Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001554

Physical Location & Seq

Genomic Coordinates Forward (+)

64422127 .. 64422903

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020379

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGGTGGTTGCAAGTTTCCAGGTCAAGTGCCCACCTGGATAGCCAAGCTTAAAAGCCTTCAAGTCTTGGACCTGGCATTTAACCTTATAACCGGCTCTATTCCAGGTTGGTTGGGTAGTCTACCCAAGCCATTCTACATGGACTTGTCCAATAATCTTCTTACAGGAGGATTCCCTGAGAAGCTCTGCAGGATGCCATCTTTGACATCAAAAGAGGCCGACGATAAAGTGGAAAGAAGTTATCTAGAGTTACCAGTTTCTGTGATGTCCAGAAATGGTACTAATCAGCAATACAATCACTTCTCTCAACTCCCCCCAACACTATATCTTGGTTGGAATAGCCTCAGTGGAAATATCCCTATTGAGATTGGCCAATTGAAGTTTCTTCATGAGTTGGATCTTAGCCATAATAACTTCTCTGGCAGCATCCCAGTTCAGATTTCGAATCTATCTAACCTAGAGAAATTGGATCTCTCCTATAACCATCCATCTGGTGCAATCCCTGCTTCCCTTACAGCTCTGAATTTCCTTTCTTTCTTCAGTATTGCATACAATGATCTTCAGGGTTTTGTACCATCTGAAGGCCAGTTCAGTACTTTTACCATCTCCAGTTTTGAAGGAAATCCACGATTATGTGGCTATCAAACTGCACAGCAATCTTGCTCTCTAAGTCCTCCAAGCCCTCCTGTGTTTGCAGGTACTCAGAGATCTTCCAACAAGATTCTAAGTGCACTCATCTCAGCATTTTCTTGGTTTAAGCATTGTTATTGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001653 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006885 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032502 GO:0032989 GO:0036211 GO:0038023 GO:0040007 GO:0042592 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045851 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051716 GO:0055067 GO:0055080 GO:0060089 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0098771 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

259

Amino Acids

28.47

Weight (kDa)

6.94

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	11 - 54	1.2e-06	Leucine rich repeat
LRR_14	PF23598	93 - 182	1.3e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17250 AT1G72300
fragaria_vesca	FvH4_6g35570 FvH4_6g35570 FvH4_6g35570 FvH4_6g36780 FvH4_6g36780 FvH4_6g36790 FvH4_6g36810
malus_domestica	MD02G1111300.v1.1 MD09G1166700.v1.1 MD09G1166900.v1.1 MD09G1171000.v1.1 MD17G1155900.v1.1 MD17G1156200.v1.1
prunus_persica	Prupe.3G024400_v2.0.a1 Prupe.3G024600_v2.0.a1 Prupe.3G024700_v2.0.a1 Prupe.3G029500_v2.0.a1
pyrus_communis	pycom09g08450 pycom17g14870 pycom17g14920
rosa_chinensis	RchiOBHm_Chr2g0147291 RchiOBHm_Chr2g0149181 RchiOBHm_Chr2g0149201
rosa_laevigata	RLG00000020249 RLG00000020378 RLG00000020379 RLG00000020380 RLG00000020381 RLG00000020382
rosa_multiflora	Rmu_co8376871.1_g000001 Rmu_sc0001615.1_g000001 Rmu_sc0001615.1_g000002 Rmu_sc0001880.1_g000001 Rmu_sc0008040.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098330 Rroxscaffold_2G00098340 Rroxscaffold_2G00099610
rosa_rugosa	Rorug02G0399000 Rorug02G0409500 Rorug02G0409600 Rorug02G0409700
rosa_samantha	Rh2AG456100 Rh2BG468800 Rh2CG443700 Rh2DG478100
rosa_wichuraiana	Rw2G037320 Rw2G038220 Rw2G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
Acc36I	ACCTGC	1 cut(s)	686
AccI	GTMKAC	1 cut(s)	121
AclWI	GGATC	2 cut(s)	405, 477
AcoI	YGGCCR	1 cut(s)	370
AcsI	RAATTY	1 cut(s)	523
AcuI	CTGAAG	3 cut(s)	523, 545, 600
AfaI	GTAC	4 cut(s)	280, 573, 595, 700
AfiI	CCNNNNNNNGG	1 cut(s)	581
AgsI	TTSAA	3 cut(s)	62, 379, 617
AjnI	CCWGG	4 cut(s)	19, 35, 72, 103
AjuI	GAANNNNNNNTTGG	2 cut(s)	366, 398
AluBI	AGCT	3 cut(s)	49, 184, 518
AluI	AGCT	3 cut(s)	49, 184, 518
Alw21I	GWGCWC	1 cut(s)	733
Alw44I	GTGCAC	1 cut(s)	729
AlwI	GGATC	2 cut(s)	405, 477
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	3 cut(s)	216, 370, 583
ApaLI	GTGCAC	1 cut(s)	729
ApeKI	GCWGC	1 cut(s)	423
ApoI	RAATTY	1 cut(s)	523
AspS9I	GGNCC	1 cut(s)	70
AsuII	TTCGAA	1 cut(s)	443
AvaII	GGWCC	1 cut(s)	70
BaeGI	GKGCMC	2 cut(s)	33, 733
BalI	TGGCCA	1 cut(s)	372
Bbv12I	GWGCWC	1 cut(s)	733
BbvI	GCAGC	1 cut(s)	435
BccI	CCATC	5 cut(s)	205, 492, 496, 583, 611
BciT130I	CCWGG	4 cut(s)	21, 37, 74, 105
BfaI	CTAG	2 cut(s)	245, 458
BfmI	CTRYAG	1 cut(s)	187
BfuAI	ACCTGC	1 cut(s)	686
BglII	AGATCT	1 cut(s)	707
BisI	GCNGC	1 cut(s)	424
BlsI	GCNGC	1 cut(s)	425
BmcAI	AGTACT	1 cut(s)	595
Bme1390I	CCNGG	4 cut(s)	21, 37, 74, 105
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmrFI	CCNGG	4 cut(s)	21, 37, 74, 105
BmrI	ACTGGG	1 cut(s)	425
BmsI	GCATC	2 cut(s)	183, 435
BmuI	ACTGGG	1 cut(s)	425
BpmI	CTGGAG	1 cut(s)	592
Bpu14I	TTCGAA	1 cut(s)	443
Bsc4I	CCNNNNNNNGG	1 cut(s)	581
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	4 cut(s)	254, 431, 586, 609
BseBI	CCWGG	4 cut(s)	21, 37, 74, 105
BseGI	GGATG	3 cut(s)	198, 426, 484
BseLI	CCNNNNNNNGG	1 cut(s)	581
BseMII	CTCAG	4 cut(s)	168, 358, 716, 753
BseNI	ACTGG	4 cut(s)	254, 431, 586, 609
BseSI	GKGCMC	2 cut(s)	33, 733
BseXI	GCAGC	1 cut(s)	435
BsgI	GTGCAG	1 cut(s)	633
BshFI	GGCC	3 cut(s)	218, 372, 585
BsiHKAI	GWGCWC	1 cut(s)	733
BsiSI	CCGG	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	581
BsnI	GGCC	3 cut(s)	218, 372, 585
Bsp119I	TTCGAA	1 cut(s)	443
Bsp1286I	GDGCHC	2 cut(s)	33, 733
Bsp143I	GATC	4 cut(s)	397, 469, 556, 707
BspANI	GGCC	3 cut(s)	218, 372, 585
BspCNI	CTCAG	4 cut(s)	169, 357, 715, 752
BspHI	TCATGA	1 cut(s)	388
BspMAI	CTGCAG	1 cut(s)	191
BspMI	ACCTGC	1 cut(s)	686
BspPI	GGATC	2 cut(s)	405, 477
BspT104I	TTCGAA	1 cut(s)	443
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	4 cut(s)	254, 431, 586, 609
BssAI	RCCGGY	1 cut(s)	92
BssMI	GATC	4 cut(s)	397, 469, 556, 707
Bst2UI	CCWGG	4 cut(s)	21, 37, 74, 105
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstBI	TTCGAA	1 cut(s)	443
BstDEI	CTNAG	7 cut(s)	177, 344, 401, 668, 702, 725, 739
BstF5I	GGATG	3 cut(s)	198, 426, 484
BstKTI	GATC	4 cut(s)	400, 472, 559, 710
BstMBI	GATC	4 cut(s)	397, 469, 556, 707
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstNI	CCWGG	4 cut(s)	21, 37, 74, 105
BstSCI	CCNGG	4 cut(s)	19, 35, 72, 103
BstSFI	CTRYAG	1 cut(s)	187
BstSLI	GKGCMC	2 cut(s)	33, 733
BstV1I	GCAGC	1 cut(s)	435
BstX2I	RGATCY	3 cut(s)	397, 469, 707
BstXI	CCANNNNNNTGG	1 cut(s)	491
BstYI	RGATCY	3 cut(s)	397, 469, 707
BsuRI	GGCC	3 cut(s)	218, 372, 585
BtsCI	GGATG	3 cut(s)	198, 426, 484
BtsIMutI	CAGTG	1 cut(s)	352
BveI	ACCTGC	1 cut(s)	686
CaiI	CAGNNNCTG	1 cut(s)	260
CciI	TCATGA	1 cut(s)	388
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	70
Csp6I	GTAC	4 cut(s)	279, 572, 594, 699
CviAII	CATG	2 cut(s)	139, 389
CviQI	GTAC	4 cut(s)	279, 572, 594, 699
DdeI	CTNAG	7 cut(s)	177, 344, 401, 668, 702, 725, 739
DpnI	GATC	4 cut(s)	399, 471, 558, 709
DpnII	GATC	4 cut(s)	397, 469, 556, 707
EaeI	YGGCCR	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	70
Eco57I	CTGAAG	3 cut(s)	523, 545, 600
EcoRII	CCWGG	4 cut(s)	19, 35, 72, 103
FaeI	CATG	2 cut(s)	142, 392
FaiI	YATR	8 cut(s)	89, 140, 325, 390, 408, 480, 550, 634
FatI	CATG	2 cut(s)	138, 388
FblI	GTMKAC	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	424
FokI	GGATG	3 cut(s)	205, 413, 471
Fsp4HI	GCNGC	1 cut(s)	424
FspBI	CTAG	2 cut(s)	245, 458
GluI	GCNGC	1 cut(s)	424
GsuI	CTGGAG	1 cut(s)	592
HaeIII	GGCC	3 cut(s)	218, 372, 585
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	2 cut(s)	142, 392
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	3 cut(s)	171, 445, 721
HpaII	CCGG	1 cut(s)	93
Hpy166II	GTNNAC	2 cut(s)	122, 731
Hpy188I	TCNGA	4 cut(s)	438, 522, 580, 705
Hpy188III	TCNNGA	3 cut(s)	245, 270, 389
Hpy8I	GTNNAC	2 cut(s)	122, 731
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	3 cut(s)	68, 575, 611
HpyCH4V	TGCA	7 cut(s)	12, 189, 497, 548, 650, 695, 731
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
HpyF3I	CTNAG	7 cut(s)	177, 344, 401, 668, 702, 725, 739
Hsp92II	CATG	2 cut(s)	142, 392
Kzo9I	GATC	4 cut(s)	397, 469, 556, 707
Lsp1109I	GCAGC	1 cut(s)	435
LweI	GCATC	2 cut(s)	183, 435
MaeI	CTAG	2 cut(s)	245, 458
MaeIII	GTNAC	1 cut(s)	249
MalI	GATC	4 cut(s)	399, 471, 558, 709
MboI	GATC	4 cut(s)	397, 469, 556, 707
MboII	GAAGA	5 cut(s)	149, 377, 529, 551, 702
MfeI	CAATTG	1 cut(s)	374
MflI	RGATCY	3 cut(s)	397, 469, 707
MhlI	GDGCHC	2 cut(s)	33, 733
MlsI	TGGCCA	1 cut(s)	372
MluCI	AATT	3 cut(s)	374, 464, 523
MluNI	TGGCCA	1 cut(s)	372
MmeI	TCCRAC	3 cut(s)	314, 375, 738
MnlI	CCTC	5 cut(s)	161, 208, 353, 684, 693
Mox20I	TGGCCA	1 cut(s)	372
MscI	TGGCCA	1 cut(s)	372
MseI	TTAA	3 cut(s)	51, 81, 756
MslI	CAYNNNNRTG	1 cut(s)	631
Msp20I	TGGCCA	1 cut(s)	372
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	4 cut(s)	21, 37, 74, 105
MunI	CAATTG	1 cut(s)	374
MvaI	CCWGG	4 cut(s)	21, 37, 74, 105
MwoI	GCNNNNNNNGC	1 cut(s)	503
NdeII	GATC	4 cut(s)	397, 469, 556, 707
NlaIII	CATG	2 cut(s)	142, 392
NspV	TTCGAA	1 cut(s)	443
PagI	TCATGA	1 cut(s)	388
PfeI	GAWTC	3 cut(s)	171, 445, 721
PkrI	GCNGC	1 cut(s)	425
PsiI	TTATAA	1 cut(s)	89
Psp6I	CCWGG	4 cut(s)	19, 35, 72, 103
PspGI	CCWGG	4 cut(s)	19, 35, 72, 103
PspPI	GGNCC	1 cut(s)	70
PstI	CTGCAG	1 cut(s)	191
PstNI	CAGNNNCTG	1 cut(s)	260
PsuI	RGATCY	3 cut(s)	397, 469, 707
RsaI	GTAC	4 cut(s)	280, 573, 595, 700
RsaNI	GTAC	4 cut(s)	279, 572, 594, 699
RseI	CAYNNNNRTG	1 cut(s)	631
SaqAI	TTAA	3 cut(s)	51, 81, 756
SatI	GCNGC	1 cut(s)	424
Sau3AI	GATC	4 cut(s)	397, 469, 556, 707
Sau96I	GGNCC	1 cut(s)	70
ScaI	AGTACT	1 cut(s)	595
ScrFI	CCNGG	4 cut(s)	21, 37, 74, 105
SduI	GDGCHC	2 cut(s)	33, 733
SfaNI	GCATC	2 cut(s)	183, 435
SfcI	CTRYAG	1 cut(s)	187
SfuI	TTCGAA	1 cut(s)	443
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	631
Sse9I	AATT	3 cut(s)	374, 464, 523
SspMI	CTAG	2 cut(s)	245, 458
StyD4I	CCNGG	4 cut(s)	19, 35, 72, 103
TaqI	TCGA	1 cut(s)	443
TasI	AATT	3 cut(s)	374, 464, 523
TatI	WGTACW	1 cut(s)	593
TfiI	GAWTC	3 cut(s)	171, 445, 721
Tru1I	TTAA	3 cut(s)	51, 81, 756
Tru9I	TTAA	3 cut(s)	51, 81, 756
TscAI	CASTG	1 cut(s)	352
TseI	GCWGC	1 cut(s)	423
TspDTI	ATGAA	1 cut(s)	377
TspRI	CASTG	1 cut(s)	352
VneI	GTGCAC	1 cut(s)	729
VpaK11BI	GGWCC	1 cut(s)	70
XapI	RAATTY	1 cut(s)	523
XbaI	TCTAGA	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	121
XspI	CTAG	2 cut(s)	245, 458
ZrmI	AGTACT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.