Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001554

Physical Location & Seq

Genomic Coordinates Reverse (-)

13691438 .. 13691992

Gene Structure 555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1166900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGAGGATGTCTCGGCAACGCAGCTTCTTCTCCTTTCCGCTCTACTTTTTCTGCTGCCTTGCTCTGCTTATGATGCCTGCGACGAACTCGACCGTGATGCTCTCTTGTCCTTGCCTTTCAAGGCACCGTTGAATTGGTCTGCTTCGACTGACTGCTGCCTTTGGGATGGAATCATCTGCGACCCACTTTACCATATCCGCGTCATCTGGCTACGGTTGCCGAAAAGAGGCTTATCCGGTGTCGTCTCTTCTGCCGTCACCAACCTCACCCTTCTAACCCACCTCAATCTTTCCCACAATTCCCTATTGGGTTCTCTCCCAGATGACTTGCTTTCTTCCCTACCAAGTCTTCAGGTCATTGACTTGAGCTTCAATCGTCTCATCGGCCGCTTTCCATCATCTTCTAATGCAAGCAACCACCTTCAAATTATAAACTTGTCCAGCAACTTCTTCAATGGAGCAATCCCGTCTTCGGTCCTTGTCCCATCAATATCAATTTACAAAGTCAGCAACAACAGCTTTTCCAGGTCAATAGCTTTCACTTCCTGTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001653 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006885 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032502 GO:0032989 GO:0036211 GO:0038023 GO:0040007 GO:0042592 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045851 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051716 GO:0055067 GO:0055080 GO:0060089 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0098771 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

185

Amino Acids

20.04

Weight (kDa)

5.68

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	71 - 127	4.5e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17250 AT1G72300
fragaria_vesca	FvH4_6g35570 FvH4_6g35570 FvH4_6g35570 FvH4_6g36780 FvH4_6g36780 FvH4_6g36790 FvH4_6g36810
malus_domestica	MD02G1111300.v1.1 MD09G1166700.v1.1 MD09G1166900.v1.1 MD09G1171000.v1.1 MD17G1155900.v1.1 MD17G1156200.v1.1
prunus_persica	Prupe.3G024400_v2.0.a1 Prupe.3G024600_v2.0.a1 Prupe.3G024700_v2.0.a1 Prupe.3G029500_v2.0.a1
pyrus_communis	pycom09g08450 pycom17g14870 pycom17g14920
rosa_chinensis	RchiOBHm_Chr2g0147291 RchiOBHm_Chr2g0149181 RchiOBHm_Chr2g0149201
rosa_laevigata	RLG00000020249 RLG00000020378 RLG00000020379 RLG00000020380 RLG00000020381 RLG00000020382
rosa_multiflora	Rmu_co8376871.1_g000001 Rmu_sc0001615.1_g000001 Rmu_sc0001615.1_g000002 Rmu_sc0001880.1_g000001 Rmu_sc0008040.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098330 Rroxscaffold_2G00098340 Rroxscaffold_2G00099610
rosa_rugosa	Rorug02G0399000 Rorug02G0409500 Rorug02G0409600 Rorug02G0409700
rosa_samantha	Rh2AG456100 Rh2BG468800 Rh2CG443700 Rh2DG478100
rosa_wichuraiana	Rw2G037320 Rw2G038220 Rw2G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	431
AccB1I	GGYRCC	1 cut(s)	124
AccBSI	CCGCTC	1 cut(s)	41
AccII	CGCG	1 cut(s)	201
AciI	CCGC	3 cut(s)	39, 199, 388
AcoI	YGGCCR	1 cut(s)	385
AcuI	CTGAAG	1 cut(s)	335
AfiI	CCNNNNNNNGG	2 cut(s)	227, 472
AgsI	TTSAA	5 cut(s)	121, 133, 373, 425, 454
AjnI	CCWGG	1 cut(s)	524
AluBI	AGCT	4 cut(s)	25, 369, 519, 536
AluI	AGCT	4 cut(s)	25, 369, 519, 536
Alw26I	GTCTC	3 cut(s)	16, 250, 383
AoxI	GGCC	1 cut(s)	385
ApeKI	GCWGC	3 cut(s)	22, 55, 156
AspS9I	GGNCC	1 cut(s)	475
AsuHPI	GGTGA	2 cut(s)	250, 259
AvaII	GGWCC	1 cut(s)	475
BanI	GGYRCC	1 cut(s)	124
BbsI	GAAGAC	2 cut(s)	341, 462
BbvI	GCAGC	3 cut(s)	34, 42, 143
BccI	CCATC	3 cut(s)	161, 403, 493
BceAI	ACGGC	1 cut(s)	239
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BciT130I	CCWGG	1 cut(s)	526
BcoDI	GTCTC	3 cut(s)	16, 250, 383
BisI	GCNGC	4 cut(s)	23, 56, 157, 388
BlsI	GCNGC	4 cut(s)	24, 57, 158, 389
Bme1390I	CCNGG	1 cut(s)	526
Bme18I	GGWCC	1 cut(s)	475
BmgT120I	GGNCC	1 cut(s)	475
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	526
BmsI	GCATC	2 cut(s)	64, 88
BpiI	GAAGAC	2 cut(s)	341, 462
BplI	GAGNNNNNCTC	1 cut(s)	28
BpuEI	CTTGAG	1 cut(s)	385
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 472
BseBI	CCWGG	1 cut(s)	526
BseGI	GGATG	2 cut(s)	13, 172
BseLI	CCNNNNNNNGG	2 cut(s)	227, 472
BseX3I	CGGCCG	1 cut(s)	385
BseXI	GCAGC	3 cut(s)	34, 42, 143
Bsh1236I	CGCG	1 cut(s)	201
Bsh1285I	CGRYCG	2 cut(s)	94, 388
BshFI	GGCC	1 cut(s)	387
BshNI	GGYRCC	1 cut(s)	124
BsiEI	CGRYCG	2 cut(s)	94, 388
BsiSI	CCGG	1 cut(s)	237
BslFI	GGGAC	1 cut(s)	467
BslI	CCNNNNNNNGG	2 cut(s)	227, 472
BsmAI	GTCTC	3 cut(s)	16, 250, 383
BsmBI	CGTCTC	2 cut(s)	250, 383
BsmFI	GGGAC	1 cut(s)	467
BsnI	GGCC	1 cut(s)	387
BspACI	CCGC	3 cut(s)	39, 199, 388
BspANI	GGCC	1 cut(s)	387
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	126
BspT107I	GGYRCC	1 cut(s)	124
BsrBI	CCGCTC	1 cut(s)	41
Bst2UI	CCWGG	1 cut(s)	526
Bst4CI	ACNGT	3 cut(s)	95, 129, 216
Bst6I	CTCTTC	1 cut(s)	253
BstC8I	GCNNGC	2 cut(s)	79, 412
BstF5I	GGATG	2 cut(s)	13, 172
BstFNI	CGCG	1 cut(s)	201
BstMAI	GTCTC	3 cut(s)	16, 250, 383
BstMCI	CGRYCG	2 cut(s)	94, 388
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 217, 516
BstNI	CCWGG	1 cut(s)	526
BstSCI	CCNGG	1 cut(s)	524
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	3 cut(s)	34, 42, 143
BstV2I	GAAGAC	2 cut(s)	341, 462
BstZI	CGGCCG	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	387
BtsCI	GGATG	2 cut(s)	13, 172
Cac8I	GCNNGC	2 cut(s)	79, 412
Cfr13I	GGNCC	1 cut(s)	475
CseI	GACGC	1 cut(s)	190
CviJI	RGCY	7 cut(s)	25, 211, 231, 369, 387, 519, 536
CviKI_1	RGCY	7 cut(s)	25, 211, 231, 369, 387, 519, 536
EaeI	YGGCCR	1 cut(s)	385
EagI	CGGCCG	1 cut(s)	385
Eam1104I	CTCTTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	253
EclXI	CGGCCG	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	475
Eco52I	CGGCCG	1 cut(s)	385
Eco57I	CTGAAG	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	524
Esp3I	CGTCTC	2 cut(s)	250, 383
FaiI	YATR	3 cut(s)	72, 195, 431
FaqI	GGGAC	1 cut(s)	467
Fnu4HI	GCNGC	4 cut(s)	23, 56, 157, 388
FokI	GGATG	2 cut(s)	20, 179
Fsp4HI	GCNGC	4 cut(s)	23, 56, 157, 388
GluI	GCNGC	4 cut(s)	23, 56, 157, 388
HaeIII	GGCC	1 cut(s)	387
HapII	CCGG	1 cut(s)	237
HgaI	GACGC	1 cut(s)	190
HinfI	GANTC	1 cut(s)	171
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	2 cut(s)	250, 259
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	281, 431
HpyCH4III	ACNGT	3 cut(s)	95, 129, 216
HpyCH4V	TGCA	1 cut(s)	410
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 217, 516
LmnI	GCTCC	1 cut(s)	458
LpnPI	CCDG	8 cut(s)	91, 193, 250, 333, 338, 454, 511, 538
Lsp1109I	GCAGC	3 cut(s)	34, 42, 143
LweI	GCATC	2 cut(s)	64, 88
MaeIII	GTNAC	1 cut(s)	256
MbiI	CCGCTC	1 cut(s)	41
MboII	GAAGA	7 cut(s)	20, 240, 327, 341, 393, 442, 462
MluCI	AATT	4 cut(s)	133, 298, 426, 495
MnlI	CCTC	3 cut(s)	221, 275, 293
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	526
MvaI	CCWGG	1 cut(s)	526
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	3 cut(s)	74, 217, 516
NlaIV	GGNNCC	1 cut(s)	126
NmuCI	GTSAC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	171
PkrI	GCNGC	4 cut(s)	24, 57, 158, 389
PsiI	TTATAA	1 cut(s)	431
Psp6I	CCWGG	1 cut(s)	524
PspGI	CCWGG	1 cut(s)	524
PspN4I	GGNNCC	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	475
SatI	GCNGC	4 cut(s)	23, 56, 157, 388
Sau96I	GGNCC	1 cut(s)	475
ScrFI	CCNGG	1 cut(s)	526
SetI	ASST	9 cut(s)	27, 267, 285, 357, 371, 423, 521, 530, 538
SfaNI	GCATC	2 cut(s)	64, 88
SinI	GGWCC	1 cut(s)	475
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	4 cut(s)	133, 298, 426, 495
SsiI	CCGC	3 cut(s)	39, 199, 388
StyD4I	CCNGG	1 cut(s)	524
TaaI	ACNGT	3 cut(s)	95, 129, 216
TaqI	TCGA	2 cut(s)	90, 146
TaqII	GACCGA	1 cut(s)	463
TasI	AATT	4 cut(s)	133, 298, 426, 495
TauI	GCSGC	1 cut(s)	390
TfiI	GAWTC	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	3 cut(s)	22, 55, 156
Tsp45I	GTSAC	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.