Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001554

Physical Location & Seq

Genomic Coordinates Reverse (-)

12652667 .. 12653710

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g14920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGTTGTCTAATAGAAAAATCATTCCCGGAGGAGATACTGACAAGACAGATTTCGAGACCATGTCTAGCCAATCTACTGTTGCTCCTGAGCTTGACAAGGATACCAGCTTAGTCATACTGTTCCCAACCAAGACCAATGAAATCAAGGATCTTAGTATAACTGAAATCTTGAAGGCGACTGACAATTTCAGTCAAGCAAACATCATCGGGTGTGGAGGTTTTGGTCTGGTTTACAGAGCAATGTTGGCAAATGGGACCAGGCTAGCTGTTAAGAAACTCTCAGGAGACTTGGGTCTGGTGGAAAGGGAATTCACAGCAGAAGTTGAGGCACTGTCCACTGCCCAACATGAGAATCTGGTTTCCCTGCAAGGTTATTGTGTGCATGATGGCGTTCGCCTATTAATGTATTCGTATATGGAGAATGGAAGTCTGGATTACTGGTTACATGAGAAAGTGGATGGTCCTTCCCAATTAGATTGGCCAATTCGACTGGATATTCTGCGAGGAGCAGGCTGTGGGTTGGCTTACATGCACCAAATATGTGAGCCGCACATTGTGCATCGTGATATCAAGTCAAGCAACATTCTCCTGGATGATAAATTTCAAGCACATGTTGCTGATTTTGGATTGTCCCGGTTGATTCTTCCATACCAGACTCATGTTACAACCGAGCTTGTTGGAACTCTTGGTTACATTCCTCCAGAGTATGGACAAGCATGGGTGGCCACTTTGAGGGGAGATATGTACAGTTTCGGGGTTGTCATGCTTGAGCTGCTAACCGGAAAAAGGCCTTTTGAGGTATGCAAGCCAAGGGGGTCAAGAGAGTTGGTTGGCTGGGTGCAGCAGATGAGGAGAGAAGGCAAACCGGAGGAAGTTTTCGATCCTTTCCTGAGAGGGAAAGGCTTTGAAGAAGAGATGCTGCAGGTTCTTGATGTTGCTTGCTTGTGTGTCAACCAGAACCCTCTTAAGAGACCTACAATCAAGGAAGTTATCAGTTGGCTGAAAGATGTAGGGACATCCCATCAACATGAAGATAAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001653 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006885 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032502 GO:0032989 GO:0036211 GO:0038023 GO:0040007 GO:0042592 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045851 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051716 GO:0055067 GO:0055080 GO:0060089 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0098771 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

348

Amino Acids

38.92

Weight (kDa)

5.36

Isoelectric Point (pI)

36.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	64 - 331	9.6e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	66 - 332	2.3e-38	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17250 AT1G72300
fragaria_vesca	FvH4_6g35570 FvH4_6g35570 FvH4_6g35570 FvH4_6g36780 FvH4_6g36780 FvH4_6g36790 FvH4_6g36810
malus_domestica	MD02G1111300.v1.1 MD09G1166700.v1.1 MD09G1166900.v1.1 MD09G1171000.v1.1 MD17G1155900.v1.1 MD17G1156200.v1.1
prunus_persica	Prupe.3G024400_v2.0.a1 Prupe.3G024600_v2.0.a1 Prupe.3G024700_v2.0.a1 Prupe.3G029500_v2.0.a1
pyrus_communis	pycom09g08450 pycom17g14870 pycom17g14920
rosa_chinensis	RchiOBHm_Chr2g0147291 RchiOBHm_Chr2g0149181 RchiOBHm_Chr2g0149201
rosa_laevigata	RLG00000020249 RLG00000020378 RLG00000020379 RLG00000020380 RLG00000020381 RLG00000020382
rosa_multiflora	Rmu_co8376871.1_g000001 Rmu_sc0001615.1_g000001 Rmu_sc0001615.1_g000002 Rmu_sc0001880.1_g000001 Rmu_sc0008040.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098330 Rroxscaffold_2G00098340 Rroxscaffold_2G00099610
rosa_rugosa	Rorug02G0399000 Rorug02G0409500 Rorug02G0409600 Rorug02G0409700
rosa_samantha	Rh2AG456100 Rh2BG468800 Rh2CG443700 Rh2DG478100
rosa_wichuraiana	Rw2G037320 Rw2G038220 Rw2G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	913
AccB7I	CCANNNNNTGG	1 cut(s)	707
AciI	CCGC	1 cut(s)	548
AclWI	GGATC	2 cut(s)	156, 875
AcoI	YGGCCR	2 cut(s)	479, 723
AcsI	RAATTY	2 cut(s)	308, 599
AdeI	CACNNNGTG	1 cut(s)	556
AfaI	GTAC	1 cut(s)	746
AfiI	CCNNNNNNNGG	3 cut(s)	707, 732, 786
AflII	CTTAAG	1 cut(s)	965
AflIII	ACRYGT	1 cut(s)	610
AgsI	TTSAA	3 cut(s)	172, 605, 908
AjnI	CCWGG	2 cut(s)	257, 588
AluBI	AGCT	5 cut(s)	91, 108, 266, 673, 772
AluI	AGCT	5 cut(s)	91, 108, 266, 673, 772
Alw26I	GTCTC	3 cut(s)	50, 279, 964
AlwI	GGATC	2 cut(s)	156, 875
AoxI	GGCC	3 cut(s)	479, 723, 788
ApeKI	GCWGC	3 cut(s)	772, 841, 919
ApoI	RAATTY	2 cut(s)	308, 599
AseI	ATTAAT	1 cut(s)	401
AspS9I	GGNCC	2 cut(s)	255, 461
AsuC2I	CCSGG	2 cut(s)	27, 634
AsuNHI	GCTAGC	1 cut(s)	262
AvaII	GGWCC	2 cut(s)	255, 461
BalI	TGGCCA	2 cut(s)	481, 725
BbvI	GCAGC	3 cut(s)	759, 853, 906
BccI	CCATC	3 cut(s)	380, 452, 1029
BciT130I	CCWGG	2 cut(s)	259, 590
BciVI	GTATCC	1 cut(s)	94
BcnI	CCSGG	2 cut(s)	27, 634
BcoDI	GTCTC	3 cut(s)	50, 279, 964
BfaI	CTAG	3 cut(s)	66, 263, 1042
BfmI	CTRYAG	1 cut(s)	920
BfrI	CTTAAG	1 cut(s)	965
BfuAI	ACCTGC	1 cut(s)	913
BfuI	GTATCC	1 cut(s)	94
BisI	GCNGC	4 cut(s)	548, 773, 842, 920
BlsI	GCNGC	4 cut(s)	549, 774, 843, 921
Bme1390I	CCNGG	4 cut(s)	27, 259, 590, 634
Bme18I	GGWCC	2 cut(s)	255, 461
BmgT120I	GGNCC	2 cut(s)	255, 461
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	4 cut(s)	27, 259, 590, 634
BmsI	GCATC	2 cut(s)	568, 906
BmtI	GCTAGC	1 cut(s)	266
BoxI	GACNNNNGTC	1 cut(s)	291
BpmI	CTGGAG	1 cut(s)	684
Bpu10I	CCTNAGC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	788
BpuMI	CCSGG	2 cut(s)	27, 634
BsaI	GGTCTC	2 cut(s)	50, 964
BsaJI	CCNNGG	1 cut(s)	809
BsaWI	WCCGGW	2 cut(s)	779, 865
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bsc4I	CCNNNNNNNGG	3 cut(s)	707, 732, 786
Bse1I	ACTGG	2 cut(s)	443, 495
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	2 cut(s)	259, 590
BseDI	CCNNGG	1 cut(s)	809
BseGI	GGATG	3 cut(s)	463, 598, 1016
BseLI	CCNNNNNNNGG	3 cut(s)	707, 732, 786
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	3 cut(s)	78, 294, 881
BseNI	ACTGG	2 cut(s)	443, 495
BseRI	GAGGAG	3 cut(s)	45, 519, 865
BseXI	GCAGC	3 cut(s)	759, 853, 906
BseYI	CCCAGC	1 cut(s)	834
BsgI	GTGCAG	1 cut(s)	860
BshFI	GGCC	3 cut(s)	481, 725, 790
BsiSI	CCGG	4 cut(s)	27, 634, 780, 866
BslFI	GGGAC	3 cut(s)	268, 616, 1027
BslI	CCNNNNNNNGG	3 cut(s)	707, 732, 786
BsmAI	GTCTC	3 cut(s)	50, 279, 964
BsmFI	GGGAC	3 cut(s)	268, 616, 1027
BsnI	GGCC	3 cut(s)	481, 725, 790
Bso31I	GGTCTC	2 cut(s)	50, 964
Bsp1407I	TGTACA	1 cut(s)	744
Bsp143I	GATC	2 cut(s)	148, 880
BspACI	CCGC	1 cut(s)	548
BspANI	GGCC	3 cut(s)	481, 725, 790
BspCNI	CTCAG	3 cut(s)	79, 293, 882
BspLI	GGNNCC	1 cut(s)	256
BspMAI	CTGCAG	1 cut(s)	924
BspMI	ACCTGC	1 cut(s)	913
BspOI	GCTAGC	1 cut(s)	266
BspPI	GGATC	2 cut(s)	156, 875
BspTI	CTTAAG	1 cut(s)	965
BspTNI	GGTCTC	2 cut(s)	50, 964
BsrDI	GCAATG	1 cut(s)	246
BsrGI	TGTACA	1 cut(s)	744
BsrI	ACTGG	2 cut(s)	443, 495
BssECI	CCNNGG	1 cut(s)	809
BssMI	GATC	2 cut(s)	148, 880
BssT1I	CCWWGG	1 cut(s)	809
Bst2UI	CCWGG	2 cut(s)	259, 590
Bst4CI	ACNGT	4 cut(s)	79, 120, 333, 749
Bst6I	CTCTTC	1 cut(s)	906
BstAFI	CTTAAG	1 cut(s)	965
BstAPI	GCANNNNNTGC	2 cut(s)	556, 614
BstAUI	TGTACA	1 cut(s)	744
BstC8I	GCNNGC	4 cut(s)	264, 511, 806, 940
BstDEI	CTNAG	5 cut(s)	87, 109, 152, 280, 890
BstF5I	GGATG	3 cut(s)	463, 598, 1016
BstKTI	GATC	2 cut(s)	151, 883
BstMAI	GTCTC	3 cut(s)	50, 279, 964
BstMBI	GATC	2 cut(s)	148, 880
BstMWI	GCNNNNNNNGC	5 cut(s)	245, 556, 614, 722, 772
BstNI	CCWGG	2 cut(s)	259, 590
BstNSI	RCATGY	2 cut(s)	532, 614
BstPAI	GACNNNNGTC	1 cut(s)	291
BstSCI	CCNGG	4 cut(s)	25, 257, 588, 632
BstSFI	CTRYAG	1 cut(s)	920
BstV1I	GCAGC	3 cut(s)	759, 853, 906
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BsuI	GTATCC	1 cut(s)	94
BsuRI	GGCC	3 cut(s)	481, 725, 790
BtsCI	GGATG	3 cut(s)	463, 598, 1016
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	2 cut(s)	329, 336
BveI	ACCTGC	1 cut(s)	913
Cac8I	GCNNGC	4 cut(s)	264, 511, 806, 940
Cfr13I	GGNCC	2 cut(s)	255, 461
Csp6I	GTAC	1 cut(s)	745
CviQI	GTAC	1 cut(s)	745
DdeI	CTNAG	5 cut(s)	87, 109, 152, 280, 890
DpnI	GATC	2 cut(s)	150, 882
DpnII	GATC	2 cut(s)	148, 880
DraIII	CACNNNGTG	1 cut(s)	556
EaeI	YGGCCR	2 cut(s)	479, 723
Eam1104I	CTCTTC	1 cut(s)	906
EarI	CTCTTC	1 cut(s)	906
Eco130I	CCWWGG	1 cut(s)	809
Eco147I	AGGCCT	1 cut(s)	790
Eco31I	GGTCTC	2 cut(s)	50, 964
Eco32I	GATATC	1 cut(s)	568
Eco47I	GGWCC	2 cut(s)	255, 461
EcoRI	GAATTC	1 cut(s)	308
EcoRII	CCWGG	2 cut(s)	257, 588
EcoRV	GATATC	1 cut(s)	568
EcoT14I	CCWWGG	1 cut(s)	809
ErhI	CCWWGG	1 cut(s)	809
FaqI	GGGAC	3 cut(s)	268, 616, 1027
Fnu4HI	GCNGC	4 cut(s)	548, 773, 842, 920
FokI	GGATG	3 cut(s)	470, 605, 1003
Fsp4HI	GCNGC	4 cut(s)	548, 773, 842, 920
FspBI	CTAG	3 cut(s)	66, 263, 1042
GluI	GCNGC	4 cut(s)	548, 773, 842, 920
GsaI	CCCAGC	1 cut(s)	838
GsuI	CTGGAG	1 cut(s)	684
HaeIII	GGCC	3 cut(s)	481, 725, 790
HapII	CCGG	4 cut(s)	27, 634, 780, 866
HincII	GTYRAC	1 cut(s)	952
HindII	GTYRAC	1 cut(s)	952
HinfI	GANTC	3 cut(s)	352, 640, 655
HpaII	CCGG	4 cut(s)	27, 634, 780, 866
Hpy166II	GTNNAC	3 cut(s)	232, 336, 952
Hpy8I	GTNNAC	3 cut(s)	232, 336, 952
HpyAV	CCTTC	3 cut(s)	166, 474, 851
HpyCH4III	ACNGT	4 cut(s)	79, 120, 333, 749
HpyCH4V	TGCA	7 cut(s)	367, 382, 532, 559, 804, 841, 922
HpyF10VI	GCNNNNNNNGC	5 cut(s)	245, 556, 614, 722, 772
HpyF3I	CTNAG	5 cut(s)	87, 109, 152, 280, 890
Kzo9I	GATC	2 cut(s)	148, 880
LmnI	GCTCC	2 cut(s)	88, 506
Lsp1109I	GCAGC	3 cut(s)	759, 853, 906
LweI	GCATC	2 cut(s)	568, 906
MaeI	CTAG	3 cut(s)	66, 263, 1042
MaeIII	GTNAC	3 cut(s)	441, 661, 689
MalI	GATC	2 cut(s)	150, 882
MboI	GATC	2 cut(s)	148, 880
MboII	GAAGA	4 cut(s)	635, 920, 923, 1043
MflI	RGATCY	1 cut(s)	148
MlsI	TGGCCA	2 cut(s)	481, 725
MluCI	AATT	5 cut(s)	184, 308, 470, 483, 599
MluNI	TGGCCA	2 cut(s)	481, 725
MlyI	GAGTC	1 cut(s)	649
MmeI	TCCRAC	1 cut(s)	658
Mox20I	TGGCCA	2 cut(s)	481, 725
MscI	TGGCCA	2 cut(s)	481, 725
MseI	TTAA	3 cut(s)	270, 401, 966
MslI	CAYNNNNRTG	1 cut(s)	1026
Msp20I	TGGCCA	2 cut(s)	481, 725
MspCI	CTTAAG	1 cut(s)	965
MspI	CCGG	4 cut(s)	27, 634, 780, 866
MspR9I	CCNGG	4 cut(s)	27, 259, 590, 634
MvaI	CCWGG	2 cut(s)	259, 590
MwoI	GCNNNNNNNGC	5 cut(s)	245, 556, 614, 722, 772
NciI	CCSGG	2 cut(s)	27, 634
NdeII	GATC	2 cut(s)	148, 880
NheI	GCTAGC	1 cut(s)	262
NlaIV	GGNNCC	1 cut(s)	256
NspI	RCATGY	2 cut(s)	532, 614
PceI	AGGCCT	1 cut(s)	790
PciI	ACATGT	1 cut(s)	610
PfeI	GAWTC	2 cut(s)	352, 640
PflFI	GACNNNGTC	1 cut(s)	61
PflMI	CCANNNNNTGG	1 cut(s)	707
PfoI	TCCNGGA	2 cut(s)	25, 588
PkrI	GCNGC	4 cut(s)	549, 774, 843, 921
PleI	GAGTC	1 cut(s)	649
PpsI	GAGTC	1 cut(s)	649
PscI	ACATGT	1 cut(s)	610
PshAI	GACNNNNGTC	1 cut(s)	291
PshBI	ATTAAT	1 cut(s)	401
Psp6I	CCWGG	2 cut(s)	257, 588
PspFI	CCCAGC	1 cut(s)	834
PspGI	CCWGG	2 cut(s)	257, 588
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	2 cut(s)	255, 461
PstI	CTGCAG	1 cut(s)	924
PsuI	RGATCY	1 cut(s)	148
PsyI	GACNNNGTC	1 cut(s)	61
RsaI	GTAC	1 cut(s)	746
RsaNI	GTAC	1 cut(s)	745
RseI	CAYNNNNRTG	1 cut(s)	1026
SaqAI	TTAA	3 cut(s)	270, 401, 966
SatI	GCNGC	4 cut(s)	548, 773, 842, 920
Sau3AI	GATC	2 cut(s)	148, 880
Sau96I	GGNCC	2 cut(s)	255, 461
SchI	GAGTC	1 cut(s)	649
ScrFI	CCNGG	4 cut(s)	27, 259, 590, 634
SfaNI	GCATC	2 cut(s)	568, 906
SfcI	CTRYAG	1 cut(s)	920
SinI	GGWCC	2 cut(s)	255, 461
SmiMI	CAYNNNNRTG	1 cut(s)	1026
SmlI	CTYRAG	2 cut(s)	767, 965
SmoI	CTYRAG	2 cut(s)	767, 965
Sse9I	AATT	5 cut(s)	184, 308, 470, 483, 599
SseBI	AGGCCT	1 cut(s)	790
SsiI	CCGC	1 cut(s)	548
SspMI	CTAG	3 cut(s)	66, 263, 1042
StuI	AGGCCT	1 cut(s)	790
StyD4I	CCNGG	4 cut(s)	25, 257, 588, 632
StyI	CCWWGG	1 cut(s)	809
TaaI	ACNGT	4 cut(s)	79, 120, 333, 749
TaqI	TCGA	3 cut(s)	54, 487, 879
TasI	AATT	5 cut(s)	184, 308, 470, 483, 599
TatI	WGTACW	1 cut(s)	744
TauI	GCSGC	1 cut(s)	550
TfiI	GAWTC	2 cut(s)	352, 640
Tru1I	TTAA	3 cut(s)	270, 401, 966
Tru9I	TTAA	3 cut(s)	270, 401, 966
TscAI	CASTG	2 cut(s)	336, 343
TseI	GCWGC	3 cut(s)	772, 841, 919
TspDTI	ATGAA	2 cut(s)	153, 1044
TspRI	CASTG	2 cut(s)	336, 343
Tth111I	GACNNNGTC	1 cut(s)	61
Van91I	CCANNNNNTGG	1 cut(s)	707
Vha464I	CTTAAG	1 cut(s)	965
VpaK11BI	GGWCC	2 cut(s)	255, 461
VspI	ATTAAT	1 cut(s)	401
XapI	RAATTY	2 cut(s)	308, 599
XceI	RCATGY	2 cut(s)	532, 614
XspI	CTAG	3 cut(s)	66, 263, 1042

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.