Rh1DG336500
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0006944
Physical Location & Seq
Forward (+)
56195055 .. 56196817
1763 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG336500.1

Sequence Viewer

Length: 390 bp
ATGAATGGGGGGATTCGCACAAGCGTGAAGGGATACCTTAATGCTCAACGAGCCAGTTTGGCAGTAGACCCAGTGCATGAAAATGTGACCATCAACAGAAATGTCACCACCGCCCAAGATCCAGTTGAGGAGGCGACAATGGATTCAACTAAATATGGGCTCATTATCTGTGACAGTAACATTCCTTGCTTCCCAGTTTTGAGCTCTACTGCAAAGAACTTGGCTTCACATGGAACTAGAAGCGCTGAGAGTCCGCCTCACCAAGGACACCAACACTACCAGAGGAAGAGAAATGCACCAAAATCTCCTGACGATACTTCAGAAGATAATTATATATCTCTTGGAAAAGCTAATTGGGATGCCAATCCGTTACAGTTACAAGGATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

129

Amino Acids

14.02

Weight (kDa)

6.49

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 66
AciI CCGC 2 cut(s) 111, 254
AclWI GGATC 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 303
AfeI AGCGCT 1 cut(s) 244
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 1 cut(s) 147
AjuI GAANNNNNNNTTGG 2 cut(s) 337, 369
AleI CACNNNNGTG 1 cut(s) 23
AluBI AGCT 2 cut(s) 204, 350
AluI AGCT 2 cut(s) 204, 350
Alw21I GWGCWC 1 cut(s) 206
AlwI GGATC 1 cut(s) 113
Aor51HI AGCGCT 1 cut(s) 244
AspLEI GCGC 1 cut(s) 245
AsuHPI GGTGA 2 cut(s) 97, 251
BanII GRGCYC 2 cut(s) 162, 206
Bbv12I GWGCWC 1 cut(s) 206
BccI CCATC 1 cut(s) 98
BciVI GTATCC 1 cut(s) 26
BfaI CTAG 1 cut(s) 237
BfoI RGCGCY 1 cut(s) 246
BfuI GTATCC 1 cut(s) 26
BglI GCCNNNNNGGC 1 cut(s) 59
BmrI ACTGGG 2 cut(s) 65, 188
BmsI GCATC 1 cut(s) 349
BmuI ACTGGG 2 cut(s) 65, 188
BplI GAGNNNNNCTC 2 cut(s) 241, 273
BsaBI GATNNNNATC 1 cut(s) 363
BsaJI CCNNGG 1 cut(s) 262
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 4 cut(s) 54, 71, 122, 194
Bse8I GATNNNNATC 1 cut(s) 363
BseDI CCNNGG 1 cut(s) 262
BseGI GGATG 1 cut(s) 364
BseJI GATNNNNATC 1 cut(s) 363
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 4 cut(s) 54, 71, 122, 194
BseRI GAGGAG 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 263
Bsp1286I GDGCHC 2 cut(s) 162, 206
Bsp143I GATC 2 cut(s) 118, 383
BspACI CCGC 2 cut(s) 111, 254
BspCNI CTCAG 1 cut(s) 238
BspPI GGATC 1 cut(s) 113
BsrI ACTGG 4 cut(s) 54, 71, 122, 194
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 2 cut(s) 118, 383
BssT1I CCWWGG 1 cut(s) 262
Bst4CI ACNGT 2 cut(s) 176, 375
Bst6I CTCTTC 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 246
BstENI CCTNNNNNAGG 1 cut(s) 261
BstF5I GGATG 1 cut(s) 364
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 2 cut(s) 121, 386
BstMBI GATC 2 cut(s) 118, 383
BstMWI GCNNNNNNNGC 2 cut(s) 50, 59
BstX2I RGATCY 2 cut(s) 118, 383
BstYI RGATCY 2 cut(s) 118, 383
BsuI GTATCC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 364
BtsIMutI CAGTG 1 cut(s) 78
CfoI GCGC 1 cut(s) 245
CviAII CATG 2 cut(s) 77, 230
CviJI RGCY 5 cut(s) 53, 160, 204, 224, 350
CviKI_1 RGCY 5 cut(s) 53, 160, 204, 224, 350
DdeI CTNAG 1 cut(s) 246
DpnI GATC 2 cut(s) 120, 385
DpnII GATC 2 cut(s) 118, 383
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
EciI GGCGGA 1 cut(s) 243
Ecl136II GAGCTC 1 cut(s) 204
Eco130I CCWWGG 1 cut(s) 262
Eco24I GRGCYC 2 cut(s) 162, 206
Eco47III AGCGCT 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 303
EcoICRI GAGCTC 1 cut(s) 204
EcoNI CCTNNNNNAGG 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 262
EcoT38I GRGCYC 2 cut(s) 162, 206
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 2 cut(s) 80, 233
FaiI YATR 5 cut(s) 78, 156, 231, 333, 335
FatI CATG 2 cut(s) 76, 229
FblI GTMKAC 1 cut(s) 66
FokI GGATG 1 cut(s) 371
FriOI GRGCYC 2 cut(s) 162, 206
FspBI CTAG 1 cut(s) 237
GlaI GCGC 1 cut(s) 244
HaeII RGCGCY 1 cut(s) 246
HhaI GCGC 1 cut(s) 245
Hin1II CATG 2 cut(s) 80, 233
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HinfI GANTC 3 cut(s) 13, 143, 250
HphI GGTGA 2 cut(s) 97, 251
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 1 cut(s) 308
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 2 cut(s) 176, 375
HpyCH4V TGCA 3 cut(s) 76, 212, 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 59
HpyF3I CTNAG 1 cut(s) 246
Hsp92II CATG 2 cut(s) 80, 233
HspAI GCGC 1 cut(s) 243
Kzo9I GATC 2 cut(s) 118, 383
LpnPI CCDG 6 cut(s) 67, 84, 135, 207, 293, 321
LweI GCATC 1 cut(s) 349
MaeI CTAG 1 cut(s) 237
MaeIII GTNAC 6 cut(s) 85, 103, 170, 176, 369, 375
MalI GATC 2 cut(s) 120, 385
MboI GATC 2 cut(s) 118, 383
MboII GAAGA 2 cut(s) 298, 335
MflI RGATCY 2 cut(s) 118, 383
MhlI GDGCHC 2 cut(s) 162, 206
MluCI AATT 2 cut(s) 328, 352
MlyI GAGTC 1 cut(s) 259
MnlI CCTC 4 cut(s) 121, 124, 267, 276
MseI TTAA 2 cut(s) 39, 388
MslI CAYNNNNRTG 2 cut(s) 23, 81
MwoI GCNNNNNNNGC 2 cut(s) 50, 59
NdeII GATC 2 cut(s) 118, 383
NlaIII CATG 2 cut(s) 80, 233
NmuCI GTSAC 3 cut(s) 85, 103, 170
OliI CACNNNNGTG 1 cut(s) 23
PfeI GAWTC 2 cut(s) 13, 143
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 206
PsuI RGATCY 2 cut(s) 118, 383
RseI CAYNNNNRTG 2 cut(s) 23, 81
SacI GAGCTC 1 cut(s) 206
SaqAI TTAA 2 cut(s) 39, 388
Sau3AI GATC 2 cut(s) 118, 383
SchI GAGTC 1 cut(s) 259
SduI GDGCHC 2 cut(s) 162, 206
SetI ASST 3 cut(s) 39, 206, 352
SfaNI GCATC 1 cut(s) 349
SmiMI CAYNNNNRTG 2 cut(s) 23, 81
Sse9I AATT 2 cut(s) 328, 352
SsiI CCGC 2 cut(s) 111, 254
SspMI CTAG 1 cut(s) 237
SstI GAGCTC 1 cut(s) 206
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 2 cut(s) 176, 375
TasI AATT 2 cut(s) 328, 352
TfiI GAWTC 2 cut(s) 13, 143
Tru1I TTAA 2 cut(s) 39, 388
Tru9I TTAA 2 cut(s) 39, 388
TscAI CASTG 1 cut(s) 78
TseFI GTSAC 3 cut(s) 85, 103, 170
Tsp45I GTSAC 3 cut(s) 85, 103, 170
TspDTI ATGAA 2 cut(s) 17, 93
TspGWI ACGGA 1 cut(s) 357
TspRI CASTG 1 cut(s) 78
XagI CCTNNNNNAGG 1 cut(s) 261
XmiI GTMKAC 1 cut(s) 66
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.