Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006944

Physical Location & Seq

Genomic Coordinates Forward (+)

62404343 .. 62404663

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG395800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTTGGAAGAAGGGAAACTCAAGGACATCTTCGACCCCAAGGTGAATATAGATGACGTTGACGAGAGGGTGTCTACTGCGGTTATGGTAGCATTGTGGTGTATACAGGAAGACATGACTTTGAGGCCAGCAATGACGAAGGTTGTCCAAATGCTTGAAGGCATCTGCTCTGTTCCTCGGCCTCCAACTTCCTCAACAATGGGGTCACGCCTTTACTCGAGTTTCTTCAAATCAATGAGTGAAGTGGGGACTTCCTCAGGTCCATCGGACTGGAACAGCGATACCCACCTTTCTGCAGTGCGCCTTTCCGGGCCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

106

Amino Acids

11.68

Weight (kDa)

5.01

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006944)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30110
malus_domestica	MD15G1122900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0367661 RchiOBHm_Chr6g0297951
rosa_laevigata	RLG00000011549 RLG00000027270 RLG00000027276
rosa_multiflora	Rmu_co8343541.1_g000001 Rmu_sc0001091.1_g000014 Rmu_sc0008470.1_g000008 Rmu_sc0009775.1_g000007 Rmu_sc0027455.1_g000002
rosa_roxburghii	Rroxscaffold_4G00289420 Rroxscaffold_5G00333540 Rroxscaffold_5G00333550
rosa_rugosa	Rorug01G0336000 Rorug01G0336100 Rorug03G0303500 Rorug06G0277000
rosa_samantha	Rh1AG343100 Rh1BG304200 Rh1DG336500 Rh4BG005400 Rh6BG395800 Rh6BG396000
rosa_wichuraiana	Rw1G030530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	74, 103
AciI	CCGC	1 cut(s)	80
AgsI	TTSAA	2 cut(s)	158, 229
Ama87I	CYCGRG	1 cut(s)	217
AoxI	GGCC	3 cut(s)	125, 179, 311
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	2 cut(s)	260, 311
AsuC2I	CCSGG	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	217
AvaII	GGWCC	1 cut(s)	260
AxyI	CCTNAGG	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	117
BccI	CCATC	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	310
BfmI	CTRYAG	1 cut(s)	294
Bme1390I	CCNGG	1 cut(s)	310
Bme18I	GGWCC	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	217
BmgT120I	GGNCC	2 cut(s)	260, 311
BmrFI	CCNGG	1 cut(s)	310
BmsI	GCATC	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	5
BpuMI	CCSGG	1 cut(s)	310
BsaJI	CCNNGG	2 cut(s)	39, 176
Bse1I	ACTGG	1 cut(s)	275
Bse21I	CCTNAGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	138
BseDI	CCNNGG	2 cut(s)	39, 176
BseMI	GCAATG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	275
BshFI	GGCC	3 cut(s)	127, 181, 313
BsiHKCI	CYCGRG	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	309
BslFI	GGGAC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	3 cut(s)	127, 181, 313
BsoBI	CYCGRG	1 cut(s)	217
BspACI	CCGC	1 cut(s)	80
BspANI	GGCC	3 cut(s)	127, 181, 313
BspCNI	CTCAG	1 cut(s)	269
BspMAI	CTGCAG	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	39, 176
BssNAI	GTATAC	1 cut(s)	104
BssT1I	CCWWGG	1 cut(s)	39
Bst1107I	GTATAC	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	308
BstSFI	CTRYAG	1 cut(s)	294
BstV2I	GAAGAC	1 cut(s)	117
BstXI	CCANNNNNNTGG	1 cut(s)	270
BstZ17I	GTATAC	1 cut(s)	104
Bsu36I	CCTNAGG	1 cut(s)	256
BsuRI	GGCC	3 cut(s)	127, 181, 313
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	129
CfoI	GCGC	1 cut(s)	303
Cfr13I	GGNCC	2 cut(s)	260, 311
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	3 cut(s)	127, 181, 313
CviKI_1	RGCY	3 cut(s)	127, 181, 313
DdeI	CTNAG	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	260
Eco81I	CCTNAGG	1 cut(s)	256
Eco88I	CYCGRG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	1 cut(s)	118
FaiI	YATR	4 cut(s)	50, 86, 104, 116
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	1 cut(s)	114
FblI	GTMKAC	2 cut(s)	74, 103
GlaI	GCGC	1 cut(s)	302
HaeIII	GGCC	3 cut(s)	127, 181, 313
HapII	CCGG	1 cut(s)	309
HhaI	GCGC	1 cut(s)	303
Hin1II	CATG	1 cut(s)	118
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HpaII	CCGG	1 cut(s)	309
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	3 cut(s)	61, 75, 104
Hpy188I	TCNGA	1 cut(s)	268
Hpy8I	GTNNAC	3 cut(s)	61, 75, 104
HpyAV	CCTTC	3 cut(s)	5, 133, 152
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	1 cut(s)	296
HpyF3I	CTNAG	1 cut(s)	256
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	118
HspAI	GCGC	1 cut(s)	301
LpnPI	CCDG	4 cut(s)	92, 141, 243, 256
LweI	GCATC	1 cut(s)	171
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	204
MboII	GAAGA	4 cut(s)	20, 22, 122, 217
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	6 cut(s)	60, 117, 186, 192, 202, 265
MslI	CAYNNNNRTG	1 cut(s)	97
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	1 cut(s)	310
NciI	CCSGG	1 cut(s)	310
NlaIII	CATG	1 cut(s)	118
NmeAIII	GCCGAG	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	204
PaeR7I	CTCGAG	1 cut(s)	217
PspPI	GGNCC	2 cut(s)	260, 311
PspXI	VCTCGAGB	1 cut(s)	217
PstI	CTGCAG	1 cut(s)	298
RseI	CAYNNNNRTG	1 cut(s)	97
Sau96I	GGNCC	2 cut(s)	260, 311
ScrFI	CCNGG	1 cut(s)	310
SetI	ASST	5 cut(s)	45, 60, 144, 262, 291
SfaNI	GCATC	1 cut(s)	171
SfcI	CTRYAG	1 cut(s)	294
Sfr274I	CTCGAG	1 cut(s)	217
SinI	GGWCC	1 cut(s)	260
SlaI	CTCGAG	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	97
SmlI	CTYRAG	2 cut(s)	20, 217
SmoI	CTYRAG	2 cut(s)	20, 217
SsiI	CCGC	1 cut(s)	80
StyD4I	CCNGG	1 cut(s)	308
StyI	CCWWGG	1 cut(s)	39
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	33, 218
TscAI	CASTG	1 cut(s)	303
TseFI	GTSAC	1 cut(s)	204
Tsp45I	GTSAC	1 cut(s)	204
TspRI	CASTG	1 cut(s)	303
VpaK11BI	GGWCC	1 cut(s)	260
XhoI	CTCGAG	1 cut(s)	217
XmiI	GTMKAC	2 cut(s)	74, 103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.