Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001554

Physical Location & Seq

Genomic Coordinates Reverse (-)

9032226 .. 9032786

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1111300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGAAACACGACAAGCAGGAGGTGAAGGTCCCAGCAATACCAACACCACCAACCTTTCATCTTCTCTACTATTTGGGTCAATGGATTCTCGTCCTTCTCATTCTTCCTTGCTCTGCCTTTGCTGCCTGTGATCGGCTCGATCGCGACACTCTTTTGTCCTTGCCCTTCAACACACCGTTGAATTGGTCTGCTTCCACTGACTACTGCCTTTGGGATGGAGTCAACTGCGACCCGGTTGAGCACAGCTGCGTCGTCCGGCATTCTCTGCCCAAGAGAGGCTTATCCGGTGTCGTCTCTCCGTCCATCATGAACCTCACCAATCTCAGGATCCTCGAGCTTTATTCGAACAACTTCTTTGGGCAAATCCCTGGGGATATTGGTAACCTTTTCAGGTTGGAGAATCTGCTCCTCCACATCAACAACTTCACAGGTGCCTTGCCCCCGTCCCTCACCAACTGCACAAATCTATCCACCTTGAATTTGCGGGTTAACAACTTAAATGGACAGCTCTCTGCCTTCAATTTTTCCACTCCCTCGAGCTCGTTGACATTGCCACCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001653 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006885 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032502 GO:0032989 GO:0036211 GO:0038023 GO:0040007 GO:0042592 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045851 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051716 GO:0055067 GO:0055080 GO:0060089 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0098771 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

187

Amino Acids

20.62

Weight (kDa)

6.49

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17250 AT1G72300
fragaria_vesca	FvH4_6g35570 FvH4_6g35570 FvH4_6g35570 FvH4_6g36780 FvH4_6g36780 FvH4_6g36790 FvH4_6g36810
malus_domestica	MD02G1111300.v1.1 MD09G1166700.v1.1 MD09G1166900.v1.1 MD09G1171000.v1.1 MD17G1155900.v1.1 MD17G1156200.v1.1
prunus_persica	Prupe.3G024400_v2.0.a1 Prupe.3G024600_v2.0.a1 Prupe.3G024700_v2.0.a1 Prupe.3G029500_v2.0.a1
pyrus_communis	pycom09g08450 pycom17g14870 pycom17g14920
rosa_chinensis	RchiOBHm_Chr2g0147291 RchiOBHm_Chr2g0149181 RchiOBHm_Chr2g0149201
rosa_laevigata	RLG00000020249 RLG00000020378 RLG00000020379 RLG00000020380 RLG00000020381 RLG00000020382
rosa_multiflora	Rmu_co8376871.1_g000001 Rmu_sc0001615.1_g000001 Rmu_sc0001615.1_g000002 Rmu_sc0001880.1_g000001 Rmu_sc0008040.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098330 Rroxscaffold_2G00098340 Rroxscaffold_2G00099610
rosa_rugosa	Rorug02G0399000 Rorug02G0409500 Rorug02G0409600 Rorug02G0409700
rosa_samantha	Rh2AG456100 Rh2BG468800 Rh2CG443700 Rh2DG478100
rosa_wichuraiana	Rw2G037320 Rw2G038220 Rw2G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	431
AccII	CGCG	1 cut(s)	144
AciI	CCGC	1 cut(s)	484
AclWI	GGATC	2 cut(s)	322, 335
AcsI	RAATTY	1 cut(s)	478
AfiI	CCNNNNNNNGG	3 cut(s)	132, 275, 324
AgsI	TTSAA	4 cut(s)	169, 181, 478, 520
AjnI	CCWGG	1 cut(s)	367
AluBI	AGCT	4 cut(s)	246, 337, 508, 540
AluI	AGCT	4 cut(s)	246, 337, 508, 540
Alw21I	GWGCWC	2 cut(s)	243, 542
Alw26I	GTCTC	1 cut(s)	298
AlwI	GGATC	2 cut(s)	322, 335
Ama87I	CYCGRG	2 cut(s)	332, 535
ApeKI	GCWGC	2 cut(s)	122, 246
ApoI	RAATTY	1 cut(s)	478
Asp700I	GAANNNNTTC	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	28
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	3 cut(s)	34, 307, 442
AsuII	TTCGAA	1 cut(s)	344
AvaI	CYCGRG	2 cut(s)	332, 535
AvaII	GGWCC	1 cut(s)	28
BamHI	GGATCC	1 cut(s)	327
BanI	GGYRCC	1 cut(s)	431
BanII	GRGCYC	1 cut(s)	542
Bbv12I	GWGCWC	2 cut(s)	243, 542
BbvI	GCAGC	2 cut(s)	109, 233
BccI	CCATC	2 cut(s)	209, 311
BciT130I	CCWGG	1 cut(s)	369
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	298
BisI	GCNGC	2 cut(s)	123, 247
BlsI	GCNGC	2 cut(s)	124, 248
Bme1390I	CCNGG	2 cut(s)	233, 369
Bme18I	GGWCC	1 cut(s)	28
BmeT110I	CYCGRG	2 cut(s)	332, 535
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	3 cut(s)	30, 329, 433
BmrFI	CCNGG	2 cut(s)	233, 369
Bpu14I	TTCGAA	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	233
BsaJI	CCNNGG	2 cut(s)	367, 368
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	3 cut(s)	132, 275, 324
Bse3DI	GCAATG	1 cut(s)	548
BseBI	CCWGG	1 cut(s)	369
BseDI	CCNNGG	2 cut(s)	367, 368
BseGI	GGATG	1 cut(s)	220
BseLI	CCNNNNNNNGG	3 cut(s)	132, 275, 324
BseMI	GCAATG	1 cut(s)	548
BseMII	CTCAG	1 cut(s)	337
BseRI	GAGGAG	1 cut(s)	398
BseXI	GCAGC	2 cut(s)	109, 233
BseYI	CCCAGC	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	442
Bsh1236I	CGCG	1 cut(s)	144
Bsh1285I	CGRYCG	1 cut(s)	142
BshNI	GGYRCC	1 cut(s)	431
BsiEI	CGRYCG	1 cut(s)	142
BsiHKAI	GWGCWC	2 cut(s)	243, 542
BsiHKCI	CYCGRG	2 cut(s)	332, 535
BsiSI	CCGG	3 cut(s)	233, 256, 285
BslFI	GGGAC	2 cut(s)	14, 430
BslI	CCNNNNNNNGG	3 cut(s)	132, 275, 324
BsmAI	GTCTC	1 cut(s)	298
BsmBI	CGTCTC	1 cut(s)	298
BsmFI	GGGAC	2 cut(s)	14, 430
BsmI	GAATGC	1 cut(s)	259
BsoBI	CYCGRG	2 cut(s)	332, 535
Bsp119I	TTCGAA	1 cut(s)	344
Bsp1286I	GDGCHC	2 cut(s)	243, 542
Bsp143I	GATC	3 cut(s)	130, 139, 327
Bsp68I	TCGCGA	1 cut(s)	144
BspACI	CCGC	1 cut(s)	484
BspCNI	CTCAG	1 cut(s)	336
BspFNI	CGCG	1 cut(s)	144
BspHI	TCATGA	1 cut(s)	306
BspLI	GGNNCC	3 cut(s)	30, 329, 433
BspPI	GGATC	2 cut(s)	322, 335
BspT104I	TTCGAA	1 cut(s)	344
BspT107I	GGYRCC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	548
BssECI	CCNNGG	2 cut(s)	367, 368
BssMI	GATC	3 cut(s)	130, 139, 327
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	2 cut(s)	177, 558
BstAPI	GCANNNNNTGC	1 cut(s)	265
BstBI	TTCGAA	1 cut(s)	344
BstDEI	CTNAG	1 cut(s)	323
BstEII	GGTNACC	1 cut(s)	380
BstF5I	GGATG	1 cut(s)	220
BstFNI	CGCG	1 cut(s)	144
BstKTI	GATC	3 cut(s)	133, 142, 330
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	3 cut(s)	130, 139, 327
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 265
BstNI	CCWGG	1 cut(s)	369
BstPI	GGTNACC	1 cut(s)	380
BstSCI	CCNGG	2 cut(s)	231, 367
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	2 cut(s)	109, 233
BstX2I	RGATCY	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	220
BtsIMutI	CAGTG	1 cut(s)	195
BtuMI	TCGCGA	1 cut(s)	144
CciI	TCATGA	1 cut(s)	306
Cfr13I	GGNCC	1 cut(s)	28
CseI	GACGC	1 cut(s)	238
CviAII	CATG	1 cut(s)	307
CviJI	RGCY	6 cut(s)	136, 246, 279, 337, 508, 540
CviKI_1	RGCY	6 cut(s)	136, 246, 279, 337, 508, 540
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	3 cut(s)	132, 141, 329
DpnII	GATC	3 cut(s)	130, 139, 327
Ecl136II	GAGCTC	1 cut(s)	540
Eco24I	GRGCYC	1 cut(s)	542
Eco47I	GGWCC	1 cut(s)	28
Eco53kI	GAGCTC	1 cut(s)	540
Eco88I	CYCGRG	2 cut(s)	332, 535
Eco91I	GGTNACC	1 cut(s)	380
EcoICRI	GAGCTC	1 cut(s)	540
EcoO109I	RGGNCCY	1 cut(s)	28
EcoO65I	GGTNACC	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	367
EcoT38I	GRGCYC	1 cut(s)	542
Esp3I	CGTCTC	1 cut(s)	298
FaeI	CATG	1 cut(s)	310
FaiI	YATR	1 cut(s)	308
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	2 cut(s)	14, 430
FatI	CATG	1 cut(s)	306
FauI	CCCGC	1 cut(s)	477
Fnu4HI	GCNGC	2 cut(s)	123, 247
FokI	GGATG	1 cut(s)	227
FriOI	GRGCYC	1 cut(s)	542
Fsp4HI	GCNGC	2 cut(s)	123, 247
GluI	GCNGC	2 cut(s)	123, 247
GsaI	CCCAGC	1 cut(s)	35
HapII	CCGG	3 cut(s)	233, 256, 285
HgaI	GACGC	1 cut(s)	238
Hin1II	CATG	1 cut(s)	310
HincII	GTYRAC	3 cut(s)	223, 490, 546
HindII	GTYRAC	3 cut(s)	223, 490, 546
HinfI	GANTC	3 cut(s)	85, 219, 400
HpaI	GTTAAC	1 cut(s)	490
HpaII	CCGG	3 cut(s)	233, 256, 285
HphI	GGTGA	3 cut(s)	34, 307, 442
Hpy166II	GTNNAC	3 cut(s)	223, 490, 546
Hpy188III	TCNNGA	3 cut(s)	143, 307, 325
Hpy8I	GTNNAC	3 cut(s)	223, 490, 546
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	4 cut(s)	19, 104, 175, 526
HpyCH4III	ACNGT	2 cut(s)	177, 558
HpyCH4V	TGCA	1 cut(s)	459
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 265
HpyF3I	CTNAG	1 cut(s)	323
Hsp92II	CATG	1 cut(s)	310
KspAI	GTTAAC	1 cut(s)	490
Kzo9I	GATC	3 cut(s)	130, 139, 327
LmnI	GCTCC	1 cut(s)	411
Lsp1109I	GCAGC	2 cut(s)	109, 233
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	3 cut(s)	132, 141, 329
MboI	GATC	3 cut(s)	130, 139, 327
MboII	GAAGA	2 cut(s)	53, 95
MflI	RGATCY	1 cut(s)	327
MhlI	GDGCHC	2 cut(s)	243, 542
MluCI	AATT	3 cut(s)	181, 478, 520
MlyI	GAGTC	1 cut(s)	228
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	7 cut(s)	13, 269, 323, 341, 419, 458, 544
MroXI	GAANNNNTTC	1 cut(s)	350
MseI	TTAA	2 cut(s)	489, 497
MspA1I	CMGCKG	1 cut(s)	246
MspI	CCGG	3 cut(s)	233, 256, 285
MspR9I	CCNGG	2 cut(s)	233, 369
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	369
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	122, 265
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	3 cut(s)	130, 139, 327
NlaIII	CATG	1 cut(s)	310
NlaIV	GGNNCC	3 cut(s)	30, 329, 433
NruI	TCGCGA	1 cut(s)	144
NspV	TTCGAA	1 cut(s)	344
PaeR7I	CTCGAG	2 cut(s)	332, 535
PagI	TCATGA	1 cut(s)	306
PasI	CCCWGGG	1 cut(s)	368
PctI	GAATGC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	2 cut(s)	85, 400
PkrI	GCNGC	2 cut(s)	124, 248
Ple19I	CGATCG	1 cut(s)	142
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PpuMI	RGGWCCY	1 cut(s)	28
Psp124BI	GAGCTC	1 cut(s)	542
Psp5II	RGGWCCY	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	367
PspEI	GGTNACC	1 cut(s)	380
PspFI	CCCAGC	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	3 cut(s)	30, 329, 433
PspPI	GGNCC	1 cut(s)	28
PspPPI	RGGWCCY	1 cut(s)	28
PspXI	VCTCGAGB	2 cut(s)	332, 535
PsuI	RGATCY	1 cut(s)	327
PvuI	CGATCG	1 cut(s)	142
PvuII	CAGCTG	1 cut(s)	246
RruI	TCGCGA	1 cut(s)	144
SacI	GAGCTC	1 cut(s)	542
SaqAI	TTAA	2 cut(s)	489, 497
SatI	GCNGC	2 cut(s)	123, 247
Sau3AI	GATC	3 cut(s)	130, 139, 327
Sau96I	GGNCC	1 cut(s)	28
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	2 cut(s)	233, 369
SduI	GDGCHC	2 cut(s)	243, 542
Sfr274I	CTCGAG	2 cut(s)	332, 535
SfuI	TTCGAA	1 cut(s)	344
SinI	GGWCC	1 cut(s)	28
SlaI	CTCGAG	2 cut(s)	332, 535
SmlI	CTYRAG	2 cut(s)	332, 535
SmoI	CTYRAG	2 cut(s)	332, 535
Sse9I	AATT	3 cut(s)	181, 478, 520
SsiI	CCGC	1 cut(s)	484
SstI	GAGCTC	1 cut(s)	542
StyD4I	CCNGG	2 cut(s)	231, 367
TaaI	ACNGT	2 cut(s)	177, 558
TaqI	TCGA	4 cut(s)	138, 333, 344, 536
TasI	AATT	3 cut(s)	181, 478, 520
TfiI	GAWTC	2 cut(s)	85, 400
Tru1I	TTAA	2 cut(s)	489, 497
Tru9I	TTAA	2 cut(s)	489, 497
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	2 cut(s)	122, 246
TspDTI	ATGAA	3 cut(s)	17, 47, 323
TspGWI	ACGGA	1 cut(s)	288
TspRI	CASTG	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	28
XapI	RAATTY	1 cut(s)	478
XhoI	CTCGAG	2 cut(s)	332, 535
XmnI	GAANNNNTTC	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.