Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006944

Physical Location & Seq

Genomic Coordinates Reverse (-)

10050240 .. 10051708

Gene Structure 1469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00289420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAATGAGGTGGTCACAGCATTAGAGCAGCTTCAGGAATCTGGTGACATGGAGGATTCGGGAATCTCCCAAAATGAGCCTCGCCAAAATCCTCGTGCTAATTCAAGCAATCGCAGGAGAATTACAAGTTACTTGAAGAATTGGAGCTTCAGTATTCAGTTGTTTACTCAGATAAGAAGTAGTAACTTGGTAAATTCTCTTCTCGTGACTATGAGTGGGGGGATTTGCACAAGCGCGAAGGGGTACCTTAATGCTCAACGAGCCAGTTTGGCAGTAGACCCAGTGCATGAAAATGTGACCATCAACAGCAATGTCACCACTGCCCAAGATCCAGTTGAGGAGACGACAATGGATTCAACTACAAATGGGCTCAGTATCTGTGATGCTATCCTTGATTTAATAGTAGGATCAGTGACAAGAGAAAGCCAAAGCGCCCAAAGCCAAATTAGATTGCGAGTCAGTAACAGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

157

Amino Acids

17.15

Weight (kDa)

4.87

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006944)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30110
malus_domestica	MD15G1122900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0367661 RchiOBHm_Chr6g0297951
rosa_laevigata	RLG00000011549 RLG00000027270 RLG00000027276
rosa_multiflora	Rmu_co8343541.1_g000001 Rmu_sc0001091.1_g000014 Rmu_sc0008470.1_g000008 Rmu_sc0009775.1_g000007 Rmu_sc0027455.1_g000002
rosa_roxburghii	Rroxscaffold_4G00289420 Rroxscaffold_5G00333540 Rroxscaffold_5G00333550
rosa_rugosa	Rorug01G0336000 Rorug01G0336100 Rorug03G0303500 Rorug06G0277000
rosa_samantha	Rh1AG343100 Rh1BG304200 Rh1DG336500 Rh4BG005400 Rh6BG395800 Rh6BG396000
rosa_wichuraiana	Rw1G030530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	243
AccB1I	GGYRCC	1 cut(s)	243
AccI	GTMKAC	1 cut(s)	276
AccII	CGCG	1 cut(s)	236
AclWI	GGATC	2 cut(s)	323, 415
AcsI	RAATTY	1 cut(s)	193
AcuI	CTGAAG	2 cut(s)	17, 133
AfaI	GTAC	1 cut(s)	245
AgsI	TTSAA	3 cut(s)	105, 136, 357
AluBI	AGCT	2 cut(s)	31, 147
AluI	AGCT	2 cut(s)	31, 147
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	2 cut(s)	323, 415
AlwNI	CAGNNNCTG	1 cut(s)	378
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	193
Asp718I	GGTACC	1 cut(s)	243
AspLEI	GCGC	2 cut(s)	236, 434
AsuHPI	GGTGA	2 cut(s)	56, 307
BanI	GGYRCC	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	372
BarI	GAAGNNNNNNTAC	2 cut(s)	183, 215
BauI	CACGAG	2 cut(s)	93, 203
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	335
BfoI	RGCGCY	1 cut(s)	435
BglI	GCCNNNNNGGC	1 cut(s)	269
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
BmiI	GGNNCC	1 cut(s)	245
BmrI	ACTGGG	1 cut(s)	275
BmsI	GCATC	1 cut(s)	373
BmuI	ACTGGG	1 cut(s)	275
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bse1I	ACTGG	3 cut(s)	264, 281, 332
Bse3DI	GCAATG	1 cut(s)	316
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	2 cut(s)	182, 385
BseNI	ACTGG	3 cut(s)	264, 281, 332
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	1 cut(s)	40
Bsh1236I	CGCG	1 cut(s)	236
BshNI	GGYRCC	1 cut(s)	243
BsmAI	GTCTC	1 cut(s)	335
BsmBI	CGTCTC	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	2 cut(s)	328, 407
BspCNI	CTCAG	2 cut(s)	181, 384
BspFNI	CGCG	1 cut(s)	236
BspLI	GGNNCC	1 cut(s)	245
BspPI	GGATC	2 cut(s)	323, 415
BspT107I	GGYRCC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	316
BsrI	ACTGG	3 cut(s)	264, 281, 332
BssMI	GATC	2 cut(s)	328, 407
BssSI	CACGAG	2 cut(s)	93, 203
Bst2BI	CACGAG	2 cut(s)	93, 203
Bst4CI	ACNGT	1 cut(s)	467
Bst6I	CTCTTC	1 cut(s)	204
BstDEI	CTNAG	2 cut(s)	168, 371
BstFNI	CGCG	1 cut(s)	236
BstH2I	RGCGCY	1 cut(s)	435
BstHHI	GCGC	2 cut(s)	236, 434
BstKTI	GATC	2 cut(s)	331, 410
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	2 cut(s)	328, 407
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 269, 438
BstUI	CGCG	1 cut(s)	236
BstV1I	GCAGC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	4 cut(s)	288, 318, 417, 472
CaiI	CAGNNNCTG	1 cut(s)	378
CfoI	GCGC	2 cut(s)	236, 434
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	2 cut(s)	49, 287
CviJI	RGCY	7 cut(s)	31, 79, 147, 263, 370, 426, 441
CviKI_1	RGCY	7 cut(s)	31, 79, 147, 263, 370, 426, 441
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	2 cut(s)	168, 371
DpnI	GATC	2 cut(s)	330, 409
DpnII	GATC	2 cut(s)	328, 407
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	372
Eco57I	CTGAAG	2 cut(s)	17, 133
EcoT38I	GRGCYC	1 cut(s)	372
Esp3I	CGTCTC	1 cut(s)	335
FaeI	CATG	2 cut(s)	52, 290
FaiI	YATR	3 cut(s)	50, 212, 288
FatI	CATG	2 cut(s)	48, 286
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	372
Fsp4HI	GCNGC	1 cut(s)	29
GlaI	GCGC	2 cut(s)	235, 433
GluI	GCNGC	1 cut(s)	29
HaeII	RGCGCY	1 cut(s)	435
HhaI	GCGC	2 cut(s)	236, 434
Hin1II	CATG	2 cut(s)	52, 290
Hin6I	GCGC	2 cut(s)	234, 432
HinP1I	GCGC	2 cut(s)	234, 432
HinfI	GANTC	5 cut(s)	38, 56, 63, 353, 456
HphI	GGTGA	2 cut(s)	56, 307
Hpy166II	GTNNAC	2 cut(s)	165, 277
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	3 cut(s)	35, 60, 205
Hpy8I	GTNNAC	2 cut(s)	165, 277
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	1 cut(s)	467
HpyCH4V	TGCA	2 cut(s)	228, 286
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 269, 438
HpyF3I	CTNAG	2 cut(s)	168, 371
Hsp92II	CATG	2 cut(s)	52, 290
HspAI	GCGC	2 cut(s)	234, 432
KpnI	GGTACC	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	328, 407
LmnI	GCTCC	1 cut(s)	144
LpnPI	CCDG	6 cut(s)	20, 27, 100, 277, 294, 345
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	1 cut(s)	373
MaeIII	GTNAC	9 cut(s)	13, 44, 128, 182, 205, 295, 313, 412, 461
MalI	GATC	2 cut(s)	330, 409
MboI	GATC	2 cut(s)	328, 407
MboII	GAAGA	2 cut(s)	148, 191
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	5 cut(s)	100, 120, 139, 193, 444
MlyI	GAGTC	1 cut(s)	465
MnlI	CCTC	4 cut(s)	46, 90, 102, 331
MseI	TTAA	2 cut(s)	249, 398
MslI	CAYNNNNRTG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	236
MwoI	GCNNNNNNNGC	3 cut(s)	260, 269, 438
NdeII	GATC	2 cut(s)	328, 407
NlaIII	CATG	2 cut(s)	52, 290
NlaIV	GGNNCC	1 cut(s)	245
NmuCI	GTSAC	6 cut(s)	13, 44, 205, 295, 313, 412
PfeI	GAWTC	4 cut(s)	38, 56, 63, 353
PkrI	GCNGC	1 cut(s)	30
PleI	GAGTC	1 cut(s)	464
PpsI	GAGTC	1 cut(s)	464
PspN4I	GGNNCC	1 cut(s)	245
PstNI	CAGNNNCTG	1 cut(s)	378
PsuI	RGATCY	1 cut(s)	328
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	249, 398
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	2 cut(s)	328, 407
SchI	GAGTC	1 cut(s)	465
SduI	GDGCHC	1 cut(s)	372
SetI	ASST	4 cut(s)	12, 33, 149, 249
SfaNI	GCATC	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	291
Sse9I	AATT	5 cut(s)	100, 120, 139, 193, 444
TaaI	ACNGT	1 cut(s)	467
TasI	AATT	5 cut(s)	100, 120, 139, 193, 444
TfiI	GAWTC	4 cut(s)	38, 56, 63, 353
Tru1I	TTAA	2 cut(s)	249, 398
Tru9I	TTAA	2 cut(s)	249, 398
TscAI	CASTG	4 cut(s)	288, 325, 417, 472
TseFI	GTSAC	6 cut(s)	13, 44, 205, 295, 313, 412
TseI	GCWGC	1 cut(s)	28
Tsp45I	GTSAC	6 cut(s)	13, 44, 205, 295, 313, 412
TspDTI	ATGAA	2 cut(s)	17, 303
TspRI	CASTG	4 cut(s)	288, 325, 417, 472
XapI	RAATTY	1 cut(s)	193
XmiI	GTMKAC	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.