Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006944

Physical Location & Seq

Genomic Coordinates Reverse (-)

980035 .. 981441

Gene Structure 1407 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00333540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAATACATGGGAAATGGTTCCCTGGATAAATGGATTTTCAAGAAAACAAATGAAGAATGCTTTTTGGATTGGGAGAAAAAGGTTCAACATAGCAGTGGGTACTGCCAAAGGACTAGCTTATCTGCATGAAGATTGTGATTCAAAGATTATTCACTGTGACATAAAGCCTCAAAACGTGCTCCTCGACAACAATTACCATGCCAAAGTCGCAGATTTCGGTTTGGCAAAGCTAATGACCAAGGAGCAGAGCCATGTTTTAACAACACTTAGAGGAACTCGGGGTTACCTTGCGCCAGAGTGGATCACAAACCGCGCTATATCGGAGAAGAGTGATGTGTATAGCTATGGAATGCTGTTGCTAGAGATCATCGGTGGGAGAAAGAACTATGACCAATCAGAAAGTTCTGAAAAATCTCAATTTCCATCCTATGCCTTCAAGATGCTAGAAGAAGGCAAAATGAAGGACATTGTCGACTCCAAGCTGAACATAGATGATGCCGACGAGAGGGTTTCTACCGCGATTATTGTTGCATTGTGGTGTATACAGCAAGACATGTCTCTGAGGCCGTCGATGGCCAAGGTTGTCCAAATCTTTGAAGGGGTCTGTCCTGTTCCTCAGCCTCCAACTTCCTCAGCAATGATTTCTTCAACCATGGCTTCCTCCGGACCAACGTGCTGCAGCAGTGATGCATATTTGTCTGCAGAGCATCTGTCTGGACCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

242

Amino Acids

27.04

Weight (kDa)

6.95

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	27 - 197	1.5e-24	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	30 - 197	3.4e-34	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006944)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30110
malus_domestica	MD15G1122900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0367661 RchiOBHm_Chr6g0297951
rosa_laevigata	RLG00000011549 RLG00000027270 RLG00000027276
rosa_multiflora	Rmu_co8343541.1_g000001 Rmu_sc0001091.1_g000014 Rmu_sc0008470.1_g000008 Rmu_sc0009775.1_g000007 Rmu_sc0027455.1_g000002
rosa_roxburghii	Rroxscaffold_4G00289420 Rroxscaffold_5G00333540 Rroxscaffold_5G00333550
rosa_rugosa	Rorug01G0336000 Rorug01G0336100 Rorug03G0303500 Rorug06G0277000
rosa_samantha	Rh1AG343100 Rh1BG304200 Rh1DG336500 Rh4BG005400 Rh6BG395800 Rh6BG396000
rosa_wichuraiana	Rw1G030530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	474, 544
AccII	CGCG	2 cut(s)	315, 521
AccIII	TCCGGA	1 cut(s)	665
AciI	CCGC	2 cut(s)	313, 519
AclWI	GGATC	1 cut(s)	311
AcoI	YGGCCR	1 cut(s)	576
AfaI	GTAC	1 cut(s)	103
AfiI	CCNNNNNNNGG	1 cut(s)	507
AflIII	ACRYGT	1 cut(s)	555
AgsI	TTSAA	6 cut(s)	42, 88, 144, 439, 599, 651
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	4 cut(s)	119, 232, 345, 484
AluI	AGCT	4 cut(s)	119, 232, 345, 484
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	1 cut(s)	564
AlwI	GGATC	1 cut(s)	311
Ama87I	CYCGRG	1 cut(s)	279
Aor13HI	TCCGGA	1 cut(s)	665
AoxI	GGCC	2 cut(s)	566, 576
ApeKI	GCWGC	2 cut(s)	678, 681
Asp700I	GAANNNNTTC	1 cut(s)	18
AspLEI	GCGC	2 cut(s)	295, 317
AspS9I	GGNCC	2 cut(s)	668, 719
AvaI	CYCGRG	1 cut(s)	279
AvaII	GGWCC	2 cut(s)	668, 719
BalI	TGGCCA	1 cut(s)	578
Bbv12I	GWGCWC	1 cut(s)	183
BbvCI	CCTCAGC	2 cut(s)	618, 634
BbvI	GCAGC	2 cut(s)	665, 693
BccI	CCATC	2 cut(s)	433, 568
BceAI	ACGGC	1 cut(s)	553
BciT130I	CCWGG	1 cut(s)	25
BcoDI	GTCTC	1 cut(s)	564
BfaI	CTAG	3 cut(s)	116, 362, 446
BfmI	CTRYAG	2 cut(s)	679, 702
BisI	GCNGC	2 cut(s)	679, 682
BlsI	GCNGC	2 cut(s)	680, 683
Bme1390I	CCNGG	1 cut(s)	25
Bme18I	GGWCC	2 cut(s)	668, 719
BmeT110I	CYCGRG	1 cut(s)	279
BmgT120I	GGNCC	2 cut(s)	668, 719
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	25
BmsI	GCATC	4 cut(s)	432, 487, 679, 718
Bpu10I	CCTNAGC	2 cut(s)	618, 634
BsaJI	CCNNGG	4 cut(s)	23, 240, 579, 654
BsaWI	WCCGGW	1 cut(s)	665
Bsc4I	CCNNNNNNNGG	1 cut(s)	507
Bse3DI	GCAATG	1 cut(s)	645
BseAI	TCCGGA	1 cut(s)	665
BseBI	CCWGG	1 cut(s)	25
BseDI	CCNNGG	4 cut(s)	23, 240, 579, 654
BseGI	GGATG	1 cut(s)	425
BseLI	CCNNNNNNNGG	1 cut(s)	507
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	3 cut(s)	554, 632, 648
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	2 cut(s)	665, 693
Bsh1236I	CGCG	2 cut(s)	315, 521
BshFI	GGCC	2 cut(s)	568, 578
BsiHKAI	GWGCWC	1 cut(s)	183
BsiHKCI	CYCGRG	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	666
BslI	CCNNNNNNNGG	1 cut(s)	507
BsmAI	GTCTC	1 cut(s)	564
BsmI	GAATGC	2 cut(s)	64, 357
BsnI	GGCC	2 cut(s)	568, 578
BsoBI	CYCGRG	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp13I	TCCGGA	1 cut(s)	665
Bsp143I	GATC	2 cut(s)	303, 366
Bsp19I	CCATGG	1 cut(s)	654
BspACI	CCGC	2 cut(s)	313, 519
BspANI	GGCC	2 cut(s)	568, 578
BspCNI	CTCAG	3 cut(s)	555, 631, 647
BspEI	TCCGGA	1 cut(s)	665
BspFNI	CGCG	2 cut(s)	315, 521
BspLI	GGNNCC	1 cut(s)	21
BspMAI	CTGCAG	2 cut(s)	683, 706
BspPI	GGATC	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	645
BssECI	CCNNGG	4 cut(s)	23, 240, 579, 654
BssMI	GATC	2 cut(s)	303, 366
BssNAI	GTATAC	1 cut(s)	545
BssT1I	CCWWGG	3 cut(s)	240, 579, 654
Bst1107I	GTATAC	1 cut(s)	545
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	323
BstDEI	CTNAG	4 cut(s)	269, 563, 618, 634
BstDSI	CCRYGG	1 cut(s)	654
BstEII	GGTNACC	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	425
BstFNI	CGCG	2 cut(s)	315, 521
BstHHI	GCGC	2 cut(s)	295, 317
BstKTI	GATC	2 cut(s)	306, 369
BstMAI	GTCTC	1 cut(s)	564
BstMBI	GATC	2 cut(s)	303, 366
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	1 cut(s)	25
BstNSI	RCATGY	1 cut(s)	559
BstPI	GGTNACC	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	23
BstSFI	CTRYAG	2 cut(s)	679, 702
BstUI	CGCG	2 cut(s)	315, 521
BstV1I	GCAGC	2 cut(s)	665, 693
BstZ17I	GTATAC	1 cut(s)	545
BsuRI	GGCC	2 cut(s)	568, 578
BtgI	CCRYGG	1 cut(s)	654
BtsCI	GGATG	1 cut(s)	425
BtsI	GCAGTG	2 cut(s)	102, 691
BtsIMutI	CAGTG	3 cut(s)	102, 154, 691
CfoI	GCGC	2 cut(s)	295, 317
Cfr13I	GGNCC	2 cut(s)	668, 719
Csp6I	GTAC	1 cut(s)	102
CviAII	CATG	6 cut(s)	9, 128, 200, 254, 556, 655
CviQI	GTAC	1 cut(s)	102
DdeI	CTNAG	4 cut(s)	269, 563, 618, 634
DpnI	GATC	2 cut(s)	305, 368
DpnII	GATC	2 cut(s)	303, 366
EaeI	YGGCCR	1 cut(s)	576
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
Eco130I	CCWWGG	3 cut(s)	240, 579, 654
Eco47I	GGWCC	2 cut(s)	668, 719
Eco88I	CYCGRG	1 cut(s)	279
Eco91I	GGTNACC	1 cut(s)	284
EcoO65I	GGTNACC	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	23
EcoT14I	CCWWGG	3 cut(s)	240, 579, 654
EcoT22I	ATGCAT	1 cut(s)	694
ErhI	CCWWGG	3 cut(s)	240, 579, 654
FaeI	CATG	6 cut(s)	12, 131, 203, 257, 559, 658
FatI	CATG	6 cut(s)	8, 127, 199, 253, 555, 654
FblI	GTMKAC	2 cut(s)	474, 544
Fnu4HI	GCNGC	2 cut(s)	679, 682
FokI	GGATG	1 cut(s)	412
Fsp4HI	GCNGC	2 cut(s)	679, 682
FspBI	CTAG	3 cut(s)	116, 362, 446
GlaI	GCGC	2 cut(s)	294, 316
GluI	GCNGC	2 cut(s)	679, 682
HaeIII	GGCC	2 cut(s)	568, 578
HapII	CCGG	1 cut(s)	666
HhaI	GCGC	2 cut(s)	295, 317
Hin1II	CATG	6 cut(s)	12, 131, 203, 257, 559, 658
Hin6I	GCGC	2 cut(s)	293, 315
HinP1I	GCGC	2 cut(s)	293, 315
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	2 cut(s)	140, 476
HpaII	CCGG	1 cut(s)	666
Hpy166II	GTNNAC	2 cut(s)	475, 545
Hpy188I	TCNGA	4 cut(s)	325, 400, 409, 564
Hpy188III	TCNNGA	4 cut(s)	42, 439, 666, 717
Hpy8I	GTNNAC	2 cut(s)	475, 545
Hpy99I	CGWCG	2 cut(s)	506, 574
HpyAV	CCTTC	4 cut(s)	445, 446, 457, 593
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	2 cut(s)	177, 674
HpyCH4V	TGCA	5 cut(s)	127, 533, 681, 692, 704
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	4 cut(s)	269, 563, 618, 634
HpySE526I	ACGT	2 cut(s)	177, 674
Hsp92II	CATG	6 cut(s)	12, 131, 203, 257, 559, 658
HspAI	GCGC	2 cut(s)	293, 315
Kpn2I	TCCGGA	1 cut(s)	665
Kzo9I	GATC	2 cut(s)	303, 366
LmnI	GCTCC	2 cut(s)	186, 244
LpnPI	CCDG	6 cut(s)	10, 37, 309, 624, 679, 702
Lsp1109I	GCAGC	2 cut(s)	665, 693
LweI	GCATC	4 cut(s)	432, 487, 679, 718
MaeI	CTAG	3 cut(s)	116, 362, 446
MaeII	ACGT	2 cut(s)	177, 674
MaeIII	GTNAC	2 cut(s)	158, 284
MalI	GATC	2 cut(s)	305, 368
MboI	GATC	2 cut(s)	303, 366
MboII	GAAGA	5 cut(s)	67, 143, 340, 461, 639
MhlI	GDGCHC	1 cut(s)	183
MlsI	TGGCCA	1 cut(s)	578
MluCI	AATT	2 cut(s)	193, 419
MluNI	TGGCCA	1 cut(s)	578
MlyI	GAGTC	1 cut(s)	470
MmeI	TCCRAC	1 cut(s)	650
MnlI	CCTC	9 cut(s)	180, 194, 266, 501, 558, 627, 633, 643, 673
Mox20I	TGGCCA	1 cut(s)	578
Mph1103I	ATGCAT	1 cut(s)	694
MroI	TCCGGA	1 cut(s)	665
MroXI	GAANNNNTTC	1 cut(s)	18
MscI	TGGCCA	1 cut(s)	578
MseI	TTAA	1 cut(s)	260
MslI	CAYNNNNRTG	2 cut(s)	95, 538
Msp20I	TGGCCA	1 cut(s)	578
MspI	CCGG	1 cut(s)	666
MspR9I	CCNGG	1 cut(s)	25
Mva1269I	GAATGC	2 cut(s)	64, 357
MvaI	CCWGG	1 cut(s)	25
MvnI	CGCG	2 cut(s)	315, 521
MwoI	GCNNNNNNNGC	1 cut(s)	209
NcoI	CCATGG	1 cut(s)	654
NdeII	GATC	2 cut(s)	303, 366
NlaIII	CATG	6 cut(s)	12, 131, 203, 257, 559, 658
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	158
NsiI	ATGCAT	1 cut(s)	694
NspI	RCATGY	1 cut(s)	559
PciI	ACATGT	1 cut(s)	555
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PctI	GAATGC	2 cut(s)	64, 357
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	140
PflFI	GACNNNGTC	1 cut(s)	470
PkrI	GCNGC	2 cut(s)	680, 683
PleI	GAGTC	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	470
PscI	ACATGT	1 cut(s)	555
Psp6I	CCWGG	1 cut(s)	23
PspEI	GGTNACC	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	2 cut(s)	668, 719
PstI	CTGCAG	2 cut(s)	683, 706
PsyI	GACNNNGTC	1 cut(s)	470
RsaI	GTAC	1 cut(s)	103
RsaNI	GTAC	1 cut(s)	102
RseI	CAYNNNNRTG	2 cut(s)	95, 538
SalI	GTCGAC	1 cut(s)	473
SaqAI	TTAA	1 cut(s)	260
SatI	GCNGC	2 cut(s)	679, 682
Sau3AI	GATC	2 cut(s)	303, 366
Sau96I	GGNCC	2 cut(s)	668, 719
SchI	GAGTC	1 cut(s)	470
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	9 cut(s)	86, 121, 180, 234, 291, 347, 486, 585, 677
SfaNI	GCATC	4 cut(s)	432, 487, 679, 718
SfcI	CTRYAG	2 cut(s)	679, 702
SinI	GGWCC	2 cut(s)	668, 719
SmiMI	CAYNNNNRTG	2 cut(s)	95, 538
Sse9I	AATT	2 cut(s)	193, 419
SsiI	CCGC	2 cut(s)	313, 519
SspMI	CTAG	3 cut(s)	116, 362, 446
StyD4I	CCNGG	1 cut(s)	23
StyI	CCWWGG	3 cut(s)	240, 579, 654
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	2 cut(s)	180, 677
TaqI	TCGA	3 cut(s)	186, 474, 572
TasI	AATT	2 cut(s)	193, 419
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
TscAI	CASTG	3 cut(s)	102, 161, 691
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	2 cut(s)	678, 681
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	4 cut(s)	17, 68, 144, 476
TspRI	CASTG	3 cut(s)	102, 161, 691
Tth111I	GACNNNGTC	1 cut(s)	470
VpaK11BI	GGWCC	2 cut(s)	668, 719
XceI	RCATGY	1 cut(s)	559
XmiI	GTMKAC	2 cut(s)	474, 544
XmnI	GAANNNNTTC	1 cut(s)	18
XspI	CTAG	3 cut(s)	116, 362, 446
Zsp2I	ATGCAT	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.