Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001554

Physical Location & Seq

Genomic Coordinates Reverse (-)

6465268 .. 6466467

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g08450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGAATCACCTGCGACCCACTTGACCACCGCCGCGTCATCCGGCTGTGGTTGCCGAAAAGAGGCTTATCCGGCGTCGTCTCTTCGGCCATTACCAACCTCACCCGTCTCACCCACCTCAATCTTTCCCACAATTCCCTATTGGGTCATTGACTTGAGCTTCAATCGTCTCAACGGCCGCTTTCCACCATCTTCGAATGGAAGCAGCCACCTTCAGATTATAAACTTGTCCAGCAACTTCTTCAATGGAACAATCCCGTCTTCGGTCCTTGTCCCATCAATATCAATTTTCAATGTCAGCAACAACAGCTTTTCCGGGTCAATACCGATAAGCAACGGCAGCAATCACGCTTCCCTTACATTCTTCGACTTGTCCTTCAATGAATTCACTGACACGATCCCCCCTGGAATCGGATCATGCTTCAAGCTCCAAGTTTTCCGTGCAGGCTTCAACGGCCTCTCTGGTTCTCTCCCTAATGAGATTCTCAATCTTGCTGATCTCCAACAGCTTTCACTTCCTGTCAATAGCCTCTCTGGACACATCGGCGATGGCATTGTGAAGCTCACCAATCTCAAGATCATAGAGCTCTACTCAAACCTATTCTCCGGGAAAATCACCAGCCATATTGGTAACCTTTCAATGTTGGAAAAGCTGCTCCTCCACATCAACAACTTCACAGGTCCTTTGCCTTCATCTCTCACCAACTGCACAAATCTATCGACCTTGAATTTGCGGGTCAACAACTTGACTGGAGAGCTCTCTGCCTTCAATTTTTCGACTCTCCAACATCTCGCCACTCTGGACCTTGGCAACAACAACTTCAATGGTGAGTTACCTCAAAGCCTCTACTCATGCAAGTCCCTAACAGCTATTAGATTTGCCAGCAATCAGCTCACAGGCGAGATATCACCTGAAATAGTCGCATTAGAATCATTGTCTTACCTGTCCATCTCTACCAACAACCTGAGAAATGCAGCGGGGGCTTTTAGGATTCTGAAGGGTTGCAAGAATCTGACCACTCTGGTCCTGTCCAAGAATTTTTTCAATGAGCCTTTGCCAGATGATAAAAGCCTTGGAGACCCTGTCAAGTACCCAGCTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001653 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006885 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032502 GO:0032989 GO:0036211 GO:0038023 GO:0040007 GO:0042592 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045851 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051716 GO:0055067 GO:0055080 GO:0060089 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0098771 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

368

Amino Acids

39.35

Weight (kDa)

7.04

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	155 - 249	7.3e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17250 AT1G72300
fragaria_vesca	FvH4_6g35570 FvH4_6g35570 FvH4_6g35570 FvH4_6g36780 FvH4_6g36780 FvH4_6g36790 FvH4_6g36810
malus_domestica	MD02G1111300.v1.1 MD09G1166700.v1.1 MD09G1166900.v1.1 MD09G1171000.v1.1 MD17G1155900.v1.1 MD17G1156200.v1.1
prunus_persica	Prupe.3G024400_v2.0.a1 Prupe.3G024600_v2.0.a1 Prupe.3G024700_v2.0.a1 Prupe.3G029500_v2.0.a1
pyrus_communis	pycom09g08450 pycom17g14870 pycom17g14920
rosa_chinensis	RchiOBHm_Chr2g0147291 RchiOBHm_Chr2g0149181 RchiOBHm_Chr2g0149201
rosa_laevigata	RLG00000020249 RLG00000020378 RLG00000020379 RLG00000020380 RLG00000020381 RLG00000020382
rosa_multiflora	Rmu_co8376871.1_g000001 Rmu_sc0001615.1_g000001 Rmu_sc0001615.1_g000002 Rmu_sc0001880.1_g000001 Rmu_sc0008040.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098330 Rroxscaffold_2G00098340 Rroxscaffold_2G00099610
rosa_rugosa	Rorug02G0399000 Rorug02G0409500 Rorug02G0409600 Rorug02G0409700
rosa_samantha	Rh2AG456100 Rh2BG468800 Rh2CG443700 Rh2DG478100
rosa_wichuraiana	Rw2G037320 Rw2G038220 Rw2G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	221
AarI	CACCTGC	1 cut(s)	19
Acc36I	ACCTGC	1 cut(s)	19
AccII	CGCG	1 cut(s)	35
AciI	CCGC	5 cut(s)	30, 33, 178, 733, 977
AclWI	GGATC	2 cut(s)	391, 421
AcoI	YGGCCR	2 cut(s)	86, 175
AcsI	RAATTY	3 cut(s)	383, 727, 1036
AcuI	CTGAAG	2 cut(s)	197, 1016
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	1 cut(s)	1091
AfiI	CCNNNNNNNGG	3 cut(s)	61, 262, 410
AjnI	CCWGG	1 cut(s)	403
AjuI	GAANNNNNNNTTGG	2 cut(s)	1025, 1057
Alw21I	GWGCWC	2 cut(s)	588, 759
Alw26I	GTCTC	4 cut(s)	84, 112, 173, 1071
AlwI	GGATC	2 cut(s)	391, 421
AoxI	GGCC	3 cut(s)	86, 175, 454
ApeKI	GCWGC	4 cut(s)	204, 339, 652, 974
ApoI	RAATTY	3 cut(s)	383, 727, 1036
ArsI	GACNNNNNNTTYG	2 cut(s)	712, 744
Asp700I	GAANNNNTTC	1 cut(s)	1040
AspS9I	GGNCC	4 cut(s)	265, 680, 802, 1024
AsuC2I	CCSGG	2 cut(s)	316, 607
AsuHPI	GGTGA	7 cut(s)	93, 102, 556, 607, 691, 839, 900
AsuII	TTCGAA	1 cut(s)	194
AvaII	GGWCC	4 cut(s)	265, 680, 802, 1024
BanII	GRGCYC	2 cut(s)	588, 759
BbsI	GAAGAC	1 cut(s)	252
Bbv12I	GWGCWC	2 cut(s)	588, 759
BbvI	GCAGC	4 cut(s)	216, 351, 639, 986
BccI	CCATC	4 cut(s)	196, 283, 542, 956
BceAI	ACGGC	3 cut(s)	190, 352, 469
BciT130I	CCWGG	1 cut(s)	405
BcnI	CCSGG	2 cut(s)	316, 607
BcoDI	GTCTC	4 cut(s)	84, 112, 173, 1071
BfaI	CTAG	1 cut(s)	1102
BfuAI	ACCTGC	1 cut(s)	19
BisI	GCNGC	6 cut(s)	33, 178, 205, 340, 653, 975
BlsI	GCNGC	6 cut(s)	34, 179, 206, 341, 654, 976
Bme1390I	CCNGG	3 cut(s)	316, 405, 607
Bme18I	GGWCC	4 cut(s)	265, 680, 802, 1024
BmgT120I	GGNCC	4 cut(s)	265, 680, 802, 1024
BmrFI	CCNGG	3 cut(s)	316, 405, 607
BpiI	GAAGAC	1 cut(s)	252
BplI	GAGNNNNNCTC	2 cut(s)	575, 607
BpmI	CTGGAG	1 cut(s)	771
Bpu14I	TTCGAA	1 cut(s)	194
BpuEI	CTTGAG	2 cut(s)	175, 557
BpuMI	CCSGG	2 cut(s)	316, 607
BsaHI	GRCGYC	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	1071
BsaJI	CCNNGG	3 cut(s)	403, 805, 1072
BsaXI	ACNNNNNCTCC	4 cut(s)	587, 617, 1068, 1098
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 262, 410
Bse1I	ACTGG	1 cut(s)	754
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	3 cut(s)	403, 805, 1072
BseGI	GGATG	1 cut(s)	38
BseLI	CCNNNNNNNGG	3 cut(s)	61, 262, 410
BseMII	CTCAG	1 cut(s)	956
BseNI	ACTGG	1 cut(s)	754
BseRI	GAGGAG	1 cut(s)	647
BseX3I	CGGCCG	1 cut(s)	175
BseXI	GCAGC	4 cut(s)	216, 351, 639, 986
BseYI	CCCAGC	1 cut(s)	1093
BsgI	GTGCAG	2 cut(s)	462, 691
Bsh1236I	CGCG	1 cut(s)	35
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	3 cut(s)	88, 177, 456
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	2 cut(s)	588, 759
BsiSI	CCGG	4 cut(s)	42, 71, 315, 606
BslFI	GGGAC	2 cut(s)	257, 844
BslI	CCNNNNNNNGG	3 cut(s)	61, 262, 410
BsmAI	GTCTC	4 cut(s)	84, 112, 173, 1071
BsmBI	CGTCTC	3 cut(s)	84, 112, 173
BsmFI	GGGAC	2 cut(s)	257, 844
BsnI	GGCC	3 cut(s)	88, 177, 456
Bso31I	GGTCTC	1 cut(s)	1071
Bsp119I	TTCGAA	1 cut(s)	194
Bsp1286I	GDGCHC	2 cut(s)	588, 759
Bsp143I	GATC	4 cut(s)	396, 413, 496, 576
BspACI	CCGC	5 cut(s)	30, 33, 178, 733, 977
BspANI	GGCC	3 cut(s)	88, 177, 456
BspCNI	CTCAG	1 cut(s)	957
BspFNI	CGCG	1 cut(s)	35
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	2 cut(s)	391, 421
BspT104I	TTCGAA	1 cut(s)	194
BspTNI	GGTCTC	1 cut(s)	1071
BsrI	ACTGG	1 cut(s)	754
BssECI	CCNNGG	3 cut(s)	403, 805, 1072
BssMI	GATC	4 cut(s)	396, 413, 496, 576
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	2 cut(s)	805, 1072
Bst2UI	CCWGG	1 cut(s)	405
Bst6I	CTCTTC	1 cut(s)	87
BstACI	GRCGYC	1 cut(s)	74
BstBI	TTCGAA	1 cut(s)	194
BstC8I	GCNNGC	3 cut(s)	445, 883, 1099
BstDEI	CTNAG	1 cut(s)	965
BstEII	GGTNACC	1 cut(s)	629
BstF5I	GGATG	1 cut(s)	38
BstFNI	CGCG	1 cut(s)	35
BstKTI	GATC	4 cut(s)	399, 416, 499, 579
BstMAI	GTCTC	4 cut(s)	84, 112, 173, 1071
BstMBI	GATC	4 cut(s)	396, 413, 496, 576
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	6 cut(s)	51, 71, 306, 339, 453, 980
BstNI	CCWGG	1 cut(s)	405
BstPI	GGTNACC	1 cut(s)	629
BstSCI	CCNGG	3 cut(s)	314, 403, 605
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	4 cut(s)	216, 351, 639, 986
BstV2I	GAAGAC	1 cut(s)	252
BstZI	CGGCCG	1 cut(s)	175
BsuRI	GGCC	3 cut(s)	88, 177, 456
BtgZI	GCGATG	1 cut(s)	561
BtsCI	GGATG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	387
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	3 cut(s)	445, 883, 1099
Cfr13I	GGNCC	4 cut(s)	265, 680, 802, 1024
CseI	GACGC	2 cut(s)	24, 63
Csp6I	GTAC	1 cut(s)	1090
CviAII	CATG	2 cut(s)	417, 852
CviQI	GTAC	1 cut(s)	1090
DdeI	CTNAG	1 cut(s)	965
DpnI	GATC	4 cut(s)	398, 415, 498, 578
DpnII	GATC	4 cut(s)	396, 413, 496, 576
EaeI	YGGCCR	2 cut(s)	86, 175
EagI	CGGCCG	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Ecl136II	GAGCTC	2 cut(s)	586, 757
EclXI	CGGCCG	1 cut(s)	175
Eco130I	CCWWGG	2 cut(s)	805, 1072
Eco24I	GRGCYC	2 cut(s)	588, 759
Eco31I	GGTCTC	1 cut(s)	1071
Eco32I	GATATC	1 cut(s)	906
Eco47I	GGWCC	4 cut(s)	265, 680, 802, 1024
Eco52I	CGGCCG	1 cut(s)	175
Eco53kI	GAGCTC	2 cut(s)	586, 757
Eco57I	CTGAAG	2 cut(s)	197, 1016
Eco91I	GGTNACC	1 cut(s)	629
EcoICRI	GAGCTC	2 cut(s)	586, 757
EcoO109I	RGGNCCY	1 cut(s)	680
EcoO65I	GGTNACC	1 cut(s)	629
EcoRI	GAATTC	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	403
EcoRV	GATATC	1 cut(s)	906
EcoT14I	CCWWGG	2 cut(s)	805, 1072
EcoT38I	GRGCYC	2 cut(s)	588, 759
ErhI	CCWWGG	2 cut(s)	805, 1072
Esp3I	CGTCTC	3 cut(s)	84, 112, 173
FaeI	CATG	2 cut(s)	420, 855
FaiI	YATR	5 cut(s)	221, 418, 581, 624, 853
FaqI	GGGAC	2 cut(s)	257, 844
FatI	CATG	2 cut(s)	416, 851
FauI	CCCGC	2 cut(s)	726, 970
Fnu4HI	GCNGC	6 cut(s)	33, 178, 205, 340, 653, 975
FokI	GGATG	1 cut(s)	25
FriOI	GRGCYC	2 cut(s)	588, 759
Fsp4HI	GCNGC	6 cut(s)	33, 178, 205, 340, 653, 975
FspBI	CTAG	1 cut(s)	1102
GluI	GCNGC	6 cut(s)	33, 178, 205, 340, 653, 975
GsaI	CCCAGC	1 cut(s)	1097
GsuI	CTGGAG	1 cut(s)	771
HaeIII	GGCC	3 cut(s)	88, 177, 456
HapII	CCGG	4 cut(s)	42, 71, 315, 606
HgaI	GACGC	2 cut(s)	24, 63
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	2 cut(s)	420, 855
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HinfI	GANTC	7 cut(s)	5, 408, 481, 778, 929, 991, 1009
HpaII	CCGG	4 cut(s)	42, 71, 315, 606
HphI	GGTGA	7 cut(s)	93, 102, 556, 607, 691, 839, 900
Hpy166II	GTNNAC	1 cut(s)	739
Hpy188I	TCNGA	4 cut(s)	216, 413, 996, 1014
Hpy188III	TCNNGA	3 cut(s)	534, 574, 800
Hpy8I	GTNNAC	1 cut(s)	739
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	5 cut(s)	221, 385, 699, 775, 991
HpyCH4V	TGCA	5 cut(s)	443, 708, 855, 974, 1005
HpyF10VI	GCNNNNNNNGC	6 cut(s)	51, 71, 306, 339, 453, 980
HpyF3I	CTNAG	1 cut(s)	965
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	2 cut(s)	420, 855
Kzo9I	GATC	4 cut(s)	396, 413, 496, 576
LmnI	GCTCC	2 cut(s)	432, 660
Lsp1109I	GCAGC	4 cut(s)	216, 351, 639, 986
MaeI	CTAG	1 cut(s)	1102
MaeIII	GTNAC	2 cut(s)	629, 831
MalI	GATC	4 cut(s)	398, 415, 498, 578
MboI	GATC	4 cut(s)	396, 413, 496, 576
MboII	GAAGA	5 cut(s)	74, 183, 232, 252, 355
MhlI	GDGCHC	2 cut(s)	588, 759
MluCI	AATT	6 cut(s)	132, 285, 383, 727, 769, 1036
MlyI	GAGTC	1 cut(s)	772
MmeI	TCCRAC	3 cut(s)	526, 624, 808
MnlI	CCTC	8 cut(s)	55, 109, 127, 467, 539, 668, 846, 854
MroXI	GAANNNNTTC	1 cut(s)	1040
MspA1I	CMGCKG	2 cut(s)	977, 1097
MspI	CCGG	4 cut(s)	42, 71, 315, 606
MspR9I	CCNGG	3 cut(s)	316, 405, 607
MvaI	CCWGG	1 cut(s)	405
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	6 cut(s)	51, 71, 306, 339, 453, 980
NciI	CCSGG	2 cut(s)	316, 607
NdeII	GATC	4 cut(s)	396, 413, 496, 576
NlaIII	CATG	2 cut(s)	420, 855
NspV	TTCGAA	1 cut(s)	194
PaqCI	CACCTGC	1 cut(s)	19
PdmI	GAANNNNTTC	1 cut(s)	1040
PfeI	GAWTC	6 cut(s)	5, 408, 481, 929, 991, 1009
PflFI	GACNNNGTC	1 cut(s)	1082
PfoI	TCCNGGA	1 cut(s)	605
PkrI	GCNGC	6 cut(s)	34, 179, 206, 341, 654, 976
PleI	GAGTC	1 cut(s)	772
PpsI	GAGTC	1 cut(s)	772
PpuMI	RGGWCCY	1 cut(s)	680
PsiI	TTATAA	1 cut(s)	221
Psp124BI	GAGCTC	2 cut(s)	588, 759
Psp5II	RGGWCCY	1 cut(s)	680
Psp6I	CCWGG	1 cut(s)	403
PspEI	GGTNACC	1 cut(s)	629
PspFI	CCCAGC	1 cut(s)	1093
PspGI	CCWGG	1 cut(s)	403
PspPI	GGNCC	4 cut(s)	265, 680, 802, 1024
PspPPI	RGGWCCY	1 cut(s)	680
PsyI	GACNNNGTC	1 cut(s)	1082
PvuII	CAGCTG	1 cut(s)	1097
RsaI	GTAC	1 cut(s)	1091
RsaNI	GTAC	1 cut(s)	1090
SacI	GAGCTC	2 cut(s)	588, 759
SatI	GCNGC	6 cut(s)	33, 178, 205, 340, 653, 975
Sau3AI	GATC	4 cut(s)	396, 413, 496, 576
Sau96I	GGNCC	4 cut(s)	265, 680, 802, 1024
SchI	GAGTC	1 cut(s)	772
ScrFI	CCNGG	3 cut(s)	316, 405, 607
SduI	GDGCHC	2 cut(s)	588, 759
SfuI	TTCGAA	1 cut(s)	194
SinI	GGWCC	4 cut(s)	265, 680, 802, 1024
SmlI	CTYRAG	2 cut(s)	154, 572
SmoI	CTYRAG	2 cut(s)	154, 572
Sse9I	AATT	6 cut(s)	132, 285, 383, 727, 769, 1036
SsiI	CCGC	5 cut(s)	30, 33, 178, 733, 977
SspMI	CTAG	1 cut(s)	1102
SstI	GAGCTC	2 cut(s)	588, 759
StyD4I	CCNGG	3 cut(s)	314, 403, 605
StyI	CCWWGG	2 cut(s)	805, 1072
TaqI	TCGA	4 cut(s)	194, 366, 719, 776
TaqII	GACCGA	1 cut(s)	253
TasI	AATT	6 cut(s)	132, 285, 383, 727, 769, 1036
TauI	GCSGC	2 cut(s)	35, 180
TfiI	GAWTC	6 cut(s)	5, 408, 481, 929, 991, 1009
TscAI	CASTG	1 cut(s)	394
TseI	GCWGC	4 cut(s)	204, 339, 652, 974
TspDTI	ATGAA	2 cut(s)	396, 681
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	1 cut(s)	394
Tth111I	GACNNNGTC	1 cut(s)	1082
VpaK11BI	GGWCC	4 cut(s)	265, 680, 802, 1024
XapI	RAATTY	3 cut(s)	383, 727, 1036
XmnI	GAANNNNTTC	1 cut(s)	1040
XspI	CTAG	1 cut(s)	1102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.