Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001554

Physical Location & Seq

Genomic Coordinates Forward (+)

28915643 .. 28916386

Gene Structure 744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g36810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGATCTTCCATAGAGGAATAATACAGATTCTTCTCTACTTGGCTCAATGGATTTTCCTTGCTTGCTTTGCCTCTGGTGCTTGTGACCAGGTGGATCGAGACGCTCTCCTGTCCTTGACCTTCAAGGTATCATCATCTTCCTCACCGCCGTTGAATTGGTCTGATTCAACTGACTGTTGCTATTGGGAGGGAGTAACTTGCAACCAAGATGATGATCATCAACGTATCGTAGCTCTATTGCTGCCTGGGAGAGGGCTAAGTGGTGTAATCTCTCCGTCTATCACCAACCTCACCTGTCTCAGTTACCTCAATCTCAGCAACAACAGCTTTGGTGGAGATATCCCTGTTGAGATTGGGGAGTTGAAGTTTATTTATGTGTTGGATCTCAGTCATAACAACTTGTATGGAAGAATCCCAGATCAAGTTTCAGAACTCACCAACTTAGAGAGACTGGATCTCTCTTATAACCATCTACATGGTAAAATCCCTGCTTCTCTTAAAGCTCTGCATCACTTGTCTTTCTTTAGTGTGGCATTCAATGATATCCAAGGAGTTGTGCCATCTTCTCCAACGCATGGAATAAACTTCTCGGATTGGGTTGACAATCTCTTGTTTGATTTTCTTATTGGGGTTGTGGCATTCATAATTCAAAAGATTGTTGTAGGATGTGTGTTTAAAGAAAAATTTAGAGCAAGTTCTGCAACAGCAACCGTAACAGATGTTAATTTGTGGACCATCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001653 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006885 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032502 GO:0032989 GO:0036211 GO:0038023 GO:0040007 GO:0042592 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045851 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051716 GO:0055067 GO:0055080 GO:0060089 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0098771 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

248

Amino Acids

27.34

Weight (kDa)

5.18

Isoelectric Point (pI)

23.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	31 - 68	1.7e-08	Leucine rich repeat N-terminal domain
LRR_14	PF23598	93 - 177	6e-11	Leucine-rich repeat region
LRR_8	PF13855	125 - 182	3.6e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17250 AT1G72300
fragaria_vesca	FvH4_6g35570 FvH4_6g35570 FvH4_6g35570 FvH4_6g36780 FvH4_6g36780 FvH4_6g36790 FvH4_6g36810
malus_domestica	MD02G1111300.v1.1 MD09G1166700.v1.1 MD09G1166900.v1.1 MD09G1171000.v1.1 MD17G1155900.v1.1 MD17G1156200.v1.1
prunus_persica	Prupe.3G024400_v2.0.a1 Prupe.3G024600_v2.0.a1 Prupe.3G024700_v2.0.a1 Prupe.3G029500_v2.0.a1
pyrus_communis	pycom09g08450 pycom17g14870 pycom17g14920
rosa_chinensis	RchiOBHm_Chr2g0147291 RchiOBHm_Chr2g0149181 RchiOBHm_Chr2g0149201
rosa_laevigata	RLG00000020249 RLG00000020378 RLG00000020379 RLG00000020380 RLG00000020381 RLG00000020382
rosa_multiflora	Rmu_co8376871.1_g000001 Rmu_sc0001615.1_g000001 Rmu_sc0001615.1_g000002 Rmu_sc0001880.1_g000001 Rmu_sc0008040.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098330 Rroxscaffold_2G00098340 Rroxscaffold_2G00099610
rosa_rugosa	Rorug02G0399000 Rorug02G0409500 Rorug02G0409600 Rorug02G0409700
rosa_samantha	Rh2AG456100 Rh2BG468800 Rh2CG443700 Rh2DG478100
rosa_wichuraiana	Rw2G037320 Rw2G038220 Rw2G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	465
AccB7I	CCANNNNNTGG	1 cut(s)	575
AciI	CCGC	1 cut(s)	146
AclWI	GGATC	3 cut(s)	102, 390, 462
AcsI	RAATTY	1 cut(s)	683
AfiI	CCNNNNNNNGG	2 cut(s)	251, 575
AgsI	TTSAA	6 cut(s)	124, 154, 168, 364, 538, 650
AjnI	CCWGG	2 cut(s)	87, 244
AluBI	AGCT	3 cut(s)	233, 327, 503
AluI	AGCT	3 cut(s)	233, 327, 503
Alw26I	GTCTC	3 cut(s)	93, 302, 442
AlwI	GGATC	3 cut(s)	102, 390, 462
ApeKI	GCWGC	1 cut(s)	241
ApoI	RAATTY	1 cut(s)	683
AspS9I	GGNCC	1 cut(s)	732
AsuHPI	GGTGA	4 cut(s)	135, 274, 283, 427
AvaII	GGWCC	1 cut(s)	732
BbvI	GCAGC	1 cut(s)	228
BccI	CCATC	3 cut(s)	477, 568, 743
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	2 cut(s)	89, 246
BclI	TGATCA	1 cut(s)	214
BcoDI	GTCTC	3 cut(s)	93, 302, 442
BisI	GCNGC	1 cut(s)	242
BlsI	GCNGC	1 cut(s)	243
Bme1390I	CCNGG	2 cut(s)	89, 246
Bme18I	GGWCC	1 cut(s)	732
BmgT120I	GGNCC	1 cut(s)	732
BmrFI	CCNGG	2 cut(s)	89, 246
BmsI	GCATC	1 cut(s)	517
BplI	GAGNNNNNCTC	2 cut(s)	90, 122
BsaBI	GATNNNNATC	2 cut(s)	213, 216
BsaJI	CCNNGG	2 cut(s)	245, 547
BsaXI	ACNNNNNCTCC	2 cut(s)	350, 380
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 575
Bse1I	ACTGG	1 cut(s)	456
Bse8I	GATNNNNATC	2 cut(s)	213, 216
BseBI	CCWGG	2 cut(s)	89, 246
BseDI	CCNNGG	2 cut(s)	245, 547
BseGI	GGATG	2 cut(s)	671, 735
BseJI	GATNNNNATC	2 cut(s)	213, 216
BseLI	CCNNNNNNNGG	2 cut(s)	251, 575
BseMII	CTCAG	3 cut(s)	313, 328, 400
BseNI	ACTGG	1 cut(s)	456
BseXI	GCAGC	1 cut(s)	228
BslI	CCNNNNNNNGG	2 cut(s)	251, 575
BsmAI	GTCTC	3 cut(s)	93, 302, 442
BsmBI	CGTCTC	1 cut(s)	93
BsmI	GAATGC	2 cut(s)	533, 638
Bsp143I	GATC	6 cut(s)	3, 94, 214, 382, 418, 454
BspACI	CCGC	1 cut(s)	146
BspCNI	CTCAG	3 cut(s)	312, 327, 399
BspPI	GGATC	3 cut(s)	102, 390, 462
BsrI	ACTGG	1 cut(s)	456
BssECI	CCNNGG	2 cut(s)	245, 547
BssMI	GATC	6 cut(s)	3, 94, 214, 382, 418, 454
BssT1I	CCWWGG	1 cut(s)	547
Bst2UI	CCWGG	2 cut(s)	89, 246
Bst4CI	ACNGT	2 cut(s)	176, 712
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	5 cut(s)	257, 299, 314, 386, 442
BstENI	CCTNNNNNAGG	1 cut(s)	249
BstF5I	GGATG	2 cut(s)	671, 735
BstKTI	GATC	6 cut(s)	6, 97, 217, 385, 421, 457
BstMAI	GTCTC	3 cut(s)	93, 302, 442
BstMBI	GATC	6 cut(s)	3, 94, 214, 382, 418, 454
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 77, 324, 698
BstNI	CCWGG	2 cut(s)	89, 246
BstSCI	CCNGG	2 cut(s)	87, 244
BstV1I	GCAGC	1 cut(s)	228
BstX2I	RGATCY	2 cut(s)	382, 454
BstXI	CCANNNNNNTGG	1 cut(s)	476
BstYI	RGATCY	2 cut(s)	382, 454
BtsCI	GGATG	2 cut(s)	671, 735
Cac8I	GCNNGC	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	732
CseI	GACGC	1 cut(s)	110
CsiI	ACCWGGT	1 cut(s)	87
CviAII	CATG	2 cut(s)	476, 575
CviJI	RGCY	5 cut(s)	44, 233, 256, 327, 503
CviKI_1	RGCY	5 cut(s)	44, 233, 256, 327, 503
DdeI	CTNAG	5 cut(s)	257, 299, 314, 386, 442
DpnI	GATC	6 cut(s)	5, 96, 216, 384, 420, 456
DpnII	GATC	6 cut(s)	3, 94, 214, 382, 418, 454
DraI	TTTAAA	1 cut(s)	676
Eco130I	CCWWGG	1 cut(s)	547
Eco32I	GATATC	2 cut(s)	340, 544
Eco47I	GGWCC	1 cut(s)	732
EcoNI	CCTNNNNNAGG	1 cut(s)	249
EcoRII	CCWGG	2 cut(s)	87, 244
EcoRV	GATATC	2 cut(s)	340, 544
EcoT14I	CCWWGG	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	547
Esp3I	CGTCTC	1 cut(s)	93
FaeI	CATG	2 cut(s)	479, 578
FaiI	YATR	8 cut(s)	12, 375, 393, 405, 465, 477, 576, 644
FatI	CATG	2 cut(s)	475, 574
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	1 cut(s)	242
FokI	GGATG	2 cut(s)	678, 722
Fsp4HI	GCNGC	1 cut(s)	242
GluI	GCNGC	1 cut(s)	242
HgaI	GACGC	1 cut(s)	110
Hin1II	CATG	2 cut(s)	479, 578
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HinfI	GANTC	3 cut(s)	28, 164, 411
HphI	GGTGA	4 cut(s)	135, 274, 283, 427
Hpy166II	GTNNAC	2 cut(s)	601, 732
Hpy188I	TCNGA	3 cut(s)	163, 430, 592
Hpy188III	TCNNGA	1 cut(s)	98
Hpy8I	GTNNAC	2 cut(s)	601, 732
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	2 cut(s)	176, 712
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	3 cut(s)	201, 508, 701
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 77, 324, 698
HpyF3I	CTNAG	5 cut(s)	257, 299, 314, 386, 442
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	2 cut(s)	479, 578
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	6 cut(s)	3, 94, 214, 382, 418, 454
Lsp1109I	GCAGC	1 cut(s)	228
LweI	GCATC	1 cut(s)	517
MabI	ACCWGGT	1 cut(s)	87
MaeII	ACGT	1 cut(s)	223
MaeIII	GTNAC	4 cut(s)	83, 193, 302, 712
MalI	GATC	6 cut(s)	5, 96, 216, 384, 420, 456
MboI	GATC	6 cut(s)	3, 94, 214, 382, 418, 454
MboII	GAAGA	4 cut(s)	23, 129, 420, 555
MflI	RGATCY	2 cut(s)	382, 454
MluCI	AATT	4 cut(s)	154, 645, 683, 724
MmeI	TCCRAC	2 cut(s)	360, 593
MnlI	CCTC	7 cut(s)	8, 82, 151, 181, 245, 299, 317
MseI	TTAA	3 cut(s)	498, 675, 723
MslI	CAYNNNNRTG	1 cut(s)	474
MspR9I	CCNGG	2 cut(s)	89, 246
Mva1269I	GAATGC	2 cut(s)	533, 638
MvaI	CCWGG	2 cut(s)	89, 246
MwoI	GCNNNNNNNGC	4 cut(s)	68, 77, 324, 698
NdeII	GATC	6 cut(s)	3, 94, 214, 382, 418, 454
NlaIII	CATG	2 cut(s)	479, 578
NmuCI	GTSAC	1 cut(s)	83
PctI	GAATGC	2 cut(s)	533, 638
PfeI	GAWTC	3 cut(s)	28, 164, 411
PflMI	CCANNNNNTGG	1 cut(s)	575
PkrI	GCNGC	1 cut(s)	243
PsiI	TTATAA	1 cut(s)	465
Psp6I	CCWGG	2 cut(s)	87, 244
PspGI	CCWGG	2 cut(s)	87, 244
PspPI	GGNCC	1 cut(s)	732
PsuI	RGATCY	2 cut(s)	382, 454
RseI	CAYNNNNRTG	1 cut(s)	474
SaqAI	TTAA	3 cut(s)	498, 675, 723
SatI	GCNGC	1 cut(s)	242
Sau3AI	GATC	6 cut(s)	3, 94, 214, 382, 418, 454
Sau96I	GGNCC	1 cut(s)	732
ScrFI	CCNGG	2 cut(s)	89, 246
SexAI	ACCWGGT	1 cut(s)	87
SfaNI	GCATC	1 cut(s)	517
SinI	GGWCC	1 cut(s)	732
SmiMI	CAYNNNNRTG	1 cut(s)	474
Sse9I	AATT	4 cut(s)	154, 645, 683, 724
SsiI	CCGC	1 cut(s)	146
StyD4I	CCNGG	2 cut(s)	87, 244
StyI	CCWWGG	1 cut(s)	547
TaaI	ACNGT	2 cut(s)	176, 712
TaiI	ACGT	1 cut(s)	226
TaqI	TCGA	1 cut(s)	97
TasI	AATT	4 cut(s)	154, 645, 683, 724
TfiI	GAWTC	3 cut(s)	28, 164, 411
Tru1I	TTAA	3 cut(s)	498, 675, 723
Tru9I	TTAA	3 cut(s)	498, 675, 723
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	1 cut(s)	631
TspGWI	ACGGA	1 cut(s)	264
Van91I	CCANNNNNTGG	1 cut(s)	575
VpaK11BI	GGWCC	1 cut(s)	732
XagI	CCTNNNNNAGG	1 cut(s)	249
XapI	RAATTY	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.