Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027455.1

Orthogroup ID

OG0006944

Physical Location & Seq

Genomic Coordinates Reverse (-)

1501 .. 2511

Gene Structure 1011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027455.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atgccaatccgttacagttacaaggatcttaaaactgcgactaacaacttctcaaataagcttgggcaaggaggttttggctcagtttacttgggggttctcccagatggaactcgacttgctgtgaagaagttgaaagccaataaatggcagggagagaaagattttcaagctgaagttagaatcagtggcagtatccatcatctgcacttggtcaggctccggggcttctgtgcaaaaggaagcaatcgacttcttgcctacgagtacatggcaaatggatcccttgacaaatggattttcagggaaaaaaatgaagagttcgtattggattgggggacaagattcaacatagcagtgggtattgccaaaggaatagcttatctccatgaagattgtgatttgaagattattcactgtgacataaagcctcaaaacgtgctccttgacgacaattacaatgccaaactcacagattttggtctggcagtgctgatgaccagggagcaaagccacttcgacccagaagtagcgcaaggaactataggatacatggccccagagtggttctttaaaaatttaggtggtgtttcggagaaaagtgacgtgtacagctacggaatgctgctgctggagatcattggcggaagaaggaacctgaacgcattacatccctgctctgatgaaatttattttccatcgtatgcctccaagatgttggaagaagggaaactcaaggacatcttcgaccgcaagatgaggatagatgacgttgacgagagggtttctactgcggttatggtagcattgtggtgtatacagatagacatgactttgaggccaccaatgaccaaggttgtccaaatgcttcaaggcatctgctctgttcctcagcctccaattccggtttttccaactgaattacccaagggggggacttcctccggttcatcggactgcaacagaaacgctgcagagagcgcctttcctggccaagataacatttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

336

Amino Acids

37.66

Weight (kDa)

6.66

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006944)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30110
malus_domestica	MD15G1122900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0367661 RchiOBHm_Chr6g0297951
rosa_laevigata	RLG00000011549 RLG00000027270 RLG00000027276
rosa_multiflora	Rmu_co8343541.1_g000001 Rmu_sc0001091.1_g000014 Rmu_sc0008470.1_g000008 Rmu_sc0009775.1_g000007 Rmu_sc0027455.1_g000002
rosa_roxburghii	Rroxscaffold_4G00289420 Rroxscaffold_5G00333540 Rroxscaffold_5G00333550
rosa_rugosa	Rorug01G0336000 Rorug01G0336100 Rorug03G0303500 Rorug06G0277000
rosa_samantha	Rh1AG343100 Rh1BG304200 Rh1DG336500 Rh4BG005400 Rh6BG395800 Rh6BG396000
rosa_wichuraiana	Rw1G030530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	147
AccI	GTMKAC	1 cut(s)	817
AciI	CCGC	3 cut(s)	645, 751, 794
AclWI	GGATC	3 cut(s)	33, 276, 289
AcoI	YGGCCR	1 cut(s)	991
AcsI	RAATTY	2 cut(s)	577, 687
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	2 cut(s)	269, 611
AfiI	CCNNNNNNNGG	4 cut(s)	147, 564, 932, 933
AflIII	ACRYGT	1 cut(s)	606
AgsI	TTSAA	5 cut(s)	136, 170, 349, 406, 872
AjiI	CACGTC	1 cut(s)	607
AjnI	CCWGG	2 cut(s)	500, 988
AluBI	AGCT	4 cut(s)	61, 173, 380, 615
AluI	AGCT	4 cut(s)	61, 173, 380, 615
Alw21I	GWGCWC	1 cut(s)	444
AlwI	GGATC	3 cut(s)	33, 276, 289
AoxI	GGCC	3 cut(s)	555, 839, 991
ApeKI	GCWGC	3 cut(s)	625, 628, 971
ApoI	RAATTY	2 cut(s)	577, 687
AspLEI	GCGC	2 cut(s)	535, 983
AspS9I	GGNCC	1 cut(s)	556
AsuC2I	CCSGG	1 cut(s)	224
BalI	TGGCCA	1 cut(s)	993
BamHI	GGATCC	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	444
BbvCI	CCTCAGC	1 cut(s)	891
BbvI	GCAGC	3 cut(s)	612, 615, 958
BccI	CCATC	3 cut(s)	101, 207, 706
BciT130I	CCWGG	2 cut(s)	502, 990
BciVI	GTATCC	2 cut(s)	206, 542
BcnI	CCSGG	1 cut(s)	224
BfmI	CTRYAG	2 cut(s)	543, 972
BfoI	RGCGCY	1 cut(s)	984
BfuI	GTATCC	2 cut(s)	206, 542
BisI	GCNGC	3 cut(s)	626, 629, 972
BlsI	GCNGC	3 cut(s)	627, 630, 973
Bme1390I	CCNGG	3 cut(s)	224, 502, 990
BmgBI	CACGTC	1 cut(s)	607
BmgT120I	GGNCC	1 cut(s)	556
BmiI	GGNNCC	4 cut(s)	221, 283, 558, 656
BmrFI	CCNGG	3 cut(s)	224, 502, 990
BmsI	GCATC	1 cut(s)	885
BpmI	CTGGAG	1 cut(s)	653
Bpu10I	CCTNAGC	1 cut(s)	891
BpuEI	CTTGAG	1 cut(s)	719
BpuMI	CCSGG	1 cut(s)	224
BsaJI	CCNNGG	4 cut(s)	223, 501, 852, 927
BsaWI	WCCGGW	2 cut(s)	904, 944
Bsc4I	CCNNNNNNNGG	4 cut(s)	147, 564, 932, 933
BseBI	CCWGG	2 cut(s)	502, 990
BseDI	CCNNGG	4 cut(s)	223, 501, 852, 927
BseGI	GGATG	1 cut(s)	670
BseLI	CCNNNNNNNGG	4 cut(s)	147, 564, 932, 933
BseMII	CTCAG	2 cut(s)	96, 905
BseXI	GCAGC	3 cut(s)	612, 615, 958
BsgI	GTGCAG	1 cut(s)	191
Bsh1285I	CGRYCG	1 cut(s)	751
BshFI	GGCC	3 cut(s)	557, 841, 993
BsiEI	CGRYCG	1 cut(s)	751
BsiHKAI	GWGCWC	1 cut(s)	444
BsiSI	CCGG	3 cut(s)	223, 905, 945
BslFI	GGGAC	2 cut(s)	352, 949
BslI	CCNNNNNNNGG	4 cut(s)	147, 564, 932, 933
BsmFI	GGGAC	2 cut(s)	352, 949
BsmI	GAATGC	1 cut(s)	627
BsnI	GGCC	3 cut(s)	557, 841, 993
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp1407I	TGTACA	1 cut(s)	609
Bsp143I	GATC	3 cut(s)	25, 281, 636
BspACI	CCGC	3 cut(s)	645, 751, 794
BspANI	GGCC	3 cut(s)	557, 841, 993
BspCNI	CTCAG	2 cut(s)	95, 904
BspLI	GGNNCC	4 cut(s)	221, 283, 558, 656
BspMAI	CTGCAG	1 cut(s)	976
BspPI	GGATC	3 cut(s)	33, 276, 289
BsrGI	TGTACA	1 cut(s)	609
BssECI	CCNNGG	4 cut(s)	223, 501, 852, 927
BssMI	GATC	3 cut(s)	25, 281, 636
BssNAI	GTATAC	1 cut(s)	818
BssT1I	CCWWGG	2 cut(s)	852, 927
Bst1107I	GTATAC	1 cut(s)	818
Bst2UI	CCWGG	2 cut(s)	502, 990
Bst4CI	ACNGT	2 cut(s)	17, 419
Bst6I	CTCTTC	1 cut(s)	312
BstAUI	TGTACA	1 cut(s)	609
BstDEI	CTNAG	2 cut(s)	82, 891
BstF5I	GGATG	1 cut(s)	670
BstH2I	RGCGCY	1 cut(s)	984
BstHHI	GCGC	2 cut(s)	535, 983
BstKTI	GATC	3 cut(s)	28, 284, 639
BstMBI	GATC	3 cut(s)	25, 281, 636
BstMCI	CGRYCG	1 cut(s)	751
BstMWI	GCNNNNNNNGC	1 cut(s)	980
BstNI	CCWGG	2 cut(s)	502, 990
BstSCI	CCNGG	3 cut(s)	222, 500, 988
BstSFI	CTRYAG	2 cut(s)	543, 972
BstV1I	GCAGC	3 cut(s)	612, 615, 958
BstX2I	RGATCY	2 cut(s)	25, 281
BstXI	CCANNNNNNTGG	1 cut(s)	718
BstYI	RGATCY	2 cut(s)	25, 281
BstZ17I	GTATAC	1 cut(s)	818
BsuI	GTATCC	2 cut(s)	206, 542
BsuRI	GGCC	3 cut(s)	557, 841, 993
BtrI	CACGTC	1 cut(s)	607
BtsCI	GGATG	1 cut(s)	670
BtsI	GCAGTG	2 cut(s)	363, 495
BtsIMutI	CAGTG	4 cut(s)	193, 363, 415, 495
CfoI	GCGC	2 cut(s)	535, 983
Cfr13I	GGNCC	1 cut(s)	556
Csp6I	GTAC	2 cut(s)	268, 610
CviAII	CATG	4 cut(s)	271, 389, 553, 829
CviQI	GTAC	2 cut(s)	268, 610
DdeI	CTNAG	2 cut(s)	82, 891
DpnI	GATC	3 cut(s)	27, 283, 638
DpnII	GATC	3 cut(s)	25, 281, 636
DraI	TTTAAA	1 cut(s)	574
EaeI	YGGCCR	1 cut(s)	991
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
EciI	GGCGGA	1 cut(s)	660
Eco130I	CCWWGG	2 cut(s)	852, 927
Eco57I	CTGAAG	1 cut(s)	195
EcoRII	CCWGG	2 cut(s)	500, 988
EcoT14I	CCWWGG	2 cut(s)	852, 927
ErhI	CCWWGG	2 cut(s)	852, 927
FaeI	CATG	4 cut(s)	274, 392, 556, 832
FalI	AAGNNNNNCTT	2 cut(s)	728, 760
FaqI	GGGAC	2 cut(s)	352, 949
FatI	CATG	4 cut(s)	270, 388, 552, 828
FblI	GTMKAC	1 cut(s)	817
Fnu4HI	GCNGC	3 cut(s)	626, 629, 972
FokI	GGATG	1 cut(s)	657
Fsp4HI	GCNGC	3 cut(s)	626, 629, 972
GlaI	GCGC	2 cut(s)	534, 982
GluI	GCNGC	3 cut(s)	626, 629, 972
GsuI	CTGGAG	1 cut(s)	653
HaeII	RGCGCY	1 cut(s)	984
HaeIII	GGCC	3 cut(s)	557, 841, 993
HapII	CCGG	3 cut(s)	223, 905, 945
HhaI	GCGC	2 cut(s)	535, 983
Hin1II	CATG	4 cut(s)	274, 392, 556, 832
Hin6I	GCGC	2 cut(s)	533, 981
HinP1I	GCGC	2 cut(s)	533, 981
HincII	GTYRAC	1 cut(s)	775
HindII	GTYRAC	1 cut(s)	775
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	2 cut(s)	183, 345
HpaII	CCGG	3 cut(s)	223, 905, 945
Hpy166II	GTNNAC	4 cut(s)	88, 610, 775, 818
Hpy188I	TCNGA	3 cut(s)	595, 682, 955
Hpy8I	GTNNAC	4 cut(s)	88, 610, 775, 818
HpyAV	CCTTC	2 cut(s)	645, 719
HpyCH4III	ACNGT	2 cut(s)	17, 419
HpyCH4IV	ACGT	3 cut(s)	438, 606, 771
HpyCH4V	TGCA	4 cut(s)	208, 236, 960, 974
HpyF10VI	GCNNNNNNNGC	1 cut(s)	980
HpyF3I	CTNAG	2 cut(s)	82, 891
HpySE526I	ACGT	3 cut(s)	438, 606, 771
Hsp92II	CATG	4 cut(s)	274, 392, 556, 832
HspAI	GCGC	2 cut(s)	533, 981
Kzo9I	GATC	3 cut(s)	25, 281, 636
LmnI	GCTCC	3 cut(s)	225, 447, 505
Lsp1109I	GCAGC	3 cut(s)	612, 615, 958
LweI	GCATC	1 cut(s)	885
MaeII	ACGT	3 cut(s)	438, 606, 771
MaeIII	GTNAC	4 cut(s)	11, 17, 419, 602
MalI	GATC	3 cut(s)	27, 283, 638
MboI	GATC	3 cut(s)	25, 281, 636
MboII	GAAGA	7 cut(s)	139, 329, 404, 418, 660, 734, 736
MflI	RGATCY	2 cut(s)	25, 281
MhlI	GDGCHC	1 cut(s)	444
MlsI	TGGCCA	1 cut(s)	993
MluCI	AATT	5 cut(s)	454, 577, 687, 900, 920
MluNI	TGGCCA	1 cut(s)	993
MmeI	TCCRAC	2 cut(s)	699, 938
MnlI	CCTC	9 cut(s)	65, 441, 718, 753, 774, 831, 900, 906, 952
Mox20I	TGGCCA	1 cut(s)	993
MscI	TGGCCA	1 cut(s)	993
MseI	TTAA	2 cut(s)	30, 573
MslI	CAYNNNNRTG	2 cut(s)	356, 811
Msp20I	TGGCCA	1 cut(s)	993
MspI	CCGG	3 cut(s)	223, 905, 945
MspR9I	CCNGG	3 cut(s)	224, 502, 990
Mva1269I	GAATGC	1 cut(s)	627
MvaI	CCWGG	2 cut(s)	502, 990
MwoI	GCNNNNNNNGC	1 cut(s)	980
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	3 cut(s)	25, 281, 636
NlaIII	CATG	4 cut(s)	274, 392, 556, 832
NlaIV	GGNNCC	4 cut(s)	221, 283, 558, 656
NmuCI	GTSAC	2 cut(s)	419, 602
PctI	GAATGC	1 cut(s)	627
PfeI	GAWTC	2 cut(s)	183, 345
PflMI	CCANNNNNTGG	1 cut(s)	147
PkrI	GCNGC	3 cut(s)	627, 630, 973
Psp6I	CCWGG	2 cut(s)	500, 988
PspGI	CCWGG	2 cut(s)	500, 988
PspN4I	GGNNCC	4 cut(s)	221, 283, 558, 656
PspPI	GGNCC	1 cut(s)	556
PstI	CTGCAG	1 cut(s)	976
PsuI	RGATCY	2 cut(s)	25, 281
RsaI	GTAC	2 cut(s)	269, 611
RsaNI	GTAC	2 cut(s)	268, 610
RseI	CAYNNNNRTG	2 cut(s)	356, 811
SaqAI	TTAA	2 cut(s)	30, 573
SatI	GCNGC	3 cut(s)	626, 629, 972
Sau3AI	GATC	3 cut(s)	25, 281, 636
Sau96I	GGNCC	1 cut(s)	556
ScrFI	CCNGG	3 cut(s)	224, 502, 990
SduI	GDGCHC	1 cut(s)	444
SfaNI	GCATC	1 cut(s)	885
SfcI	CTRYAG	2 cut(s)	543, 972
SmiMI	CAYNNNNRTG	2 cut(s)	356, 811
SmlI	CTYRAG	1 cut(s)	734
SmoI	CTYRAG	1 cut(s)	734
Sse9I	AATT	5 cut(s)	454, 577, 687, 900, 920
SsiI	CCGC	3 cut(s)	645, 751, 794
StyD4I	CCNGG	3 cut(s)	222, 500, 988
StyI	CCWWGG	2 cut(s)	852, 927
TaaI	ACNGT	2 cut(s)	17, 419
TaiI	ACGT	3 cut(s)	441, 609, 774
TaqI	TCGA	4 cut(s)	115, 250, 519, 747
TasI	AATT	5 cut(s)	454, 577, 687, 900, 920
TatI	WGTACW	2 cut(s)	267, 609
TfiI	GAWTC	2 cut(s)	183, 345
Tru1I	TTAA	2 cut(s)	30, 573
Tru9I	TTAA	2 cut(s)	30, 573
TscAI	CASTG	4 cut(s)	193, 363, 422, 495
TseFI	GTSAC	2 cut(s)	419, 602
TseI	GCWGC	3 cut(s)	625, 628, 971
Tsp45I	GTSAC	2 cut(s)	419, 602
TspDTI	ATGAA	4 cut(s)	330, 405, 699, 939
TspGWI	ACGGA	1 cut(s)	633
TspRI	CASTG	4 cut(s)	193, 363, 422, 495
Van91I	CCANNNNNTGG	1 cut(s)	147
XapI	RAATTY	2 cut(s)	577, 687
XmiI	GTMKAC	1 cut(s)	817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.