Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006944

Physical Location & Seq

Genomic Coordinates Reverse (-)

42449122 .. 42452427

Gene Structure 3306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0277000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGAGGCGTCAGAAGAGAAGAAGAAGAAGACGAAGACGAAGACGAAGACGAAGGCCCTGTTCGAAGTCCCACACCCGTTGGAGCAAGCCGACATCCTAATCAATATCCTCTCGAGAGTGCCCACGAAAAAGATCTTCCAATTCAGGTGTGTTTCTCCATTTTGGCATAGGGTTTTGACCCATCCACGGTTCGCCACTTGTTTGAAGTCGAATCGCTTTATTTTGATGCACAATGCCAGTGCCATAGACCCTAATGCTGATAGATGGTCAGGTTTGCTTTGCATTGAGACTGACTCTTACAATCCCACTTCGCCTTCAGATATTGTGTTTAGACTGCCCTTCGATTTGCCCACCCGTGCAGCAGAAATCAGTGGCTCCTGCAATGGACTCCTTTGCCTGTTCGGAAGGTTTACTGATAAGCTCTTTTATGTGTTCAATCCCCTAACAGGAGAGTATGTATGTCTGCCACAACCCCCTAAAAGGCTTCCCAATGTATTTTTCTATGGCTTTGGGTGTGCTTCAGCCTCAAAGGTGTATAAGATAGTGATCGCTATACCTCAACCGAATGAGGAATTGGAAGTTTTGGTCCATACAATTGGGACTGATGAGTGGAGAAATGTAGCTACTGCATCAATGCTGCTCCCTACCCTTGAGGAAGGAGATGGCTGCTTTGGAACATGTGAGAATGGGACTATCTACTGGTTAGGAAGTAATGGTGTATTGTGGGGTTTCGATGTTGAGGGAGAGACCGATAGAGTCTTGGGACTTCCTACCCTATCTGATATTATAAAAGAAGGAGATGTGGACTGTGTTGTGAATCTTGGACTACTTAAGCAGTCTCTTTGTCTAATTGTTGGCATTAGGGGTTCTGATTCTAGAGTTAATGTCTTTTTGAAGAAGAATTATGTGGTGAATGAGATAAATCAGTTCCTCTGGAAACACAAGTTTGTTATGCATGCTGCTGAGATTGATAATGCTACAGTACCATTATTGGTTAGTAAGAAAAGGCAGATGTTGATGTTTCATGAAGGTCGTTTAGCTGCTTTTACTCATGGGAGGAAAGGACTTACAAAAATTGTTCTTGGCAACATGAAGACTTCAGCCAATGCAGCATTCGTGCATTATCCGAGTTTTGCCTCCCTTGCTGATGATATCTACGGATTAAATCCCTCAGTTGTCAAAATTACTAAAAAGCTGGAGTACCCAGCTCGATCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

406

Amino Acids

45.44

Weight (kDa)

8.75

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	31 - 64	8.8e-06	F-box domain
Beta-prop_KIB1-4	PF03478	110 - 253	6.5e-06	KIB1-4 beta-propeller
FBA_3	PF08268	113 - 250	7.3e-12	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006944)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30110
malus_domestica	MD15G1122900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0367661 RchiOBHm_Chr6g0297951
rosa_laevigata	RLG00000011549 RLG00000027270 RLG00000027276
rosa_multiflora	Rmu_co8343541.1_g000001 Rmu_sc0001091.1_g000014 Rmu_sc0008470.1_g000008 Rmu_sc0009775.1_g000007 Rmu_sc0027455.1_g000002
rosa_roxburghii	Rroxscaffold_4G00289420 Rroxscaffold_5G00333540 Rroxscaffold_5G00333550
rosa_rugosa	Rorug01G0336000 Rorug01G0336100 Rorug03G0303500 Rorug06G0277000
rosa_samantha	Rh1AG343100 Rh1BG304200 Rh1DG336500 Rh4BG005400 Rh6BG395800 Rh6BG396000
rosa_wichuraiana	Rw1G030530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	788
AcuI	CTGAAG	3 cut(s)	300, 504, 1083
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	2 cut(s)	984, 1202
AfiI	CCNNNNNNNGG	3 cut(s)	186, 446, 480
AflII	CTTAAG	1 cut(s)	830
AflIII	ACRYGT	1 cut(s)	677
AgsI	TTSAA	3 cut(s)	205, 436, 895
AjuI	GAANNNNNNNTTGG	6 cut(s)	482, 514, 557, 589, 1097, 1129
AluBI	AGCT	5 cut(s)	421, 623, 1040, 1195, 1208
AluI	AGCT	5 cut(s)	421, 623, 1040, 1195, 1208
Alw26I	GTCTC	3 cut(s)	281, 740, 843
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	6 cut(s)	359, 637, 666, 959, 1040, 1109
AspS9I	GGNCC	2 cut(s)	55, 586
AsuHPI	GGTGA	1 cut(s)	922
AsuII	TTCGAA	1 cut(s)	63
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	586
BaeGI	GKGCMC	1 cut(s)	123
BbsI	GAAGAC	5 cut(s)	35, 41, 47, 53, 1100
BbvI	GCAGC	6 cut(s)	371, 624, 653, 946, 1027, 1121
BccI	CCATC	3 cut(s)	189, 258, 656
BcoDI	GTCTC	3 cut(s)	281, 740, 843
BfaI	CTAG	1 cut(s)	876
BfmI	CTRYAG	1 cut(s)	978
BfrI	CTTAAG	1 cut(s)	830
BglII	AGATCT	1 cut(s)	132
BisI	GCNGC	6 cut(s)	360, 638, 667, 960, 1041, 1110
BlsI	GCNGC	6 cut(s)	361, 639, 668, 961, 1042, 1111
Bme18I	GGWCC	1 cut(s)	586
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	55, 586
BmiI	GGNNCC	1 cut(s)	376
BmsI	GCATC	2 cut(s)	216, 638
BpiI	GAAGAC	5 cut(s)	35, 41, 47, 53, 1100
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
BpmI	CTGGAG	1 cut(s)	1217
Bpu14I	TTCGAA	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	671
BsaBI	GATNNNNATC	1 cut(s)	545
BsaHI	GRCGYC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	740
BsaJI	CCNNGG	1 cut(s)	185
BsaXI	ACNNNNNCTCC	2 cut(s)	441, 471
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 446, 480
Bse1I	ACTGG	2 cut(s)	237, 704
Bse3DI	GCAATG	1 cut(s)	388
Bse8I	GATNNNNATC	1 cut(s)	545
BseDI	CCNNGG	1 cut(s)	185
BseGI	GGATG	2 cut(s)	93, 181
BseJI	GATNNNNATC	1 cut(s)	545
BseLI	CCNNNNNNNGG	3 cut(s)	186, 446, 480
BseMI	GCAATG	1 cut(s)	388
BseMII	CTCAG	2 cut(s)	954, 1185
BseNI	ACTGG	2 cut(s)	237, 704
BseSI	GKGCMC	1 cut(s)	123
BseXI	GCAGC	6 cut(s)	371, 624, 653, 946, 1027, 1121
BseYI	CCCAGC	1 cut(s)	1204
BsgI	GTGCAG	1 cut(s)	378
BshFI	GGCC	1 cut(s)	56
BsiHKCI	CYCGRG	1 cut(s)	112
BslFI	GGGAC	4 cut(s)	53, 613, 703, 777
BslI	CCNNNNNNNGG	3 cut(s)	186, 446, 480
BsmAI	GTCTC	3 cut(s)	281, 740, 843
BsmFI	GGGAC	4 cut(s)	53, 613, 703, 777
BsmI	GAATGC	1 cut(s)	1112
BsnI	GGCC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	740
BsoBI	CYCGRG	1 cut(s)	112
Bsp119I	TTCGAA	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	3 cut(s)	132, 546, 1211
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	2 cut(s)	955, 1184
BspHI	TCATGA	1 cut(s)	1024
BspLI	GGNNCC	1 cut(s)	376
BspT104I	TTCGAA	1 cut(s)	63
BspTI	CTTAAG	1 cut(s)	830
BspTNI	GGTCTC	1 cut(s)	740
BsrDI	GCAATG	1 cut(s)	388
BsrI	ACTGG	2 cut(s)	237, 704
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	3 cut(s)	132, 546, 1211
BssNI	GRCGYC	1 cut(s)	8
Bst4CI	ACNGT	3 cut(s)	189, 809, 982
Bst6I	CTCTTC	1 cut(s)	9
BstACI	GRCGYC	1 cut(s)	8
BstAFI	CTTAAG	1 cut(s)	830
BstBI	TTCGAA	1 cut(s)	63
BstC8I	GCNNGC	2 cut(s)	87, 957
BstDEI	CTNAG	2 cut(s)	963, 1171
BstDSI	CCRYGG	1 cut(s)	185
BstF5I	GGATG	2 cut(s)	93, 181
BstKTI	GATC	3 cut(s)	135, 549, 1214
BstMAI	GTCTC	3 cut(s)	281, 740, 843
BstMBI	GATC	3 cut(s)	132, 546, 1211
BstMWI	GCNNNNNNNGC	2 cut(s)	1109, 1142
BstNSI	RCATGY	2 cut(s)	681, 959
BstSFI	CTRYAG	1 cut(s)	978
BstSLI	GKGCMC	1 cut(s)	123
BstV1I	GCAGC	6 cut(s)	371, 624, 653, 946, 1027, 1121
BstV2I	GAAGAC	5 cut(s)	35, 41, 47, 53, 1100
BstX2I	RGATCY	1 cut(s)	132
BstXI	CCANNNNNNTGG	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	56
BtgI	CCRYGG	1 cut(s)	185
BtsCI	GGATG	2 cut(s)	93, 181
BtsIMutI	CAGTG	2 cut(s)	244, 376
Cac8I	GCNNGC	2 cut(s)	87, 957
CciI	TCATGA	1 cut(s)	1024
Cfr13I	GGNCC	2 cut(s)	55, 586
Csp6I	GTAC	2 cut(s)	983, 1201
CspCI	CAANNNNNGTGG	2 cut(s)	60, 95
CviAII	CATG	5 cut(s)	678, 956, 1025, 1052, 1090
CviQI	GTAC	2 cut(s)	983, 1201
DdeI	CTNAG	2 cut(s)	963, 1171
DpnI	GATC	3 cut(s)	134, 548, 1213
DpnII	GATC	3 cut(s)	132, 546, 1211
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	740
Eco32I	GATATC	1 cut(s)	1153
Eco47I	GGWCC	1 cut(s)	586
Eco57I	CTGAAG	3 cut(s)	300, 504, 1083
Eco88I	CYCGRG	1 cut(s)	112
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRV	GATATC	1 cut(s)	1153
EcoT22I	ATGCAT	1 cut(s)	957
FaeI	CATG	5 cut(s)	681, 959, 1028, 1055, 1093
FaqI	GGGAC	4 cut(s)	53, 613, 703, 777
FatI	CATG	5 cut(s)	677, 955, 1024, 1051, 1089
Fnu4HI	GCNGC	6 cut(s)	360, 638, 667, 960, 1041, 1110
FokI	GGATG	2 cut(s)	80, 168
Fsp4HI	GCNGC	6 cut(s)	360, 638, 667, 960, 1041, 1110
FspBI	CTAG	1 cut(s)	876
GluI	GCNGC	6 cut(s)	360, 638, 667, 960, 1041, 1110
GsaI	CCCAGC	1 cut(s)	1208
GsuI	CTGGAG	1 cut(s)	1217
HaeIII	GGCC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	5 cut(s)	681, 959, 1028, 1055, 1093
HinfI	GANTC	6 cut(s)	211, 293, 387, 756, 817, 872
HphI	GGTGA	1 cut(s)	922
Hpy166II	GTNNAC	2 cut(s)	411, 805
Hpy188I	TCNGA	6 cut(s)	13, 319, 404, 781, 871, 1128
Hpy188III	TCNNGA	5 cut(s)	112, 114, 876, 934, 1025
Hpy8I	GTNNAC	2 cut(s)	411, 805
HpyAV	CCTTC	7 cut(s)	46, 324, 349, 399, 650, 788, 1022
HpyCH4III	ACNGT	3 cut(s)	189, 809, 982
HpyCH4V	TGCA	8 cut(s)	229, 282, 359, 381, 629, 955, 1109, 1120
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1109, 1142
HpyF3I	CTNAG	2 cut(s)	963, 1171
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	5 cut(s)	681, 959, 1028, 1055, 1093
Kzo9I	GATC	3 cut(s)	132, 546, 1211
LmnI	GCTCC	3 cut(s)	82, 380, 645
Lsp1109I	GCAGC	6 cut(s)	371, 624, 653, 946, 1027, 1121
LweI	GCATC	2 cut(s)	216, 638
MaeI	CTAG	1 cut(s)	876
MalI	GATC	3 cut(s)	134, 548, 1213
MboI	GATC	3 cut(s)	132, 546, 1211
MfeI	CAATTG	1 cut(s)	594
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	7 cut(s)	140, 572, 594, 849, 901, 1074, 1182
MlyI	GAGTC	3 cut(s)	287, 381, 765
MmeI	TCCRAC	1 cut(s)	60
Mph1103I	ATGCAT	1 cut(s)	957
MseI	TTAA	3 cut(s)	831, 882, 1163
MspCI	CTTAAG	1 cut(s)	830
MunI	CAATTG	1 cut(s)	594
Mva1269I	GAATGC	1 cut(s)	1112
MwoI	GCNNNNNNNGC	2 cut(s)	1109, 1142
NdeII	GATC	3 cut(s)	132, 546, 1211
NlaIII	CATG	5 cut(s)	681, 959, 1028, 1055, 1093
NlaIV	GGNNCC	1 cut(s)	376
NsiI	ATGCAT	1 cut(s)	957
NspI	RCATGY	2 cut(s)	681, 959
NspV	TTCGAA	1 cut(s)	63
PaeI	GCATGC	1 cut(s)	959
PaeR7I	CTCGAG	1 cut(s)	112
PagI	TCATGA	1 cut(s)	1024
PciI	ACATGT	1 cut(s)	677
PctI	GAATGC	1 cut(s)	1112
PfeI	GAWTC	3 cut(s)	211, 817, 872
PkrI	GCNGC	6 cut(s)	361, 639, 668, 961, 1042, 1111
PleI	GAGTC	3 cut(s)	287, 381, 764
PpsI	GAGTC	3 cut(s)	287, 381, 764
PscI	ACATGT	1 cut(s)	677
PsiI	TTATAA	1 cut(s)	788
PspFI	CCCAGC	1 cut(s)	1204
PspN4I	GGNNCC	1 cut(s)	376
PspPI	GGNCC	2 cut(s)	55, 586
PsuI	RGATCY	1 cut(s)	132
RsaI	GTAC	2 cut(s)	984, 1202
RsaNI	GTAC	2 cut(s)	983, 1201
SaqAI	TTAA	3 cut(s)	831, 882, 1163
SatI	GCNGC	6 cut(s)	360, 638, 667, 960, 1041, 1110
Sau3AI	GATC	3 cut(s)	132, 546, 1211
Sau96I	GGNCC	2 cut(s)	55, 586
SchI	GAGTC	3 cut(s)	287, 381, 765
SduI	GDGCHC	1 cut(s)	123
SfaNI	GCATC	2 cut(s)	216, 638
SfcI	CTRYAG	1 cut(s)	978
Sfr274I	CTCGAG	1 cut(s)	112
SfuI	TTCGAA	1 cut(s)	63
SinI	GGWCC	1 cut(s)	586
SlaI	CTCGAG	1 cut(s)	112
SmlI	CTYRAG	3 cut(s)	112, 650, 830
SmoI	CTYRAG	3 cut(s)	112, 650, 830
SphI	GCATGC	1 cut(s)	959
Sse9I	AATT	7 cut(s)	140, 572, 594, 849, 901, 1074, 1182
SspMI	CTAG	1 cut(s)	876
TaaI	ACNGT	3 cut(s)	189, 809, 982
TaqI	TCGA	6 cut(s)	63, 113, 209, 342, 732, 1210
TaqII	GACCGA	1 cut(s)	764
TasI	AATT	7 cut(s)	140, 572, 594, 849, 901, 1074, 1182
TfiI	GAWTC	3 cut(s)	211, 817, 872
Tru1I	TTAA	3 cut(s)	831, 882, 1163
Tru9I	TTAA	3 cut(s)	831, 882, 1163
TscAI	CASTG	2 cut(s)	244, 376
TseI	GCWGC	6 cut(s)	359, 637, 666, 959, 1040, 1109
TspDTI	ATGAA	3 cut(s)	1013, 1041, 1106
TspGWI	ACGGA	1 cut(s)	1173
TspRI	CASTG	2 cut(s)	244, 376
Vha464I	CTTAAG	1 cut(s)	830
VpaK11BI	GGWCC	1 cut(s)	586
XbaI	TCTAGA	1 cut(s)	875
XceI	RCATGY	2 cut(s)	681, 959
XhoI	CTCGAG	1 cut(s)	112
XspI	CTAG	1 cut(s)	876
Zsp2I	ATGCAT	1 cut(s)	957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.