Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009775.1

Orthogroup ID

OG0006944

Physical Location & Seq

Genomic Coordinates Forward (+)

44376 .. 45932

Gene Structure 1557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009775.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

atggaactagaagcgctgagagtcagcctcaccaaggataccgagactaccagaggaagagaattgcaccacaatctcctgaagatacttcagaagatattgctaattgggatgccaatccgttacagttacaaggatcttaaaactgcgactaacaacttctcaaataagcttgggcaaggacgttttggctcagtttacttgggggttctcccagatggaactcgacttgctgtgaagaagttgaaagccaataaatggcagggagagaaagattttcaagctgaagttagaatcagtggcagtatccatcatctgcacttggtcaggctccggggcttctgtgcaaaaggaagcaatcgacttcttgcctacgagtacatggcaaatggatcccttgacaaatggattttcagggaaaaaaatgaagagttcgtattggattgggggacaagattcaacatagcagtgggtattgccaaaggaatagcttatctccatgaagattgtgatttgaagattattcactgtgacataaagcctcaaaacgtgctccttgacgacaattacaatgcgaaactcacagattttggtctggcagtgctgatgaccagggagcaaagccacttcgaaccagaagtagtgcgaggaactatgggatgcattgccccagagtggttctataaaaatttaggtggtgtttcggagaaaagtgacgtgtactgctacggaatgctgctgctggagatcattggcggaagaaggaacctgaacgcatctgtatcctgctctgctgaaatttattttccatcgtatgcctcccagatgttggaagaagggaaactcaaggacatcttcgaccgcaagatgaggatagatgacgttgacgagagggtttctactgcggttatggtagcattgtggtgtatacagttagacatgactttgaggccaccaatgaccaaggttgtccaaatgcttcaaggcatctgctctgttcctcagcctccaattccgcggctttatccaactgaattagccgagggggggacttcctccggttcatcggactgcaacagcgttgtctacctttctgcagagagcgcctttcctggccaagataacatttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

377

Amino Acids

42.42

Weight (kDa)

7.06

Isoelectric Point (pI)

33.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006944)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30110
malus_domestica	MD15G1122900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0367661 RchiOBHm_Chr6g0297951
rosa_laevigata	RLG00000011549 RLG00000027270 RLG00000027276
rosa_multiflora	Rmu_co8343541.1_g000001 Rmu_sc0001091.1_g000014 Rmu_sc0008470.1_g000008 Rmu_sc0009775.1_g000007 Rmu_sc0027455.1_g000002
rosa_roxburghii	Rroxscaffold_4G00289420 Rroxscaffold_5G00333540 Rroxscaffold_5G00333550
rosa_rugosa	Rorug01G0336000 Rorug01G0336100 Rorug03G0303500 Rorug06G0277000
rosa_samantha	Rh1AG343100 Rh1BG304200 Rh1DG336500 Rh4BG005400 Rh6BG395800 Rh6BG396000
rosa_wichuraiana	Rw1G030530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	258, 829
AccI	GTMKAC	2 cut(s)	928, 1086
AccII	CGCG	1 cut(s)	1018
AciI	CCGC	5 cut(s)	756, 862, 905, 1016, 1018
AclWI	GGATC	3 cut(s)	144, 387, 400
AcoI	YGGCCR	1 cut(s)	1114
AcsI	RAATTY	2 cut(s)	688, 798
AcuI	CTGAAG	3 cut(s)	74, 101, 306
AfaI	GTAC	2 cut(s)	380, 722
AfeI	AGCGCT	1 cut(s)	15
AfiI	CCNNNNNNNGG	5 cut(s)	34, 258, 675, 829, 1047
AflIII	ACRYGT	1 cut(s)	717
AgsI	TTSAA	5 cut(s)	247, 281, 460, 517, 983
AjiI	CACGTC	1 cut(s)	718
AjnI	CCWGG	2 cut(s)	611, 1111
AluBI	AGCT	3 cut(s)	172, 284, 491
AluI	AGCT	3 cut(s)	172, 284, 491
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	3 cut(s)	144, 387, 400
Aor51HI	AGCGCT	1 cut(s)	15
AoxI	GGCC	2 cut(s)	950, 1114
ApeKI	GCWGC	2 cut(s)	736, 739
ApoI	RAATTY	2 cut(s)	688, 798
AspLEI	GCGC	2 cut(s)	16, 1106
AsuC2I	CCSGG	1 cut(s)	335
AsuHPI	GGTGA	1 cut(s)	22
AsuII	TTCGAA	1 cut(s)	630
BalI	TGGCCA	1 cut(s)	1116
BamHI	GGATCC	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	555
BbvCI	CCTCAGC	1 cut(s)	1002
BbvI	GCAGC	2 cut(s)	723, 726
BccI	CCATC	3 cut(s)	212, 318, 817
BciT130I	CCWGG	2 cut(s)	613, 1113
BciVI	GTATCC	3 cut(s)	31, 317, 793
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	1 cut(s)	8
BfmI	CTRYAG	1 cut(s)	1095
BfoI	RGCGCY	2 cut(s)	17, 1107
BfuI	GTATCC	3 cut(s)	31, 317, 793
BisI	GCNGC	3 cut(s)	737, 740, 1019
BlsI	GCNGC	3 cut(s)	738, 741, 1020
Bme1390I	CCNGG	3 cut(s)	335, 613, 1113
BmgBI	CACGTC	1 cut(s)	718
BmiI	GGNNCC	3 cut(s)	332, 394, 767
BmrFI	CCNGG	3 cut(s)	335, 613, 1113
BmsI	GCATC	4 cut(s)	102, 650, 785, 996
BplI	GAGNNNNNCTC	2 cut(s)	12, 44
BpmI	CTGGAG	1 cut(s)	764
Bpu10I	CCTNAGC	1 cut(s)	1002
Bpu14I	TTCGAA	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	830
BpuMI	CCSGG	1 cut(s)	335
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	6 cut(s)	33, 334, 612, 963, 1016, 1041
BsaWI	WCCGGW	1 cut(s)	1058
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 258, 675, 829, 1047
Bse3DI	GCAATG	1 cut(s)	663
Bse8I	GATNNNNATC	1 cut(s)	116
BseBI	CCWGG	2 cut(s)	613, 1113
BseDI	CCNNGG	6 cut(s)	33, 334, 612, 963, 1016, 1041
BseGI	GGATG	2 cut(s)	117, 665
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	5 cut(s)	34, 258, 675, 829, 1047
BseMI	GCAATG	1 cut(s)	663
BseMII	CTCAG	3 cut(s)	8, 207, 1016
BseXI	GCAGC	2 cut(s)	723, 726
BsgI	GTGCAG	1 cut(s)	302
Bsh1236I	CGCG	1 cut(s)	1018
Bsh1285I	CGRYCG	1 cut(s)	862
BshFI	GGCC	2 cut(s)	952, 1116
BsiEI	CGRYCG	1 cut(s)	862
BsiHKAI	GWGCWC	1 cut(s)	555
BsiSI	CCGG	2 cut(s)	334, 1059
BslFI	GGGAC	2 cut(s)	463, 1063
BslI	CCNNNNNNNGG	5 cut(s)	34, 258, 675, 829, 1047
BsmAI	GTCTC	1 cut(s)	38
BsmFI	GGGAC	2 cut(s)	463, 1063
BsmI	GAATGC	1 cut(s)	738
BsnI	GGCC	2 cut(s)	952, 1116
Bsp119I	TTCGAA	1 cut(s)	630
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp143I	GATC	3 cut(s)	136, 392, 747
BspACI	CCGC	5 cut(s)	756, 862, 905, 1016, 1018
BspANI	GGCC	2 cut(s)	952, 1116
BspCNI	CTCAG	3 cut(s)	9, 206, 1015
BspFNI	CGCG	1 cut(s)	1018
BspLI	GGNNCC	3 cut(s)	332, 394, 767
BspMAI	CTGCAG	1 cut(s)	1099
BspPI	GGATC	3 cut(s)	144, 387, 400
BspT104I	TTCGAA	1 cut(s)	630
BsrDI	GCAATG	1 cut(s)	663
BssECI	CCNNGG	6 cut(s)	33, 334, 612, 963, 1016, 1041
BssMI	GATC	3 cut(s)	136, 392, 747
BssNAI	GTATAC	1 cut(s)	929
BssT1I	CCWWGG	2 cut(s)	33, 963
Bst1107I	GTATAC	1 cut(s)	929
Bst2UI	CCWGG	2 cut(s)	613, 1113
Bst4CI	ACNGT	3 cut(s)	128, 530, 933
Bst6I	CTCTTC	2 cut(s)	52, 423
BstBI	TTCGAA	1 cut(s)	630
BstDEI	CTNAG	3 cut(s)	17, 193, 1002
BstDSI	CCRYGG	1 cut(s)	1016
BstENI	CCTNNNNNAGG	1 cut(s)	32
BstF5I	GGATG	2 cut(s)	117, 665
BstFNI	CGCG	1 cut(s)	1018
BstH2I	RGCGCY	2 cut(s)	17, 1107
BstHHI	GCGC	2 cut(s)	16, 1106
BstKTI	GATC	3 cut(s)	139, 395, 750
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	3 cut(s)	136, 392, 747
BstMCI	CGRYCG	1 cut(s)	862
BstMWI	GCNNNNNNNGC	1 cut(s)	1103
BstNI	CCWGG	2 cut(s)	613, 1113
BstSCI	CCNGG	3 cut(s)	333, 611, 1111
BstSFI	CTRYAG	1 cut(s)	1095
BstUI	CGCG	1 cut(s)	1018
BstV1I	GCAGC	2 cut(s)	723, 726
BstX2I	RGATCY	2 cut(s)	136, 392
BstYI	RGATCY	2 cut(s)	136, 392
BstZ17I	GTATAC	1 cut(s)	929
BsuI	GTATCC	3 cut(s)	31, 317, 793
BsuRI	GGCC	2 cut(s)	952, 1116
BtgI	CCRYGG	1 cut(s)	1016
BtrI	CACGTC	1 cut(s)	718
BtsCI	GGATG	2 cut(s)	117, 665
BtsI	GCAGTG	2 cut(s)	474, 606
BtsIMutI	CAGTG	4 cut(s)	304, 474, 526, 606
CfoI	GCGC	2 cut(s)	16, 1106
Cfr42I	CCGCGG	1 cut(s)	1019
Csp6I	GTAC	2 cut(s)	379, 721
CviAII	CATG	3 cut(s)	382, 500, 940
CviQI	GTAC	2 cut(s)	379, 721
DdeI	CTNAG	3 cut(s)	17, 193, 1002
DpnI	GATC	3 cut(s)	138, 394, 749
DpnII	GATC	3 cut(s)	136, 392, 747
EaeI	YGGCCR	1 cut(s)	1114
Eam1104I	CTCTTC	2 cut(s)	52, 423
EarI	CTCTTC	2 cut(s)	52, 423
EciI	GGCGGA	1 cut(s)	771
Eco130I	CCWWGG	2 cut(s)	33, 963
Eco47III	AGCGCT	1 cut(s)	15
Eco57I	CTGAAG	3 cut(s)	74, 101, 306
EcoNI	CCTNNNNNAGG	1 cut(s)	32
EcoRII	CCWGG	2 cut(s)	611, 1111
EcoT14I	CCWWGG	2 cut(s)	33, 963
EcoT22I	ATGCAT	1 cut(s)	665
ErhI	CCWWGG	2 cut(s)	33, 963
FaeI	CATG	3 cut(s)	385, 503, 943
FalI	AAGNNNNNCTT	2 cut(s)	839, 871
FaqI	GGGAC	2 cut(s)	463, 1063
FatI	CATG	3 cut(s)	381, 499, 939
FblI	GTMKAC	2 cut(s)	928, 1086
Fnu4HI	GCNGC	3 cut(s)	737, 740, 1019
FokI	GGATG	2 cut(s)	124, 672
Fsp4HI	GCNGC	3 cut(s)	737, 740, 1019
FspBI	CTAG	1 cut(s)	8
GlaI	GCGC	2 cut(s)	15, 1105
GluI	GCNGC	3 cut(s)	737, 740, 1019
GsuI	CTGGAG	1 cut(s)	764
HaeII	RGCGCY	2 cut(s)	17, 1107
HaeIII	GGCC	2 cut(s)	952, 1116
HapII	CCGG	2 cut(s)	334, 1059
HhaI	GCGC	2 cut(s)	16, 1106
Hin1II	CATG	3 cut(s)	385, 503, 943
Hin6I	GCGC	2 cut(s)	14, 1104
HinP1I	GCGC	2 cut(s)	14, 1104
HincII	GTYRAC	1 cut(s)	886
HindII	GTYRAC	1 cut(s)	886
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	3 cut(s)	21, 294, 456
HpaII	CCGG	2 cut(s)	334, 1059
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	5 cut(s)	199, 721, 886, 929, 1087
Hpy188I	TCNGA	3 cut(s)	93, 706, 1069
Hpy188III	TCNNGA	1 cut(s)	79
Hpy8I	GTNNAC	5 cut(s)	199, 721, 886, 929, 1087
HpyAV	CCTTC	2 cut(s)	756, 830
HpyCH4III	ACNGT	3 cut(s)	128, 530, 933
HpyCH4IV	ACGT	4 cut(s)	184, 549, 717, 882
HpyCH4V	TGCA	6 cut(s)	67, 319, 347, 663, 1074, 1097
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1103
HpyF3I	CTNAG	3 cut(s)	17, 193, 1002
HpySE526I	ACGT	4 cut(s)	184, 549, 717, 882
Hsp92II	CATG	3 cut(s)	385, 503, 943
HspAI	GCGC	2 cut(s)	14, 1104
KspI	CCGCGG	1 cut(s)	1019
Kzo9I	GATC	3 cut(s)	136, 392, 747
LmnI	GCTCC	3 cut(s)	336, 558, 616
Lsp1109I	GCAGC	2 cut(s)	723, 726
LweI	GCATC	4 cut(s)	102, 650, 785, 996
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	4 cut(s)	184, 549, 717, 882
MaeIII	GTNAC	4 cut(s)	122, 128, 530, 713
MalI	GATC	3 cut(s)	138, 394, 749
MboI	GATC	3 cut(s)	136, 392, 747
MflI	RGATCY	2 cut(s)	136, 392
MhlI	GDGCHC	1 cut(s)	555
MlsI	TGGCCA	1 cut(s)	1116
MluCI	AATT	7 cut(s)	62, 105, 565, 688, 798, 1011, 1034
MluNI	TGGCCA	1 cut(s)	1116
MlyI	GAGTC	1 cut(s)	30
MmeI	TCCRAC	2 cut(s)	810, 1052
Mox20I	TGGCCA	1 cut(s)	1116
Mph1103I	ATGCAT	1 cut(s)	665
MscI	TGGCCA	1 cut(s)	1116
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	2 cut(s)	467, 922
Msp20I	TGGCCA	1 cut(s)	1116
MspA1I	CMGCKG	1 cut(s)	1018
MspI	CCGG	2 cut(s)	334, 1059
MspR9I	CCNGG	3 cut(s)	335, 613, 1113
Mva1269I	GAATGC	1 cut(s)	738
MvaI	CCWGG	2 cut(s)	613, 1113
MvnI	CGCG	1 cut(s)	1018
MwoI	GCNNNNNNNGC	1 cut(s)	1103
NciI	CCSGG	1 cut(s)	335
NdeII	GATC	3 cut(s)	136, 392, 747
NlaIII	CATG	3 cut(s)	385, 503, 943
NlaIV	GGNNCC	3 cut(s)	332, 394, 767
NmeAIII	GCCGAG	1 cut(s)	1066
NmuCI	GTSAC	2 cut(s)	530, 713
NsiI	ATGCAT	1 cut(s)	665
NspV	TTCGAA	1 cut(s)	630
PctI	GAATGC	1 cut(s)	738
PfeI	GAWTC	2 cut(s)	294, 456
PflMI	CCANNNNNTGG	2 cut(s)	258, 829
PkrI	GCNGC	3 cut(s)	738, 741, 1020
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
Psp6I	CCWGG	2 cut(s)	611, 1111
PspGI	CCWGG	2 cut(s)	611, 1111
PspN4I	GGNNCC	3 cut(s)	332, 394, 767
PstI	CTGCAG	1 cut(s)	1099
PsuI	RGATCY	2 cut(s)	136, 392
RsaI	GTAC	2 cut(s)	380, 722
RsaNI	GTAC	2 cut(s)	379, 721
RseI	CAYNNNNRTG	2 cut(s)	467, 922
SacII	CCGCGG	1 cut(s)	1019
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	3 cut(s)	737, 740, 1019
Sau3AI	GATC	3 cut(s)	136, 392, 747
SchI	GAGTC	1 cut(s)	30
ScrFI	CCNGG	3 cut(s)	335, 613, 1113
SduI	GDGCHC	1 cut(s)	555
SfaNI	GCATC	4 cut(s)	102, 650, 785, 996
SfcI	CTRYAG	1 cut(s)	1095
Sfr303I	CCGCGG	1 cut(s)	1019
SfuI	TTCGAA	1 cut(s)	630
SgrBI	CCGCGG	1 cut(s)	1019
SmiMI	CAYNNNNRTG	2 cut(s)	467, 922
SmlI	CTYRAG	1 cut(s)	845
SmoI	CTYRAG	1 cut(s)	845
Sse9I	AATT	7 cut(s)	62, 105, 565, 688, 798, 1011, 1034
SsiI	CCGC	5 cut(s)	756, 862, 905, 1016, 1018
SspMI	CTAG	1 cut(s)	8
StyD4I	CCNGG	3 cut(s)	333, 611, 1111
StyI	CCWWGG	2 cut(s)	33, 963
TaaI	ACNGT	3 cut(s)	128, 530, 933
TaiI	ACGT	4 cut(s)	187, 552, 720, 885
TaqI	TCGA	4 cut(s)	226, 361, 630, 858
TasI	AATT	7 cut(s)	62, 105, 565, 688, 798, 1011, 1034
TatI	WGTACW	2 cut(s)	378, 720
TauI	GCSGC	1 cut(s)	1021
TfiI	GAWTC	2 cut(s)	294, 456
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	4 cut(s)	304, 474, 533, 606
TseFI	GTSAC	2 cut(s)	530, 713
TseI	GCWGC	2 cut(s)	736, 739
Tsp45I	GTSAC	2 cut(s)	530, 713
TspDTI	ATGAA	3 cut(s)	441, 516, 1053
TspGWI	ACGGA	2 cut(s)	110, 744
TspRI	CASTG	4 cut(s)	304, 474, 533, 606
Van91I	CCANNNNNTGG	2 cut(s)	258, 829
XagI	CCTNNNNNAGG	1 cut(s)	32
XapI	RAATTY	2 cut(s)	688, 798
XmiI	GTMKAC	2 cut(s)	928, 1086
XspI	CTAG	1 cut(s)	8
Zsp2I	ATGCAT	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.