Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8343541.1

Orthogroup ID

OG0006944

Physical Location & Seq

Genomic Coordinates Forward (+)

349 .. 759

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8343541.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgctgctgctggagatcattggtggaagaaagaacgacgacccatcagaaacatctgaaaaatcacattttccattgtatgccgtcaagatgttggaagaaggtaaactcaaggacatcttcgactccaaggtgaggatagacgacgttgacgagagggtctctactgcggctatggtagcattgtggtgcatacaggaagacatgaatttgaggccagcaatgaccaaggttgtccaaatacttgaaggcatctgctctgttcctcagcctccaacttcctcaacaatggggtcccgcctttactcgagtttcttcgaatcaatgagcgaaagggggacttcctccggtccatcagactgcaacagcgatgcctacctttctgcagtgtgcctatccgggccaagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

136

Amino Acids

14.94

Weight (kDa)

4.75

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006944)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30110
malus_domestica	MD15G1122900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0367661 RchiOBHm_Chr6g0297951
rosa_laevigata	RLG00000011549 RLG00000027270 RLG00000027276
rosa_multiflora	Rmu_co8343541.1_g000001 Rmu_sc0001091.1_g000014 Rmu_sc0008470.1_g000008 Rmu_sc0009775.1_g000007 Rmu_sc0027455.1_g000002
rosa_roxburghii	Rroxscaffold_4G00289420 Rroxscaffold_5G00333540 Rroxscaffold_5G00333550
rosa_rugosa	Rorug01G0336000 Rorug01G0336100 Rorug03G0303500 Rorug06G0277000
rosa_samantha	Rh1AG343100 Rh1BG304200 Rh1DG336500 Rh4BG005400 Rh6BG395800 Rh6BG396000
rosa_wichuraiana	Rw1G030530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AciI	CCGC	2 cut(s)	170, 298
AcsI	RAATTY	1 cut(s)	208
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	1 cut(s)	248
Alw26I	GTCTC	1 cut(s)	166
Ama87I	CYCGRG	1 cut(s)	307
AoxI	GGCC	2 cut(s)	215, 401
ApeKI	GCWGC	2 cut(s)	4, 7
ApoI	RAATTY	1 cut(s)	208
AspS9I	GGNCC	3 cut(s)	294, 350, 401
AsuC2I	CCSGG	1 cut(s)	400
AsuHPI	GGTGA	1 cut(s)	145
AsuII	TTCGAA	1 cut(s)	318
AvaI	CYCGRG	1 cut(s)	307
AvaII	GGWCC	2 cut(s)	294, 350
BbsI	GAAGAC	1 cut(s)	207
BbvCI	CCTCAGC	1 cut(s)	267
BccI	CCATC	2 cut(s)	52, 361
BceAI	ACGGC	1 cut(s)	68
BcnI	CCSGG	1 cut(s)	400
BcoDI	GTCTC	1 cut(s)	166
BfmI	CTRYAG	1 cut(s)	384
BisI	GCNGC	3 cut(s)	5, 8, 171
BlsI	GCNGC	3 cut(s)	6, 9, 172
Bme1390I	CCNGG	1 cut(s)	400
Bme18I	GGWCC	2 cut(s)	294, 350
BmeT110I	CYCGRG	1 cut(s)	307
BmgT120I	GGNCC	3 cut(s)	294, 350, 401
BmiI	GGNNCC	2 cut(s)	295, 296
BmrFI	CCNGG	1 cut(s)	400
BmsI	GCATC	2 cut(s)	261, 361
BpiI	GAAGAC	1 cut(s)	207
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
BpmI	CTGGAG	1 cut(s)	32
Bpu10I	CCTNAGC	1 cut(s)	267
Bpu14I	TTCGAA	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	400
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	129, 228
BsaWI	WCCGGW	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse3DI	GCAATG	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	129, 228
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	281
BshFI	GGCC	2 cut(s)	217, 403
BsiHKCI	CYCGRG	1 cut(s)	307
BsiSI	CCGG	2 cut(s)	348, 399
BslFI	GGGAC	2 cut(s)	280, 352
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	166
BsmFI	GGGAC	2 cut(s)	280, 352
BsnI	GGCC	2 cut(s)	217, 403
Bso31I	GGTCTC	1 cut(s)	166
BsoBI	CYCGRG	1 cut(s)	307
Bsp119I	TTCGAA	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	15
BspACI	CCGC	2 cut(s)	170, 298
BspANI	GGCC	2 cut(s)	217, 403
BspCNI	CTCAG	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	295, 296
BspMAI	CTGCAG	1 cut(s)	388
BspT104I	TTCGAA	1 cut(s)	318
BspTNI	GGTCTC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	228
BssECI	CCNNGG	2 cut(s)	129, 228
BssMI	GATC	1 cut(s)	15
BssT1I	CCWWGG	2 cut(s)	129, 228
BstBI	TTCGAA	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	1 cut(s)	267
BstKTI	GATC	1 cut(s)	18
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	398
BstSFI	CTRYAG	1 cut(s)	384
BstV2I	GAAGAC	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	217, 403
BtgZI	GCGATG	1 cut(s)	384
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	1 cut(s)	393
Cac8I	GCNNGC	1 cut(s)	219
Cfr13I	GGNCC	3 cut(s)	294, 350, 401
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	4 cut(s)	173, 217, 271, 403
CviKI_1	RGCY	4 cut(s)	173, 217, 271, 403
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
Eco130I	CCWWGG	2 cut(s)	129, 228
Eco31I	GGTCTC	1 cut(s)	166
Eco47I	GGWCC	2 cut(s)	294, 350
Eco88I	CYCGRG	1 cut(s)	307
EcoO109I	RGGNCCY	1 cut(s)	294
EcoT14I	CCWWGG	2 cut(s)	129, 228
ErhI	CCWWGG	2 cut(s)	129, 228
FaeI	CATG	1 cut(s)	208
FaiI	YATR	4 cut(s)	81, 176, 194, 206
FalI	AAGNNNNNCTT	4 cut(s)	104, 136, 325, 357
FaqI	GGGAC	2 cut(s)	280, 352
FatI	CATG	1 cut(s)	204
FauI	CCCGC	1 cut(s)	305
Fnu4HI	GCNGC	3 cut(s)	5, 8, 171
Fsp4HI	GCNGC	3 cut(s)	5, 8, 171
GluI	GCNGC	3 cut(s)	5, 8, 171
GsuI	CTGGAG	1 cut(s)	32
HaeIII	GGCC	2 cut(s)	217, 403
HapII	CCGG	2 cut(s)	348, 399
Hin1II	CATG	1 cut(s)	208
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	2 cut(s)	125, 320
HpaII	CCGG	2 cut(s)	348, 399
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	2 cut(s)	107, 151
Hpy188I	TCNGA	3 cut(s)	49, 58, 358
Hpy188III	TCNNGA	1 cut(s)	88
Hpy8I	GTNNAC	2 cut(s)	107, 151
Hpy99I	CGWCG	2 cut(s)	41, 149
HpyAV	CCTTC	2 cut(s)	95, 242
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	3 cut(s)	192, 363, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	1 cut(s)	267
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	208
KflI	GGGWCCC	1 cut(s)	294
Kzo9I	GATC	1 cut(s)	15
LpnPI	CCDG	3 cut(s)	182, 231, 361
LweI	GCATC	2 cut(s)	261, 361
MaeII	ACGT	1 cut(s)	147
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	5 cut(s)	39, 110, 112, 212, 307
MluCI	AATT	1 cut(s)	208
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	2 cut(s)	75, 299
MnlI	CCTC	7 cut(s)	129, 150, 207, 276, 282, 292, 355
MslI	CAYNNNNRTG	1 cut(s)	187
MspI	CCGG	2 cut(s)	348, 399
MspR9I	CCNGG	1 cut(s)	400
MwoI	GCNNNNNNNGC	1 cut(s)	179
NciI	CCSGG	1 cut(s)	400
NdeII	GATC	1 cut(s)	15
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	2 cut(s)	295, 296
NspV	TTCGAA	1 cut(s)	318
PaeR7I	CTCGAG	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	3 cut(s)	6, 9, 172
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PpuMI	RGGWCCY	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	295, 296
PspPI	GGNCC	3 cut(s)	294, 350, 401
PspPPI	RGGWCCY	1 cut(s)	294
PspXI	VCTCGAGB	1 cut(s)	307
PstI	CTGCAG	1 cut(s)	388
RseI	CAYNNNNRTG	1 cut(s)	187
SatI	GCNGC	3 cut(s)	5, 8, 171
Sau3AI	GATC	1 cut(s)	15
Sau96I	GGNCC	3 cut(s)	294, 350, 401
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	400
SetI	ASST	5 cut(s)	106, 135, 150, 234, 381
SfaNI	GCATC	2 cut(s)	261, 361
SfcI	CTRYAG	1 cut(s)	384
Sfr274I	CTCGAG	1 cut(s)	307
SfuI	TTCGAA	1 cut(s)	318
SinI	GGWCC	2 cut(s)	294, 350
SlaI	CTCGAG	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	187
SmlI	CTYRAG	2 cut(s)	110, 307
SmoI	CTYRAG	2 cut(s)	110, 307
Sse9I	AATT	1 cut(s)	208
SsiI	CCGC	2 cut(s)	170, 298
StyD4I	CCNGG	1 cut(s)	398
StyI	CCWWGG	2 cut(s)	129, 228
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	3 cut(s)	123, 308, 318
TasI	AATT	1 cut(s)	208
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	320
TscAI	CASTG	1 cut(s)	393
TseI	GCWGC	2 cut(s)	4, 7
TspDTI	ATGAA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	393
VpaK11BI	GGWCC	2 cut(s)	294, 350
XapI	RAATTY	1 cut(s)	208
XhoI	CTCGAG	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.