Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006944

Physical Location & Seq

Genomic Coordinates Forward (+)

62406708 .. 62407741

Gene Structure 1034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG396000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTTTTCACAACACTCGGAGGAACTCGAGTGGATCACAAACCGTGCTATATCGGAGAAGAGTGATGTGTATAGCTATGGAATGCTGTTGCTAGAGATTATCGGTGGGAGAAAGAACTATGACCAATCAGAAAGTTCTGAAAAATCTCAATTTCCATCCTATGCCTTCAAGATGCTAAATGAAGGCAAAATGAAGGACATTGTCGACTCCAAGCTGAAGATAGATGACGCCGACGAGAGGGTTTCTACGGCGACTATTGTTGCATTGTGGTGTATACAGCAAGACATGTCTTTGAGGCCATCAATGGCCAAGGTTGTCCAAATCTTTGAAGGGGTCTGTCCTGTTCCTCAGCCTCCAACTTCCTCAGCAATGATTTCTTCAACAATGACTTCCTCAGGACCAACATGCTGCTACAGTGGTGCCTATTTTTCTGCAGAGCATCTTTCTGGACCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

152

Amino Acids

16.88

Weight (kDa)

5.01

Isoelectric Point (pI)

49.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	9 - 107	6.4e-07	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	10 - 107	3.5e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006944)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30110
malus_domestica	MD15G1122900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0367661 RchiOBHm_Chr6g0297951
rosa_laevigata	RLG00000011549 RLG00000027270 RLG00000027276
rosa_multiflora	Rmu_co8343541.1_g000001 Rmu_sc0001091.1_g000014 Rmu_sc0008470.1_g000008 Rmu_sc0009775.1_g000007 Rmu_sc0027455.1_g000002
rosa_roxburghii	Rroxscaffold_4G00289420 Rroxscaffold_5G00333540 Rroxscaffold_5G00333550
rosa_rugosa	Rorug01G0336000 Rorug01G0336100 Rorug03G0303500 Rorug06G0277000
rosa_samantha	Rh1AG343100 Rh1BG304200 Rh1DG336500 Rh4BG005400 Rh6BG395800 Rh6BG396000
rosa_wichuraiana	Rw1G030530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	419
AccI	GTMKAC	2 cut(s)	204, 274
AclWI	GGATC	1 cut(s)	41
AcoI	YGGCCR	1 cut(s)	306
AcuI	CTGAAG	1 cut(s)	236
AcyI	GRCGYC	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	237
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	3 cut(s)	169, 329, 381
AluBI	AGCT	2 cut(s)	75, 214
AluI	AGCT	2 cut(s)	75, 214
AlwI	GGATC	1 cut(s)	41
Ama87I	CYCGRG	1 cut(s)	26
AoxI	GGCC	2 cut(s)	296, 306
ApeKI	GCWGC	1 cut(s)	408
AspS9I	GGNCC	2 cut(s)	398, 449
AvaI	CYCGRG	1 cut(s)	26
AvaII	GGWCC	2 cut(s)	398, 449
AxyI	CCTNAGG	1 cut(s)	394
BalI	TGGCCA	1 cut(s)	308
BanI	GGYRCC	1 cut(s)	419
BbvCI	CCTCAGC	2 cut(s)	348, 364
BbvI	GCAGC	1 cut(s)	395
BccI	CCATC	2 cut(s)	163, 307
BceAI	ACGGC	1 cut(s)	264
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	2 cut(s)	412, 432
BisI	GCNGC	1 cut(s)	409
BlsI	GCNGC	1 cut(s)	410
Bme18I	GGWCC	2 cut(s)	398, 449
BmeT110I	CYCGRG	1 cut(s)	26
BmgT120I	GGNCC	2 cut(s)	398, 449
BmiI	GGNNCC	1 cut(s)	421
BmsI	GCATC	2 cut(s)	162, 448
Bpu10I	CCTNAGC	2 cut(s)	348, 364
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse21I	CCTNAGG	1 cut(s)	394
Bse3DI	GCAATG	1 cut(s)	375
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	3 cut(s)	362, 378, 408
BseXI	GCAGC	1 cut(s)	395
BshFI	GGCC	2 cut(s)	298, 308
BshNI	GGYRCC	1 cut(s)	419
BsiHKCI	CYCGRG	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmI	GAATGC	1 cut(s)	87
BsnI	GGCC	2 cut(s)	298, 308
BsoBI	CYCGRG	1 cut(s)	26
Bsp143I	GATC	1 cut(s)	33
BspANI	GGCC	2 cut(s)	298, 308
BspCNI	CTCAG	3 cut(s)	361, 377, 407
BspLI	GGNNCC	1 cut(s)	421
BspMAI	CTGCAG	1 cut(s)	436
BspPI	GGATC	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	419
BsrDI	GCAATG	1 cut(s)	375
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	1 cut(s)	33
BssNAI	GTATAC	1 cut(s)	275
BssNI	GRCGYC	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	309
Bst1107I	GTATAC	1 cut(s)	275
Bst4CI	ACNGT	2 cut(s)	44, 416
Bst6I	CTCTTC	1 cut(s)	53
BstACI	GRCGYC	1 cut(s)	228
BstDEI	CTNAG	3 cut(s)	348, 364, 394
BstF5I	GGATG	1 cut(s)	155
BstKTI	GATC	1 cut(s)	36
BstMBI	GATC	1 cut(s)	33
BstNSI	RCATGY	2 cut(s)	289, 408
BstSFI	CTRYAG	2 cut(s)	412, 432
BstV1I	GCAGC	1 cut(s)	395
BstZ17I	GTATAC	1 cut(s)	275
Bsu36I	CCTNAGG	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	298, 308
BtsCI	GGATG	1 cut(s)	155
BtsIMutI	CAGTG	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	398, 449
CseI	GACGC	1 cut(s)	236
CviAII	CATG	2 cut(s)	286, 405
CviJI	RGCY	5 cut(s)	75, 214, 298, 308, 352
CviKI_1	RGCY	5 cut(s)	75, 214, 298, 308, 352
DdeI	CTNAG	3 cut(s)	348, 364, 394
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	309
Eco47I	GGWCC	2 cut(s)	398, 449
Eco57I	CTGAAG	1 cut(s)	236
Eco81I	CCTNAGG	1 cut(s)	394
Eco88I	CYCGRG	1 cut(s)	26
EcoT14I	CCWWGG	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	2 cut(s)	289, 408
FaiI	YATR	8 cut(s)	50, 72, 78, 120, 162, 275, 287, 406
FatI	CATG	2 cut(s)	285, 404
FblI	GTMKAC	2 cut(s)	204, 274
Fnu4HI	GCNGC	1 cut(s)	409
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	1 cut(s)	409
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	1 cut(s)	409
HaeIII	GGCC	2 cut(s)	298, 308
HgaI	GACGC	1 cut(s)	236
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	2 cut(s)	289, 408
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	1 cut(s)	206
Hpy166II	GTNNAC	2 cut(s)	205, 275
Hpy188I	TCNGA	4 cut(s)	19, 55, 130, 139
Hpy188III	TCNNGA	3 cut(s)	169, 396, 447
Hpy8I	GTNNAC	2 cut(s)	205, 275
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	4 cut(s)	175, 176, 187, 323
HpyCH4III	ACNGT	2 cut(s)	44, 416
HpyCH4V	TGCA	2 cut(s)	263, 434
HpyF3I	CTNAG	3 cut(s)	348, 364, 394
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	289, 408
Kzo9I	GATC	1 cut(s)	33
LpnPI	CCDG	3 cut(s)	354, 381, 432
Lsp1109I	GCAGC	1 cut(s)	395
LweI	GCATC	2 cut(s)	162, 448
MaeI	CTAG	1 cut(s)	92
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MboII	GAAGA	3 cut(s)	70, 229, 369
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	1 cut(s)	149
MluNI	TGGCCA	1 cut(s)	308
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	7 cut(s)	13, 231, 288, 357, 363, 373, 403
Mox20I	TGGCCA	1 cut(s)	308
MscI	TGGCCA	1 cut(s)	308
MslI	CAYNNNNRTG	1 cut(s)	268
Msp20I	TGGCCA	1 cut(s)	308
Mva1269I	GAATGC	1 cut(s)	87
NdeII	GATC	1 cut(s)	33
NlaIII	CATG	2 cut(s)	289, 408
NlaIV	GGNNCC	1 cut(s)	421
NspI	RCATGY	2 cut(s)	289, 408
PaeR7I	CTCGAG	1 cut(s)	26
PciI	ACATGT	1 cut(s)	285
PctI	GAATGC	1 cut(s)	87
PflFI	GACNNNGTC	1 cut(s)	200
PkrI	GCNGC	1 cut(s)	410
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PscI	ACATGT	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	421
PspPI	GGNCC	2 cut(s)	398, 449
PspXI	VCTCGAGB	1 cut(s)	26
PstI	CTGCAG	1 cut(s)	436
PsyI	GACNNNGTC	1 cut(s)	200
RseI	CAYNNNNRTG	1 cut(s)	268
SalI	GTCGAC	1 cut(s)	203
SatI	GCNGC	1 cut(s)	409
Sau3AI	GATC	1 cut(s)	33
Sau96I	GGNCC	2 cut(s)	398, 449
SchI	GAGTC	1 cut(s)	200
SetI	ASST	3 cut(s)	77, 216, 315
SfaNI	GCATC	2 cut(s)	162, 448
SfcI	CTRYAG	2 cut(s)	412, 432
Sfr274I	CTCGAG	1 cut(s)	26
SinI	GGWCC	2 cut(s)	398, 449
SlaI	CTCGAG	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	268
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	1 cut(s)	149
SspMI	CTAG	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	2 cut(s)	44, 416
TaqI	TCGA	2 cut(s)	27, 204
TasI	AATT	1 cut(s)	149
TscAI	CASTG	1 cut(s)	421
TseI	GCWGC	1 cut(s)	408
TspDTI	ATGAA	2 cut(s)	195, 206
TspRI	CASTG	1 cut(s)	421
Tth111I	GACNNNGTC	1 cut(s)	200
VpaK11BI	GGWCC	2 cut(s)	398, 449
XceI	RCATGY	2 cut(s)	289, 408
XhoI	CTCGAG	1 cut(s)	26
XmiI	GTMKAC	2 cut(s)	204, 274
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.