Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008470.1

Orthogroup ID

OG0006944

Physical Location & Seq

Genomic Coordinates Reverse (-)

47047 .. 47355

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008470.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atgtttgaagaagggaaactcaaggacatcttcgaccccaagatgaggatagatgacgttgacgagagggtttctactgcggttatggtagcattgtggtgtatacagttagacatgactttgaggccaccaatgaccaaggttgtccaaatgcttcaaggcatctgctctgttcctcagcctccaattccgcggctttatccaaatgaattacagaagggggggacttcctcgggtccatcggactgcaacagtgatgcctacctttctgcagagagcgcctttccggttcaagaaaacatttgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

102

Amino Acids

11.33

Weight (kDa)

4.5

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006944)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30110
malus_domestica	MD15G1122900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0367661 RchiOBHm_Chr6g0297951
rosa_laevigata	RLG00000011549 RLG00000027270 RLG00000027276
rosa_multiflora	Rmu_co8343541.1_g000001 Rmu_sc0001091.1_g000014 Rmu_sc0008470.1_g000008 Rmu_sc0009775.1_g000007 Rmu_sc0027455.1_g000002
rosa_roxburghii	Rroxscaffold_4G00289420 Rroxscaffold_5G00333540 Rroxscaffold_5G00333550
rosa_rugosa	Rorug01G0336000 Rorug01G0336100 Rorug03G0303500 Rorug06G0277000
rosa_samantha	Rh1AG343100 Rh1BG304200 Rh1DG336500 Rh4BG005400 Rh6BG395800 Rh6BG396000
rosa_wichuraiana	Rw1G030530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	103
AccII	CGCG	1 cut(s)	193
AciI	CCGC	3 cut(s)	80, 191, 193
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	3 cut(s)	8, 158, 293
Ama87I	CYCGRG	1 cut(s)	232
AoxI	GGCC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	236
AvaI	CYCGRG	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	236
BbvCI	CCTCAGC	1 cut(s)	177
BccI	CCATC	1 cut(s)	247
BfmI	CTRYAG	1 cut(s)	270
BfoI	RGCGCY	1 cut(s)	282
BisI	GCNGC	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	195
Bme18I	GGWCC	1 cut(s)	236
BmeT110I	CYCGRG	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	1 cut(s)	237
BmsI	GCATC	2 cut(s)	171, 247
Bpu10I	CCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	138, 191, 231
BsaWI	WCCGGW	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
BseDI	CCNNGG	3 cut(s)	138, 191, 231
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	191
Bsh1236I	CGCG	1 cut(s)	193
BshFI	GGCC	1 cut(s)	127
BsiHKCI	CYCGRG	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	127
BsoBI	CYCGRG	1 cut(s)	232
BspACI	CCGC	3 cut(s)	80, 191, 193
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	1 cut(s)	190
BspFNI	CGCG	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	237
BspMAI	CTGCAG	1 cut(s)	274
BssECI	CCNNGG	3 cut(s)	138, 191, 231
BssNAI	GTATAC	1 cut(s)	104
BssT1I	CCWWGG	1 cut(s)	138
Bst1107I	GTATAC	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	108, 254
BstDEI	CTNAG	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	191
BstFNI	CGCG	1 cut(s)	193
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	281
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstSFI	CTRYAG	1 cut(s)	270
BstUI	CGCG	1 cut(s)	193
BstZ17I	GTATAC	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	127
BtgI	CCRYGG	1 cut(s)	191
BtsIMutI	CAGTG	1 cut(s)	259
CfoI	GCGC	1 cut(s)	281
Cfr13I	GGNCC	1 cut(s)	236
Cfr42I	CCGCGG	1 cut(s)	194
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	3 cut(s)	127, 181, 196
CviKI_1	RGCY	3 cut(s)	127, 181, 196
DdeI	CTNAG	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	1 cut(s)	118
FaiI	YATR	3 cut(s)	86, 104, 116
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	1 cut(s)	114
FblI	GTMKAC	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	194
Fsp4HI	GCNGC	1 cut(s)	194
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	1 cut(s)	194
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	1 cut(s)	287
HhaI	GCGC	1 cut(s)	281
Hin1II	CATG	1 cut(s)	118
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HpaII	CCGG	1 cut(s)	287
Hpy166II	GTNNAC	2 cut(s)	61, 104
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	2 cut(s)	61, 104
HpyAV	CCTTC	2 cut(s)	5, 211
HpyCH4III	ACNGT	2 cut(s)	108, 254
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	2 cut(s)	249, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	118
HspAI	GCGC	1 cut(s)	279
KspI	CCGCGG	1 cut(s)	194
LpnPI	CCDG	1 cut(s)	300
LweI	GCATC	2 cut(s)	171, 247
MaeII	ACGT	1 cut(s)	57
MboII	GAAGA	2 cut(s)	20, 22
MluCI	AATT	2 cut(s)	186, 209
MnlI	CCTC	6 cut(s)	39, 60, 117, 186, 192, 241
MseI	TTAA	1 cut(s)	307
MslI	CAYNNNNRTG	1 cut(s)	97
MspA1I	CMGCKG	1 cut(s)	193
MspI	CCGG	1 cut(s)	287
MvnI	CGCG	1 cut(s)	193
MwoI	GCNNNNNNNGC	1 cut(s)	278
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	1 cut(s)	237
PkrI	GCNGC	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	236
PstI	CTGCAG	1 cut(s)	274
RseI	CAYNNNNRTG	1 cut(s)	97
SacII	CCGCGG	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	307
SatI	GCNGC	1 cut(s)	194
Sau96I	GGNCC	1 cut(s)	236
SetI	ASST	3 cut(s)	60, 144, 267
SfaNI	GCATC	2 cut(s)	171, 247
SfcI	CTRYAG	1 cut(s)	270
Sfr303I	CCGCGG	1 cut(s)	194
SgrBI	CCGCGG	1 cut(s)	194
SinI	GGWCC	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	2 cut(s)	186, 209
SsiI	CCGC	3 cut(s)	80, 191, 193
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	2 cut(s)	108, 254
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	1 cut(s)	33
TasI	AATT	2 cut(s)	186, 209
TauI	GCSGC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	307
Tru9I	TTAA	1 cut(s)	307
TscAI	CASTG	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	222
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.