Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006944

Physical Location & Seq

Genomic Coordinates Forward (+)

59546690 .. 59547490

Gene Structure 801 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26744

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCAAATGGTTCCCTGGATAAATGGATTTTCAAGAAAACAAATGAAGAATGCTTATTGGATTGGGAGACAAGATTTAGTACAGCATTGGGTACAGCAAAAGGACTAGCTTATCTCCATGAAGGATGTGATTCAAAGATTATTCACTGTGACATAAAGCCTCAAAACGTGCTCCTTGACAATAATTACCATGCCAAAGTCTCAAGACTTTGGTTTGGCAAAGCTAATGACCAAGGAGCAGCTAGAGCCATGTTTTCACAACACTTGGAGGAACTCGGGGTTACCTTGCACCGGAGTGGATCACAAACCAGATTATCGGTGGGGAGAAAGAACTATGACCAATCAGAAAGTTCTGAAAAATCTCAATTTCCATCATATGCCTTCAAGATGCTAAAAGAAGGCAAAATGAAGGACATTGTTGACTCCAAGCTGAAGATAACCGCGATTATTGTTGCATTGTGGCGTATACAGCAAGACATGTGTTTGAGGCCATCAATGATTGTCCAAATTCCTCAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

173

Amino Acids

19.69

Weight (kDa)

9.03

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 68	3.4e-06	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	3 - 68	7.3e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006944)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30110
malus_domestica	MD15G1122900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0367661 RchiOBHm_Chr6g0297951
rosa_laevigata	RLG00000011549 RLG00000027270 RLG00000027276
rosa_multiflora	Rmu_co8343541.1_g000001 Rmu_sc0001091.1_g000014 Rmu_sc0008470.1_g000008 Rmu_sc0009775.1_g000007 Rmu_sc0027455.1_g000002
rosa_roxburghii	Rroxscaffold_4G00289420 Rroxscaffold_5G00333540 Rroxscaffold_5G00333550
rosa_rugosa	Rorug01G0336000 Rorug01G0336100 Rorug03G0303500 Rorug06G0277000
rosa_samantha	Rh1AG343100 Rh1BG304200 Rh1DG336500 Rh4BG005400 Rh6BG395800 Rh6BG396000
rosa_wichuraiana	Rw1G030530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	466
AccII	CGCG	1 cut(s)	443
AciI	CCGC	1 cut(s)	441
AclWI	GGATC	1 cut(s)	307
AcsI	RAATTY	1 cut(s)	507
AcuI	CTGAAG	1 cut(s)	452
AfaI	GTAC	2 cut(s)	82, 94
AfiI	CCNNNNNNNGG	1 cut(s)	291
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	3 cut(s)	34, 135, 385
AjnI	CCWGG	1 cut(s)	15
AleI	CACNNNNGTG	1 cut(s)	294
AluBI	AGCT	4 cut(s)	110, 224, 242, 430
AluI	AGCT	4 cut(s)	110, 224, 242, 430
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	2 cut(s)	62, 205
AlwI	GGATC	1 cut(s)	307
Ama87I	CYCGRG	1 cut(s)	275
AoxI	GGCC	1 cut(s)	488
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	507
AvaI	CYCGRG	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	174
BbvCI	CCTCAGC	1 cut(s)	513
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	2 cut(s)	379, 499
BciT130I	CCWGG	1 cut(s)	17
BcoDI	GTCTC	2 cut(s)	62, 205
BfaI	CTAG	2 cut(s)	107, 243
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	17
BmeT110I	CYCGRG	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	13
BmrFI	CCNGG	1 cut(s)	17
BmsI	GCATC	1 cut(s)	378
Bpu10I	CCTNAGC	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	187
BsaJI	CCNNGG	2 cut(s)	15, 232
BsaWI	WCCGGW	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	2 cut(s)	15, 232
BseGI	GGATG	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseXI	GCAGC	1 cut(s)	251
Bsh1236I	CGCG	1 cut(s)	443
BshFI	GGCC	1 cut(s)	490
BsiHKAI	GWGCWC	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	292
BslI	CCNNNNNNNGG	1 cut(s)	291
BsmAI	GTCTC	2 cut(s)	62, 205
BsmI	GAATGC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	490
BsoBI	CYCGRG	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	299
BspACI	CCGC	1 cut(s)	441
BspANI	GGCC	1 cut(s)	490
BspFNI	CGCG	1 cut(s)	443
BspLI	GGNNCC	1 cut(s)	13
BspPI	GGATC	1 cut(s)	307
BssECI	CCNNGG	2 cut(s)	15, 232
BssMI	GATC	1 cut(s)	299
BssNAI	GTATAC	1 cut(s)	467
BssT1I	CCWWGG	1 cut(s)	232
Bst1107I	GTATAC	1 cut(s)	467
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	513
BstEII	GGTNACC	1 cut(s)	280
BstF5I	GGATG	1 cut(s)	131
BstFNI	CGCG	1 cut(s)	443
BstKTI	GATC	1 cut(s)	302
BstMAI	GTCTC	2 cut(s)	62, 205
BstMBI	GATC	1 cut(s)	299
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 469
BstNI	CCWGG	1 cut(s)	17
BstNSI	RCATGY	1 cut(s)	481
BstPI	GGTNACC	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	15
BstUI	CGCG	1 cut(s)	443
BstV1I	GCAGC	1 cut(s)	251
BstZ17I	GTATAC	1 cut(s)	467
BsuRI	GGCC	1 cut(s)	490
BtsCI	GGATG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	81, 93
CviAII	CATG	4 cut(s)	119, 191, 250, 478
CviJI	RGCY	7 cut(s)	110, 160, 224, 242, 248, 430, 490
CviKI_1	RGCY	7 cut(s)	110, 160, 224, 242, 248, 430, 490
CviQI	GTAC	2 cut(s)	81, 93
DdeI	CTNAG	1 cut(s)	513
DpnI	GATC	1 cut(s)	301
DpnII	GATC	1 cut(s)	299
Eco130I	CCWWGG	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	452
Eco88I	CYCGRG	1 cut(s)	275
Eco91I	GGTNACC	1 cut(s)	280
EcoO65I	GGTNACC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	232
FaeI	CATG	4 cut(s)	122, 194, 253, 481
FaiI	YATR	9 cut(s)	120, 155, 192, 251, 336, 376, 378, 467, 479
FatI	CATG	4 cut(s)	118, 190, 249, 477
FauNDI	CATATG	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	466
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	2 cut(s)	107, 243
GluI	GCNGC	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	490
HapII	CCGG	1 cut(s)	292
Hin1II	CATG	4 cut(s)	122, 194, 253, 481
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	2 cut(s)	131, 422
HpaII	CCGG	1 cut(s)	292
Hpy166II	GTNNAC	2 cut(s)	421, 467
Hpy188I	TCNGA	2 cut(s)	346, 355
Hpy188III	TCNNGA	3 cut(s)	34, 204, 385
Hpy8I	GTNNAC	2 cut(s)	421, 467
HpyAV	CCTTC	4 cut(s)	116, 391, 392, 403
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	2 cut(s)	289, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 469
HpyF3I	CTNAG	1 cut(s)	513
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	4 cut(s)	122, 194, 253, 481
Kzo9I	GATC	1 cut(s)	299
LmnI	GCTCC	2 cut(s)	177, 236
LpnPI	CCDG	4 cut(s)	2, 29, 305, 322
Lsp1109I	GCAGC	1 cut(s)	251
LweI	GCATC	1 cut(s)	378
MaeI	CTAG	2 cut(s)	107, 243
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	2 cut(s)	149, 280
MalI	GATC	1 cut(s)	301
MboI	GATC	1 cut(s)	299
MboII	GAAGA	2 cut(s)	59, 445
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	3 cut(s)	184, 365, 507
MlyI	GAGTC	1 cut(s)	416
MnlI	CCTC	4 cut(s)	171, 262, 480, 522
MslI	CAYNNNNRTG	1 cut(s)	294
MspI	CCGG	1 cut(s)	292
MspR9I	CCNGG	1 cut(s)	17
Mva1269I	GAATGC	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	17
MvnI	CGCG	1 cut(s)	443
MwoI	GCNNNNNNNGC	2 cut(s)	245, 469
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	1 cut(s)	299
NlaIII	CATG	4 cut(s)	122, 194, 253, 481
NlaIV	GGNNCC	1 cut(s)	13
NmuCI	GTSAC	1 cut(s)	149
NspI	RCATGY	1 cut(s)	481
OliI	CACNNNNGTG	1 cut(s)	294
PciI	ACATGT	1 cut(s)	477
PctI	GAATGC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
PscI	ACATGT	1 cut(s)	477
Psp6I	CCWGG	1 cut(s)	15
PspEI	GGTNACC	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	13
RsaI	GTAC	2 cut(s)	82, 94
RsaNI	GTAC	2 cut(s)	81, 93
RseI	CAYNNNNRTG	1 cut(s)	294
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	1 cut(s)	299
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	1 cut(s)	17
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	6 cut(s)	112, 171, 226, 244, 287, 432
SfaNI	GCATC	1 cut(s)	378
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
Sse9I	AATT	3 cut(s)	184, 365, 507
SsiI	CCGC	1 cut(s)	441
SspMI	CTAG	2 cut(s)	107, 243
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	1 cut(s)	171
TasI	AATT	3 cut(s)	184, 365, 507
TatI	WGTACW	1 cut(s)	80
TfiI	GAWTC	1 cut(s)	131
TscAI	CASTG	1 cut(s)	152
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	3 cut(s)	60, 135, 422
TspRI	CASTG	1 cut(s)	152
XapI	RAATTY	1 cut(s)	507
XceI	RCATGY	1 cut(s)	481
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	466
XspI	CTAG	2 cut(s)	107, 243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.