Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001554

Physical Location & Seq

Genomic Coordinates Reverse (-)

52436766 .. 52438798

Gene Structure 2033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0409700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGCTTAGTTCAAAATCTCTGAACATGAGGAATATACTTGTCAACCTTTTGATGTTTTACTCTATTGCTTCCTCAAATTTTAGTTTTGGACATGGGCAAACAACTTTTAATGTGCTGGATTATGGTGCTGTTGGAGATGGCGATACAGATGATTCTGAAGCATTCTTAAAAGCATGGAATGCTTCATGTTCAACCAACGCTAGTAACGGGACACCAACACTAGTAATACCAGCAGAGAGAACATTCCTTTTGCAACCTACCATCTTCTCAGGTTCTTGCAATTCTAACGACGGTATCCGGGTCGAGATTCTGGGGAAAATTGTGGCACCCAAAAATCCAGATGAATGGAAAGGGTGTGTAGAATCTTGGTTATCTTTTGGAAATTTGAGCAACCTCATAATAAATGGAACGGGAGAAATTAATGGCCAAGGTTCACTTTGGTGGAGCAATATTACCACCCAACCTAACAAAGCTCTACACCTTTTCAAATGCAGTAATCTTCAGTTAAGTGGACTCACACATATTGACAGTCCAAAGGCTCATATTAGCATCAACCGTAGCAATAATGTCACCGTCTCTAATCTTCATATTCGTGCACCTGAAGATAGTCCTAACACAGATGGTATTGACATCTCTGTCTCAACACATGTCAATATTCATGACTCAACAATAGAAACTGGTGATGATTGTATTGCCATTAATAATGGTTCATCCTTTATCAATATCACCAATATTGCATGTGGACCTGGTCATGGAATTAGTGTGGGAAGTTTAGGTGTGAATGAAAGTTATCAGACGGTAGAAGAGATACAAGTACGAAATTGTAGTTTCAACGGTACACAAAATGGAGCGAGAATTAAGACATGGCAGGGTGGTTCTGGATATGCTAGGAAGATAACATTTGAACACATAACACTAATAGCCGCGAAGCATCCTATCATCATTGACCAACATTACTGTAATGGAAAGCACGACTGTGAAAATTCGACTCAGGCAGTAGAAGTGAGTGATGTCACATATAGTGATTTTCAAGGAACTTCTTCAAGTGATCGAGGAGGCGATTGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001653 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006885 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032502 GO:0032989 GO:0036211 GO:0038023 GO:0040007 GO:0042592 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045851 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051716 GO:0055067 GO:0055080 GO:0060089 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0098771 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

356

Amino Acids

38.31

Weight (kDa)

5.27

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pect-lyase_RHGA_epim	PF12708	36 - 283	6.4e-09	Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28	PF00295	72 - 349	2.7e-78	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17250 AT1G72300
fragaria_vesca	FvH4_6g35570 FvH4_6g35570 FvH4_6g35570 FvH4_6g36780 FvH4_6g36780 FvH4_6g36790 FvH4_6g36810
malus_domestica	MD02G1111300.v1.1 MD09G1166700.v1.1 MD09G1166900.v1.1 MD09G1171000.v1.1 MD17G1155900.v1.1 MD17G1156200.v1.1
prunus_persica	Prupe.3G024400_v2.0.a1 Prupe.3G024600_v2.0.a1 Prupe.3G024700_v2.0.a1 Prupe.3G029500_v2.0.a1
pyrus_communis	pycom09g08450 pycom17g14870 pycom17g14920
rosa_chinensis	RchiOBHm_Chr2g0147291 RchiOBHm_Chr2g0149181 RchiOBHm_Chr2g0149201
rosa_laevigata	RLG00000020249 RLG00000020378 RLG00000020379 RLG00000020380 RLG00000020381 RLG00000020382
rosa_multiflora	Rmu_co8376871.1_g000001 Rmu_sc0001615.1_g000001 Rmu_sc0001615.1_g000002 Rmu_sc0001880.1_g000001 Rmu_sc0008040.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098330 Rroxscaffold_2G00098340 Rroxscaffold_2G00099610
rosa_rugosa	Rorug02G0399000 Rorug02G0409500 Rorug02G0409600 Rorug02G0409700
rosa_samantha	Rh2AG456100 Rh2BG468800 Rh2CG443700 Rh2DG478100
rosa_wichuraiana	Rw2G037320 Rw2G038220 Rw2G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	635
AccB1I	GGYRCC	1 cut(s)	325
AccII	CGCG	1 cut(s)	926
AciI	CCGC	1 cut(s)	924
AcoI	YGGCCR	1 cut(s)	424
AcsI	RAATTY	3 cut(s)	76, 382, 982
AcuI	CTGAAG	3 cut(s)	177, 485, 621
AfaI	GTAC	2 cut(s)	816, 838
AfiI	CCNNNNNNNGG	1 cut(s)	752
AflIII	ACRYGT	1 cut(s)	646
AgsI	TTSAA	7 cut(s)	12, 192, 487, 832, 905, 1031, 1044
AhlI	ACTAGT	1 cut(s)	220
AjnI	CCWGG	1 cut(s)	745
AleI	CACNNNNGTG	2 cut(s)	439, 975
AluBI	AGCT	1 cut(s)	473
AluI	AGCT	1 cut(s)	473
Alw21I	GWGCWC	1 cut(s)	598
Alw26I	GTCTC	2 cut(s)	580, 643
Alw44I	GTGCAC	1 cut(s)	594
AoxI	GGCC	1 cut(s)	424
ApaLI	GTGCAC	1 cut(s)	594
ApoI	RAATTY	3 cut(s)	76, 382, 982
AseI	ATTAAT	2 cut(s)	420, 699
Asp700I	GAANNNNTTC	1 cut(s)	1039
AspS9I	GGNCC	1 cut(s)	743
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	3 cut(s)	562, 692, 718
AvaII	GGWCC	1 cut(s)	743
BaeGI	GKGCMC	1 cut(s)	598
BaeI	ACNNNNGTAYC	2 cut(s)	277, 310
BalI	TGGCCA	1 cut(s)	426
BanI	GGYRCC	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	598
BccI	CCATC	3 cut(s)	131, 269, 614
BciT130I	CCWGG	1 cut(s)	747
BciVI	GTATCC	1 cut(s)	305
BcnI	CCSGG	1 cut(s)	299
BcoDI	GTCTC	2 cut(s)	580, 643
BcuI	ACTAGT	1 cut(s)	220
BfaI	CTAG	3 cut(s)	201, 221, 888
BfuI	GTATCC	1 cut(s)	305
BisI	GCNGC	1 cut(s)	924
BlsI	GCNGC	1 cut(s)	925
Bme1390I	CCNGG	2 cut(s)	299, 747
Bme18I	GGWCC	1 cut(s)	743
BmgT120I	GGNCC	1 cut(s)	743
BmiI	GGNNCC	1 cut(s)	327
BmrFI	CCNGG	2 cut(s)	299, 747
BmsI	GCATC	2 cut(s)	558, 940
BpuMI	CCSGG	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	427
Bsc4I	CCNNNNNNNGG	1 cut(s)	752
Bse1I	ACTGG	1 cut(s)	682
BseBI	CCWGG	1 cut(s)	747
BseDI	CCNNGG	1 cut(s)	427
BseGI	GGATG	2 cut(s)	710, 931
BseLI	CCNNNNNNNGG	1 cut(s)	752
BseMII	CTCAG	2 cut(s)	282, 1004
BseNI	ACTGG	1 cut(s)	682
BseRI	GAGGAG	1 cut(s)	1068
BseSI	GKGCMC	1 cut(s)	598
Bsh1236I	CGCG	1 cut(s)	926
BshFI	GGCC	1 cut(s)	426
BshNI	GGYRCC	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	598
BsiSI	CCGG	1 cut(s)	298
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	752
BsmAI	GTCTC	2 cut(s)	580, 643
BsmBI	CGTCTC	1 cut(s)	580
BsmFI	GGGAC	1 cut(s)	223
BsmI	GAATGC	2 cut(s)	161, 184
BsnI	GGCC	1 cut(s)	426
Bsp1286I	GDGCHC	1 cut(s)	598
Bsp143I	GATC	1 cut(s)	1048
BspACI	CCGC	1 cut(s)	924
BspANI	GGCC	1 cut(s)	426
BspCNI	CTCAG	2 cut(s)	281, 1003
BspFNI	CGCG	1 cut(s)	926
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	1 cut(s)	327
BspT107I	GGYRCC	1 cut(s)	325
BsrI	ACTGG	1 cut(s)	682
BssECI	CCNNGG	1 cut(s)	427
BssMI	GATC	1 cut(s)	1048
BssT1I	CCWWGG	1 cut(s)	427
Bst2UI	CCWGG	1 cut(s)	747
Bst4CI	ACNGT	8 cut(s)	293, 530, 557, 574, 799, 836, 959, 977
Bst6I	CTCTTC	1 cut(s)	798
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstDEI	CTNAG	3 cut(s)	5, 268, 990
BstF5I	GGATG	2 cut(s)	710, 931
BstFNI	CGCG	1 cut(s)	926
BstKTI	GATC	1 cut(s)	1051
BstMAI	GTCTC	2 cut(s)	580, 643
BstMBI	GATC	1 cut(s)	1048
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	1 cut(s)	747
BstNSI	RCATGY	2 cut(s)	650, 741
BstSCI	CCNGG	2 cut(s)	297, 745
BstSLI	GKGCMC	1 cut(s)	598
BstUI	CGCG	1 cut(s)	926
BstXI	CCANNNNNNTGG	1 cut(s)	345
BsuI	GTATCC	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	426
BtsCI	GGATG	2 cut(s)	710, 931
CciI	TCATGA	1 cut(s)	658
Cfr13I	GGNCC	1 cut(s)	743
CsiI	ACCWGGT	1 cut(s)	745
Csp6I	GTAC	2 cut(s)	815, 837
CviAII	CATG	9 cut(s)	25, 92, 174, 186, 647, 659, 738, 752, 864
CviJI	RGCY	4 cut(s)	426, 473, 539, 923
CviKI_1	RGCY	4 cut(s)	426, 473, 539, 923
CviQI	GTAC	2 cut(s)	815, 837
DdeI	CTNAG	3 cut(s)	5, 268, 990
DpnI	GATC	1 cut(s)	1050
DpnII	GATC	1 cut(s)	1048
DrdI	GACNNNNNNGTC	1 cut(s)	635
DseDI	GACNNNNNNGTC	1 cut(s)	635
EaeI	YGGCCR	1 cut(s)	424
Eam1104I	CTCTTC	1 cut(s)	798
EarI	CTCTTC	1 cut(s)	798
Eco130I	CCWWGG	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	743
Eco57I	CTGAAG	3 cut(s)	177, 485, 621
EcoRII	CCWGG	1 cut(s)	745
EcoT14I	CCWWGG	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	427
Esp3I	CGTCTC	1 cut(s)	580
FaeI	CATG	9 cut(s)	28, 95, 177, 189, 650, 662, 741, 755, 867
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	9 cut(s)	24, 91, 173, 185, 646, 658, 737, 751, 863
Fnu4HI	GCNGC	1 cut(s)	924
FokI	GGATG	2 cut(s)	697, 918
Fsp4HI	GCNGC	1 cut(s)	924
FspBI	CTAG	3 cut(s)	201, 221, 888
GluI	GCNGC	1 cut(s)	924
HaeIII	GGCC	1 cut(s)	426
HapII	CCGG	1 cut(s)	298
Hin1II	CATG	9 cut(s)	28, 95, 177, 189, 650, 662, 741, 755, 867
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	6 cut(s)	152, 307, 362, 513, 662, 988
HpaII	CCGG	1 cut(s)	298
HphI	GGTGA	3 cut(s)	562, 692, 718
Hpy166II	GTNNAC	6 cut(s)	43, 434, 512, 596, 743, 839
Hpy188I	TCNGA	3 cut(s)	21, 157, 795
Hpy188III	TCNNGA	4 cut(s)	304, 338, 659, 879
Hpy8I	GTNNAC	6 cut(s)	43, 434, 512, 596, 743, 839
Hpy99I	CGWCG	1 cut(s)	293
HpyCH4III	ACNGT	8 cut(s)	293, 530, 557, 574, 799, 836, 959, 977
HpyCH4V	TGCA	5 cut(s)	253, 279, 492, 596, 737
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	3 cut(s)	5, 268, 990
Hsp92II	CATG	9 cut(s)	28, 95, 177, 189, 650, 662, 741, 755, 867
Kzo9I	GATC	1 cut(s)	1048
LmnI	GCTCC	2 cut(s)	444, 848
LweI	GCATC	2 cut(s)	558, 940
MabI	ACCWGGT	1 cut(s)	745
MaeI	CTAG	3 cut(s)	201, 221, 888
MaeIII	GTNAC	3 cut(s)	203, 568, 1012
MalI	GATC	1 cut(s)	1050
MboI	GATC	1 cut(s)	1048
MboII	GAAGA	7 cut(s)	256, 491, 575, 614, 815, 904, 1032
MhlI	GDGCHC	1 cut(s)	598
MlsI	TGGCCA	1 cut(s)	426
MluCI	AATT	9 cut(s)	76, 280, 318, 382, 417, 756, 820, 855, 982
MluNI	TGGCCA	1 cut(s)	426
MlyI	GAGTC	3 cut(s)	507, 656, 982
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	5 cut(s)	21, 82, 404, 1046, 1049
Mox20I	TGGCCA	1 cut(s)	426
MroXI	GAANNNNTTC	1 cut(s)	1039
MscI	TGGCCA	1 cut(s)	426
MseI	TTAA	7 cut(s)	108, 167, 420, 506, 699, 858, 1069
MslI	CAYNNNNRTG	3 cut(s)	439, 591, 975
Msp20I	TGGCCA	1 cut(s)	426
MspI	CCGG	1 cut(s)	298
MspR9I	CCNGG	2 cut(s)	299, 747
Mva1269I	GAATGC	2 cut(s)	161, 184
MvaI	CCWGG	1 cut(s)	747
MvnI	CGCG	1 cut(s)	926
MwoI	GCNNNNNNNGC	1 cut(s)	179
NciI	CCSGG	1 cut(s)	299
NdeII	GATC	1 cut(s)	1048
NlaIII	CATG	9 cut(s)	28, 95, 177, 189, 650, 662, 741, 755, 867
NlaIV	GGNNCC	1 cut(s)	327
NmuCI	GTSAC	2 cut(s)	568, 1012
NspI	RCATGY	2 cut(s)	650, 741
OliI	CACNNNNGTG	2 cut(s)	439, 975
PagI	TCATGA	1 cut(s)	658
PciI	ACATGT	1 cut(s)	646
PctI	GAATGC	2 cut(s)	161, 184
PdmI	GAANNNNTTC	1 cut(s)	1039
PfeI	GAWTC	3 cut(s)	152, 307, 362
PflFI	GACNNNGTC	1 cut(s)	747
PkrI	GCNGC	1 cut(s)	925
PleI	GAGTC	3 cut(s)	507, 656, 982
PpsI	GAGTC	3 cut(s)	507, 656, 982
PscI	ACATGT	1 cut(s)	646
PshBI	ATTAAT	2 cut(s)	420, 699
Psp6I	CCWGG	1 cut(s)	745
PspGI	CCWGG	1 cut(s)	745
PspN4I	GGNNCC	1 cut(s)	327
PspPI	GGNCC	1 cut(s)	743
PsyI	GACNNNGTC	1 cut(s)	747
RsaI	GTAC	2 cut(s)	816, 838
RsaNI	GTAC	2 cut(s)	815, 837
RseI	CAYNNNNRTG	3 cut(s)	439, 591, 975
SaqAI	TTAA	7 cut(s)	108, 167, 420, 506, 699, 858, 1069
SatI	GCNGC	1 cut(s)	924
Sau3AI	GATC	1 cut(s)	1048
Sau96I	GGNCC	1 cut(s)	743
SchI	GAGTC	3 cut(s)	507, 656, 982
ScrFI	CCNGG	2 cut(s)	299, 747
SduI	GDGCHC	1 cut(s)	598
SexAI	ACCWGGT	1 cut(s)	745
SfaNI	GCATC	2 cut(s)	558, 940
SinI	GGWCC	1 cut(s)	743
SmiMI	CAYNNNNRTG	3 cut(s)	439, 591, 975
SpeI	ACTAGT	1 cut(s)	220
Sse9I	AATT	9 cut(s)	76, 280, 318, 382, 417, 756, 820, 855, 982
SsiI	CCGC	1 cut(s)	924
SspI	AATATT	3 cut(s)	451, 655, 733
SspMI	CTAG	3 cut(s)	201, 221, 888
StyD4I	CCNGG	2 cut(s)	297, 745
StyI	CCWWGG	1 cut(s)	427
TaaI	ACNGT	8 cut(s)	293, 530, 557, 574, 799, 836, 959, 977
TaqI	TCGA	3 cut(s)	303, 986, 1051
TasI	AATT	9 cut(s)	76, 280, 318, 382, 417, 756, 820, 855, 982
TauI	GCSGC	1 cut(s)	926
TfiI	GAWTC	3 cut(s)	152, 307, 362
Tru1I	TTAA	7 cut(s)	108, 167, 420, 506, 699, 858, 1069
Tru9I	TTAA	7 cut(s)	108, 167, 420, 506, 699, 858, 1069
TseFI	GTSAC	2 cut(s)	568, 1012
Tsp45I	GTSAC	2 cut(s)	568, 1012
TspDTI	ATGAA	6 cut(s)	174, 357, 575, 647, 699, 798
Tth111I	GACNNNGTC	1 cut(s)	747
VneI	GTGCAC	1 cut(s)	594
VpaK11BI	GGWCC	1 cut(s)	743
VspI	ATTAAT	2 cut(s)	420, 699
XapI	RAATTY	3 cut(s)	76, 382, 982
XceI	RCATGY	2 cut(s)	650, 741
XmnI	GAANNNNTTC	1 cut(s)	1039
XspI	CTAG	3 cut(s)	201, 221, 888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.