01G0336000 Rorug01G0336100 Rorug03G0303500 Rorug06G0277000
rosa_samantha	Rh1AG343100 Rh1BG304200 Rh1DG336500 Rh4BG005400 Rh6BG395800 Rh6BG396000
rosa_wichuraiana	Rw1G030530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	859
AccII	CGCG	2 cut(s)	949, 991
AciI	CCGC	5 cut(s)	50, 699, 836, 947, 949
AclI	AACGTT	1 cut(s)	730
AclWI	GGATC	3 cut(s)	183, 423, 436
AcoI	YGGCCR	2 cut(s)	360, 645
AcsI	RAATTY	1 cut(s)	1035
AcuI	CTGAAG	3 cut(s)	99, 126, 342
AfaI	GTAC	1 cut(s)	416
AfeI	AGCGCT	1 cut(s)	40
AfiI	CCNNNNNNNGG	4 cut(s)	59, 369, 801, 977
AgsI	TTSAA	5 cut(s)	317, 553, 764, 914, 1060
AjiI	CACGTC	1 cut(s)	871
AjnI	CCWGG	5 cut(s)	132, 362, 432, 647, 777
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AluBI	AGCT	3 cut(s)	142, 320, 527
AluI	AGCT	3 cut(s)	142, 320, 527
Alw21I	GWGCWC	1 cut(s)	591
Alw26I	GTCTC	2 cut(s)	479, 622
AlwI	GGATC	3 cut(s)	183, 423, 436
Aor51HI	AGCGCT	1 cut(s)	40
AoxI	GGCC	3 cut(s)	360, 645, 881
ApeKI	GCWGC	1 cut(s)	682
ApoI	RAATTY	1 cut(s)	1035
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	4, 715
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	2 cut(s)	47, 487
AvaII	GGWCC	2 cut(s)	4, 715
BalI	TGGCCA	2 cut(s)	362, 647
BamHI	GGATCC	1 cut(s)	428
BbsI	GAAGAC	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	591
BbvCI	CCTCAGC	1 cut(s)	933
BbvI	GCAGC	1 cut(s)	669
BccI	CCATC	6 cut(s)	251, 338, 354, 637, 748, 1003
BciT130I	CCWGG	5 cut(s)	134, 364, 434, 649, 779
BciVI	GTATCC	2 cut(s)	56, 353
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	2 cut(s)	479, 622
BfaI	CTAG	2 cut(s)	524, 719
BfmI	CTRYAG	1 cut(s)	8
BfoI	RGCGCY	1 cut(s)	42
BfuAI	ACCTGC	1 cut(s)	15
BfuI	GTATCC	2 cut(s)	56, 353
BisI	GCNGC	2 cut(s)	683, 950
BlsI	GCNGC	2 cut(s)	684, 951
Bme1390I	CCNGG	6 cut(s)	134, 364, 371, 434, 649, 779
Bme18I	GGWCC	2 cut(s)	4, 715
BmgBI	CACGTC	1 cut(s)	871
BmgT120I	GGNCC	2 cut(s)	4, 715
BmiI	GGNNCC	2 cut(s)	368, 430
BmrFI	CCNGG	6 cut(s)	134, 364, 371, 434, 649, 779
BmsI	GCATC	3 cut(s)	141, 927, 1011
BpiI	GAAGAC	1 cut(s)	287
BplI	GAGNNNNNCTC	2 cut(s)	37, 69
BpmI	CTGGAG	2 cut(s)	707, 761
Bpu10I	CCTNAGC	1 cut(s)	933
BpuMI	CCSGG	1 cut(s)	371
BsaBI	GATNNNNATC	1 cut(s)	155
BsaJI	CCNNGG	6 cut(s)	58, 370, 432, 648, 894, 947
Bsc4I	CCNNNNNNNGG	4 cut(s)	59, 369, 801, 977
Bse8I	GATNNNNATC	1 cut(s)	155
BseBI	CCWGG	5 cut(s)	134, 364, 434, 649, 779
BseDI	CCNNGG	6 cut(s)	58, 370, 432, 648, 894, 947
BseGI	GGATG	1 cut(s)	156
BseJI	GATNNNNATC	1 cut(s)	155
BseLI	CCNNNNNNNGG	4 cut(s)	59, 369, 801, 977
BseMII	CTCAG	4 cut(s)	33, 246, 633, 947
BseXI	GCAGC	1 cut(s)	669
BsgI	GTGCAG	1 cut(s)	338
Bsh1236I	CGCG	2 cut(s)	949, 991
BshFI	GGCC	3 cut(s)	362, 647, 883
BsiHKAI	GWGCWC	1 cut(s)	591
BsiSI	CCGG	1 cut(s)	370
BslFI	GGGAC	1 cut(s)	994
BslI	CCNNNNNNNGG	4 cut(s)	59, 369, 801, 977
BsmAI	GTCTC	2 cut(s)	479, 622
BsmFI	GGGAC	1 cut(s)	994
BsnI	GGCC	3 cut(s)	362, 647, 883
Bsp1286I	GDGCHC	1 cut(s)	591
Bsp143I	GATC	3 cut(s)	175, 428, 690
BspACI	CCGC	5 cut(s)	50, 699, 836, 947, 949
BspANI	GGCC	3 cut(s)	362, 647, 883
BspCNI	CTCAG	4 cut(s)	34, 245, 632, 946
BspFNI	CGCG	2 cut(s)	949, 991
BspLI	GGNNCC	2 cut(s)	368, 430
BspMAI	CTGCAG	1 cut(s)	12
BspMI	ACCTGC	1 cut(s)	15
BspPI	GGATC	3 cut(s)	183, 423, 436
BssECI	CCNNGG	6 cut(s)	58, 370, 432, 648, 894, 947
BssMI	GATC	3 cut(s)	175, 428, 690
BssNAI	GTATAC	1 cut(s)	860
BssT1I	CCWWGG	2 cut(s)	58, 894
Bst1107I	GTATAC	1 cut(s)	860
Bst2UI	CCWGG	5 cut(s)	134, 364, 434, 649, 779
Bst4CI	ACNGT	3 cut(s)	167, 566, 864
Bst6I	CTCTTC	3 cut(s)	77, 459, 968
BstDEI	CTNAG	6 cut(s)	42, 192, 232, 241, 619, 933
BstDSI	CCRYGG	1 cut(s)	947
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	156
BstFNI	CGCG	2 cut(s)	949, 991
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	3 cut(s)	178, 431, 693
BstMAI	GTCTC	2 cut(s)	479, 622
BstMBI	GATC	3 cut(s)	175, 428, 690
BstNI	CCWGG	5 cut(s)	134, 364, 434, 649, 779
BstSCI	CCNGG	6 cut(s)	132, 362, 369, 432, 647, 777
BstSFI	CTRYAG	1 cut(s)	8
BstUI	CGCG	2 cut(s)	949, 991
BstV1I	GCAGC	1 cut(s)	669
BstV2I	GAAGAC	1 cut(s)	287
BstX2I	RGATCY	2 cut(s)	175, 428
BstXI	CCANNNNNNTGG	1 cut(s)	505
BstYI	RGATCY	2 cut(s)	175, 428
BstZ17I	GTATAC	1 cut(s)	860
BsuI	GTATCC	2 cut(s)	56, 353
BsuRI	GGCC	3 cut(s)	362, 647, 883
BtgI	CCRYGG	1 cut(s)	947
BtgZI	GCGATG	1 cut(s)	1034
BtrI	CACGTC	1 cut(s)	871
BtsCI	GGATG	1 cut(s)	156
BtsI	GCAGTG	2 cut(s)	510, 642
BtsIMutI	CAGTG	5 cut(s)	340, 510, 562, 642, 1050
BveI	ACCTGC	1 cut(s)	15
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	4, 715
Cfr42I	CCGCGG	1 cut(s)	950
CseI	GACGC	1 cut(s)	980
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	4 cut(s)	26, 418, 536, 608
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	6 cut(s)	42, 192, 232, 241, 619, 933
DpnI	GATC	3 cut(s)	177, 430, 692
DpnII	GATC	3 cut(s)	175, 428, 690
EaeI	YGGCCR	2 cut(s)	360, 645
Eam1104I	CTCTTC	3 cut(s)	77, 459, 968
EarI	CTCTTC	3 cut(s)	77, 459, 968
EciI	GGCGGA	1 cut(s)	39
Eco130I	CCWWGG	2 cut(s)	58, 894
Eco47I	GGWCC	2 cut(s)	4, 715
Eco47III	AGCGCT	1 cut(s)	40
Eco57I	CTGAAG	3 cut(s)	99, 126, 342
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoRII	CCWGG	5 cut(s)	132, 362, 432, 647, 777
EcoT14I	CCWWGG	2 cut(s)	58, 894
ErhI	CCWWGG	2 cut(s)	58, 894
FaeI	CATG	4 cut(s)	29, 421, 539, 611
FaqI	GGGAC	1 cut(s)	994
FatI	CATG	4 cut(s)	25, 417, 535, 607
FblI	GTMKAC	1 cut(s)	859
Fnu4HI	GCNGC	2 cut(s)	683, 950
FokI	GGATG	1 cut(s)	163
Fsp4HI	GCNGC	2 cut(s)	683, 950
FspBI	CTAG	2 cut(s)	524, 719
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	2 cut(s)	683, 950
GsuI	CTGGAG	2 cut(s)	707, 761
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	3 cut(s)	362, 647, 883
HapII	CCGG	1 cut(s)	370
HgaI	GACGC	1 cut(s)	980
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	4 cut(s)	29, 421, 539, 611
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	817
HindII	GTYRAC	1 cut(s)	817
HinfI	GANTC	3 cut(s)	46, 479, 492
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	2 cut(s)	47, 487
Hpy166II	GTNNAC	3 cut(s)	238, 817, 860
Hpy188I	TCNGA	5 cut(s)	118, 484, 622, 1000, 1008
Hpy188III	TCNNGA	2 cut(s)	104, 451
Hpy8I	GTNNAC	3 cut(s)	238, 817, 860
HpyAV	CCTTC	1 cut(s)	761
HpyCH4III	ACNGT	3 cut(s)	167, 566, 864
HpyCH4IV	ACGT	3 cut(s)	730, 813, 870
HpyCH4V	TGCA	6 cut(s)	10, 92, 188, 355, 383, 1013
HpyF3I	CTNAG	6 cut(s)	42, 192, 232, 241, 619, 933
HpySE526I	ACGT	3 cut(s)	730, 813, 870
Hsp92II	CATG	4 cut(s)	29, 421, 539, 611
HspAI	GCGC	1 cut(s)	39
KspI	CCGCGG	1 cut(s)	950
Kzo9I	GATC	3 cut(s)	175, 428, 690
LmnI	GCTCC	3 cut(s)	372, 594, 652
Lsp1109I	GCAGC	1 cut(s)	669
LweI	GCATC	3 cut(s)	141, 927, 1011
MaeI	CTAG	2 cut(s)	524, 719
MaeII	ACGT	3 cut(s)	730, 813, 870
MaeIII	GTNAC	5 cut(s)	161, 167, 325, 566, 871
MalI	GATC	3 cut(s)	177, 430, 692
MboI	GATC	3 cut(s)	175, 428, 690
MflI	RGATCY	2 cut(s)	175, 428
MhlI	GDGCHC	1 cut(s)	591
MlsI	TGGCCA	2 cut(s)	362, 647
MluCI	AATT	7 cut(s)	127, 144, 601, 942, 965, 1035, 1060
MluNI	TGGCCA	2 cut(s)	362, 647
MlyI	GAGTC	1 cut(s)	55
Mox20I	TGGCCA	2 cut(s)	362, 647
MscI	TGGCCA	2 cut(s)	362, 647
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	2 cut(s)	503, 853
Msp20I	TGGCCA	2 cut(s)	362, 647
MspA1I	CMGCKG	1 cut(s)	949
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	6 cut(s)	134, 364, 371, 434, 649, 779
MvaI	CCWGG	5 cut(s)	134, 364, 434, 649, 779
MvnI	CGCG	2 cut(s)	949, 991
NciI	CCSGG	1 cut(s)	371
NdeII	GATC	3 cut(s)	175, 428, 690
NlaIII	CATG	4 cut(s)	29, 421, 539, 611
NlaIV	GGNNCC	2 cut(s)	368, 430
NmuCI	GTSAC	2 cut(s)	566, 871
PfeI	GAWTC	2 cut(s)	479, 492
PfoI	TCCNGGA	2 cut(s)	132, 777
PkrI	GCNGC	2 cut(s)	684, 951
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
Psp1406I	AACGTT	1 cut(s)	730
Psp6I	CCWGG	5 cut(s)	132, 362, 432, 647, 777
PspGI	CCWGG	5 cut(s)	132, 362, 432, 647, 777
PspN4I	GGNNCC	2 cut(s)	368, 430
PspPI	GGNCC	2 cut(s)	4, 715
PstI	CTGCAG	1 cut(s)	12
PsuI	RGATCY	2 cut(s)	175, 428
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
RseI	CAYNNNNRTG	2 cut(s)	503, 853
SacII	CCGCGG	1 cut(s)	950
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	2 cut(s)	683, 950
Sau3AI	GATC	3 cut(s)	175, 428, 690
Sau96I	GGNCC	2 cut(s)	4, 715
SchI	GAGTC	1 cut(s)	55
ScrFI	CCNGG	6 cut(s)	134, 364, 371, 434, 649, 779
SduI	GDGCHC	1 cut(s)	591
SfaNI	GCATC	3 cut(s)	141, 927, 1011
SfcI	CTRYAG	1 cut(s)	8
Sfr303I	CCGCGG	1 cut(s)	950
SgrBI	CCGCGG	1 cut(s)	950
SinI	GGWCC	2 cut(s)	4, 715
SmiMI	CAYNNNNRTG	2 cut(s)	503, 853
Sse9I	AATT	7 cut(s)	127, 144, 601, 942, 965, 1035, 1060
SsiI	CCGC	5 cut(s)	50, 699, 836, 947, 949
SspI	AATATT	1 cut(s)	295
SspMI	CTAG	2 cut(s)	524, 719
StyD4I	CCNGG	6 cut(s)	132, 362, 369, 432, 647, 777
StyI	CCWWGG	2 cut(s)	58, 894
TaaI	ACNGT	3 cut(s)	167, 566, 864
TaiI	ACGT	3 cut(s)	733, 816, 873
TaqI	TCGA	4 cut(s)	34, 265, 397, 789
TasI	AATT	7 cut(s)	127, 144, 601, 942, 965, 1035, 1060
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	1 cut(s)	952
TfiI	GAWTC	2 cut(s)	479, 492
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	5 cut(s)	340, 510, 569, 642, 1057
TseFI	GTSAC	2 cut(s)	566, 871
TseI	GCWGC	1 cut(s)	682
Tsp45I	GTSAC	2 cut(s)	566, 871
TspDTI	ATGAA	4 cut(s)	477, 552, 741, 978
TspGWI	ACGGA	2 cut(s)	149, 299
TspRI	CASTG	5 cut(s)	340, 510, 569, 642, 1057
VpaK11BI	GGWCC	2 cut(s)	4, 715
XagI	CCTNNNNNAGG	1 cut(s)	57
XapI	RAATTY	1 cut(s)	1035
XmiI	GTMKAC	1 cut(s)	859
XspI	CTAG	2 cut(s)	524, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.