Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001554

Physical Location & Seq

Genomic Coordinates Forward (+)

64415008 .. 64415808

Gene Structure 801 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020378

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAAGAATGATGTCCCAACAACATTGCTAATCTTTTTGTGTCAGTGGGTTTTCATTATGTTGTTTCTCCCTTGCTGTGCCTCTGCTTCTTGTGATCAAGTGGATCGTGACGCTCTCTTATCCTTAGAATTCAAGGCCTCATCACCATTGAATTGGTCTGCTTCCTCGGACTGTTGCCTCTGGGAAGGAATACTCTGTGGTCCCGATGATCGAGTCCTCCATCTATGGTTGCTTGGGAGAGGCTTAAGCGGTTCAGTCTCTCCAGCTATCACCAAGCTCACATATCTCACCCACCTCAATCTTTCCCAGAATACCCTGTTGGGTGTACTTCCAGATGGCTTGTTTTCCTCCTTCTTTCACCTCCAAGTTCTAGACTTGAGTTTCAATCGTCTCAACGGCCACTTACCAATTTCATCTAATGAAGCCAGTAAGATTCAGATTGTAGACTTGACTAGCAATTACTTCAATGTAACAATCCCATCTATGACTTCTGGCTCTCTAACCATTTTCAATGTCAGCAAAAACAGCTTTGCTGGCCCCATTCCCATCTCTGTTTTCTGCAAAAATGGCAGCAATCACAACAACCTCACCTTTGTGGACTTTTCCTTCAACAGATTTACTGATCCAATTCCTATTGGACTTGTCAGGTTGGAGAAGATGGTTCTCCACAGCAACAACCTCACAGGTGCCATACCTTTATCTCTTACCAACTGCACAAATCTGTCCACCTTGAATTTGCGGGTTAAGAGGAGAGCTCTCTGCCTTCAATTTCTCTACGTTCCAACTCCTCACCACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001653 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006885 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032502 GO:0032989 GO:0036211 GO:0038023 GO:0040007 GO:0042592 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045851 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051716 GO:0055067 GO:0055080 GO:0060089 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0098771 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

267

Amino Acids

29.39

Weight (kDa)

7.58

Isoelectric Point (pI)

26.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17250 AT1G72300
fragaria_vesca	FvH4_6g35570 FvH4_6g35570 FvH4_6g35570 FvH4_6g36780 FvH4_6g36780 FvH4_6g36790 FvH4_6g36810
malus_domestica	MD02G1111300.v1.1 MD09G1166700.v1.1 MD09G1166900.v1.1 MD09G1171000.v1.1 MD17G1155900.v1.1 MD17G1156200.v1.1
prunus_persica	Prupe.3G024400_v2.0.a1 Prupe.3G024600_v2.0.a1 Prupe.3G024700_v2.0.a1 Prupe.3G029500_v2.0.a1
pyrus_communis	pycom09g08450 pycom17g14870 pycom17g14920
rosa_chinensis	RchiOBHm_Chr2g0147291 RchiOBHm_Chr2g0149181 RchiOBHm_Chr2g0149201
rosa_laevigata	RLG00000020249 RLG00000020378 RLG00000020379 RLG00000020380 RLG00000020381 RLG00000020382
rosa_multiflora	Rmu_co8376871.1_g000001 Rmu_sc0001615.1_g000001 Rmu_sc0001615.1_g000002 Rmu_sc0001880.1_g000001 Rmu_sc0008040.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098330 Rroxscaffold_2G00098340 Rroxscaffold_2G00099610
rosa_rugosa	Rorug02G0399000 Rorug02G0409500 Rorug02G0409600 Rorug02G0409700
rosa_samantha	Rh2AG456100 Rh2BG468800 Rh2CG443700 Rh2DG478100
rosa_wichuraiana	Rw2G037320 Rw2G038220 Rw2G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	686
AccI	GTMKAC	1 cut(s)	444
AciI	CCGC	2 cut(s)	249, 739
AclWI	GGATC	2 cut(s)	111, 617
AcoI	YGGCCR	1 cut(s)	397
AcsI	RAATTY	2 cut(s)	128, 733
AfaI	GTAC	1 cut(s)	327
AflII	CTTAAG	1 cut(s)	244
AgsI	TTSAA	8 cut(s)	133, 151, 385, 466, 511, 610, 733, 767
AjuI	GAANNNNNNNTTGG	2 cut(s)	302, 334
AleI	CACNNNNGTG	1 cut(s)	593
AluBI	AGCT	4 cut(s)	266, 277, 528, 755
AluI	AGCT	4 cut(s)	266, 277, 528, 755
Alw21I	GWGCWC	1 cut(s)	757
Alw26I	GTCTC	2 cut(s)	262, 395
AlwI	GGATC	2 cut(s)	111, 617
AoxI	GGCC	3 cut(s)	135, 397, 535
ApeKI	GCWGC	1 cut(s)	570
ApoI	RAATTY	2 cut(s)	128, 733
AspS9I	GGNCC	2 cut(s)	200, 536
AsuHPI	GGTGA	6 cut(s)	135, 262, 280, 350, 580, 782
AvaII	GGWCC	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	686
BanII	GRGCYC	1 cut(s)	757
Bbv12I	GWGCWC	1 cut(s)	757
BbvI	GCAGC	1 cut(s)	582
BccI	CCATC	5 cut(s)	228, 329, 487, 554, 652
BceAI	ACGGC	1 cut(s)	412
BclI	TGATCA	1 cut(s)	94
BcoDI	GTCTC	2 cut(s)	262, 395
BfaI	CTAG	2 cut(s)	371, 453
BfrI	CTTAAG	1 cut(s)	244
BisI	GCNGC	1 cut(s)	571
BlsI	GCNGC	1 cut(s)	572
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	2 cut(s)	200, 536
BmiI	GGNNCC	3 cut(s)	202, 538, 688
BplI	GAGNNNNNCTC	2 cut(s)	739, 771
BpmI	CTGGAG	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	397
BsaJI	CCNNGG	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	426
Bse3DI	GCAATG	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	165
BseMI	GCAATG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	426
BseRI	GAGGAG	2 cut(s)	763, 777
BseXI	GCAGC	1 cut(s)	582
BsgI	GTGCAG	1 cut(s)	697
BshFI	GGCC	3 cut(s)	137, 399, 537
BshNI	GGYRCC	1 cut(s)	686
BsiHKAI	GWGCWC	1 cut(s)	757
BslFI	GGGAC	1 cut(s)	186
BsmAI	GTCTC	2 cut(s)	262, 395
BsmBI	CGTCTC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	186
BsnI	GGCC	3 cut(s)	137, 399, 537
Bsp1286I	GDGCHC	1 cut(s)	757
Bsp143I	GATC	4 cut(s)	94, 103, 208, 622
BspACI	CCGC	2 cut(s)	249, 739
BspANI	GGCC	3 cut(s)	137, 399, 537
BspLI	GGNNCC	3 cut(s)	202, 538, 688
BspPI	GGATC	2 cut(s)	111, 617
BspT107I	GGYRCC	1 cut(s)	686
BspTI	CTTAAG	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	426
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	4 cut(s)	94, 103, 208, 622
Bst4CI	ACNGT	1 cut(s)	173
BstAFI	CTTAAG	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	535
BstDEI	CTNAG	1 cut(s)	124
BstKTI	GATC	4 cut(s)	97, 106, 211, 625
BstMAI	GTCTC	2 cut(s)	262, 395
BstMBI	GATC	4 cut(s)	94, 103, 208, 622
BstMWI	GCNNNNNNNGC	3 cut(s)	525, 534, 567
BstV1I	GCAGC	1 cut(s)	582
BstXI	CCANNNNNNTGG	1 cut(s)	153
BsuRI	GGCC	3 cut(s)	137, 399, 537
BtsIMutI	CAGTG	1 cut(s)	50
Cac8I	GCNNGC	1 cut(s)	535
Cfr13I	GGNCC	2 cut(s)	200, 536
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	326
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	1 cut(s)	124
DpnI	GATC	4 cut(s)	96, 105, 210, 624
DpnII	GATC	4 cut(s)	94, 103, 208, 622
EaeI	YGGCCR	1 cut(s)	397
Ecl136II	GAGCTC	1 cut(s)	755
Eco147I	AGGCCT	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	757
Eco47I	GGWCC	1 cut(s)	200
Eco53kI	GAGCTC	1 cut(s)	755
EcoICRI	GAGCTC	1 cut(s)	755
EcoRI	GAATTC	1 cut(s)	128
EcoT38I	GRGCYC	1 cut(s)	757
Esp3I	CGTCTC	1 cut(s)	395
FaiI	YATR	5 cut(s)	59, 226, 283, 485, 692
FaqI	GGGAC	1 cut(s)	186
FauI	CCCGC	1 cut(s)	732
FbaI	TGATCA	1 cut(s)	94
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	1 cut(s)	571
FriOI	GRGCYC	1 cut(s)	757
Fsp4HI	GCNGC	1 cut(s)	571
FspBI	CTAG	2 cut(s)	371, 453
GluI	GCNGC	1 cut(s)	571
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	3 cut(s)	137, 399, 537
HgaI	GACGC	1 cut(s)	119
HinfI	GANTC	2 cut(s)	213, 433
HphI	GGTGA	6 cut(s)	135, 262, 280, 350, 580, 782
Hpy166II	GTNNAC	4 cut(s)	326, 445, 598, 726
Hpy188I	TCNGA	2 cut(s)	169, 438
Hpy188III	TCNNGA	4 cut(s)	107, 203, 332, 371
Hpy8I	GTNNAC	4 cut(s)	326, 445, 598, 726
HpyAV	CCTTC	4 cut(s)	179, 361, 616, 773
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4IV	ACGT	1 cut(s)	777
HpyCH4V	TGCA	2 cut(s)	561, 714
HpyF10VI	GCNNNNNNNGC	3 cut(s)	525, 534, 567
HpyF3I	CTNAG	1 cut(s)	124
HpySE526I	ACGT	1 cut(s)	777
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	4 cut(s)	94, 103, 208, 622
Lsp1109I	GCAGC	1 cut(s)	582
MaeI	CTAG	2 cut(s)	371, 453
MaeII	ACGT	1 cut(s)	777
MaeIII	GTNAC	2 cut(s)	107, 469
MalI	GATC	4 cut(s)	96, 105, 210, 624
MboI	GATC	4 cut(s)	94, 103, 208, 622
MboII	GAAGA	2 cut(s)	16, 667
MhlI	GDGCHC	1 cut(s)	757
MluCI	AATT	7 cut(s)	128, 151, 408, 457, 627, 733, 767
MlyI	GAGTC	1 cut(s)	222
MmeI	TCCRAC	1 cut(s)	630
MseI	TTAA	2 cut(s)	245, 744
MslI	CAYNNNNRTG	1 cut(s)	593
MspCI	CTTAAG	1 cut(s)	244
MwoI	GCNNNNNNNGC	3 cut(s)	525, 534, 567
NdeII	GATC	4 cut(s)	94, 103, 208, 622
NlaIV	GGNNCC	3 cut(s)	202, 538, 688
NmuCI	GTSAC	1 cut(s)	107
OliI	CACNNNNGTG	1 cut(s)	593
PceI	AGGCCT	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	433
PkrI	GCNGC	1 cut(s)	572
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
Psp124BI	GAGCTC	1 cut(s)	757
PspN4I	GGNNCC	3 cut(s)	202, 538, 688
PspPI	GGNCC	2 cut(s)	200, 536
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
RseI	CAYNNNNRTG	1 cut(s)	593
SacI	GAGCTC	1 cut(s)	757
SaqAI	TTAA	2 cut(s)	245, 744
SatI	GCNGC	1 cut(s)	571
Sau3AI	GATC	4 cut(s)	94, 103, 208, 622
Sau96I	GGNCC	2 cut(s)	200, 536
SchI	GAGTC	1 cut(s)	222
SduI	GDGCHC	1 cut(s)	757
SinI	GGWCC	1 cut(s)	200
SmiMI	CAYNNNNRTG	1 cut(s)	593
SmlI	CTYRAG	2 cut(s)	244, 376
SmoI	CTYRAG	2 cut(s)	244, 376
Sse9I	AATT	7 cut(s)	128, 151, 408, 457, 627, 733, 767
SseBI	AGGCCT	1 cut(s)	137
SsiI	CCGC	2 cut(s)	249, 739
SspMI	CTAG	2 cut(s)	371, 453
SstI	GAGCTC	1 cut(s)	757
StuI	AGGCCT	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	173
TaiI	ACGT	1 cut(s)	780
TaqI	TCGA	1 cut(s)	211
TasI	AATT	7 cut(s)	128, 151, 408, 457, 627, 733, 767
TatI	WGTACW	1 cut(s)	325
TfiI	GAWTC	1 cut(s)	433
Tru1I	TTAA	2 cut(s)	245, 744
Tru9I	TTAA	2 cut(s)	245, 744
TscAI	CASTG	1 cut(s)	50
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	1 cut(s)	570
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	4 cut(s)	17, 43, 402, 435
TspRI	CASTG	1 cut(s)	50
Vha464I	CTTAAG	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	200
XapI	RAATTY	2 cut(s)	128, 733
XbaI	TCTAGA	1 cut(s)	370
XmiI	GTMKAC	1 cut(s)	444
XspI	CTAG	2 cut(s)	371, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.