Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001554

Physical Location & Seq

Genomic Coordinates Forward (+)

52387989 .. 52388962

Gene Structure 974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0409600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGATGAACCAACATCAGGTCTTGATGCAAGGGCAGCTGCCATTGTTATGAGGACTGTTAGAAACACCGTTGACACCGGAAGAACAGTTGTTTGCACAATTCATCAGCCCGACATTGATATTTTAGAGGCCTTTGATGAGCTTCTGTTGCTGAAGAGAGGACAAGCAGTTCCTGGAGTGCCAAACATTAAAGAGAAGTATAATCCGGCCACATGGATGCTTGAAGTGAGCTCAGTAGGAACTGAAGTCAAACTTGGAATAGACTTTGCTCAACACTACAAATCATCTTCCTTGCACCAGCTGTATTTTACCTTGATTGCTGCTCTCATTCTTGGGACTTTGTTCTGGAAGGTTGGCAATAAAAGGGAAAACACTGCTCATCTAAACATTATGATTGGGGCTATGTATAATGCTGTGATGTTTGTCAGATGTAACAACTGCGCAAACAGTGCAGCCAATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001653 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006885 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032502 GO:0032989 GO:0036211 GO:0038023 GO:0040007 GO:0042592 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045851 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051716 GO:0055067 GO:0055080 GO:0060089 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0098771 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

154

Amino Acids

16.98

Weight (kDa)

6.89

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17250 AT1G72300
fragaria_vesca	FvH4_6g35570 FvH4_6g35570 FvH4_6g35570 FvH4_6g36780 FvH4_6g36780 FvH4_6g36790 FvH4_6g36810
malus_domestica	MD02G1111300.v1.1 MD09G1166700.v1.1 MD09G1166900.v1.1 MD09G1171000.v1.1 MD17G1155900.v1.1 MD17G1156200.v1.1
prunus_persica	Prupe.3G024400_v2.0.a1 Prupe.3G024600_v2.0.a1 Prupe.3G024700_v2.0.a1 Prupe.3G029500_v2.0.a1
pyrus_communis	pycom09g08450 pycom17g14870 pycom17g14920
rosa_chinensis	RchiOBHm_Chr2g0147291 RchiOBHm_Chr2g0149181 RchiOBHm_Chr2g0149201
rosa_laevigata	RLG00000020249 RLG00000020378 RLG00000020379 RLG00000020380 RLG00000020381 RLG00000020382
rosa_multiflora	Rmu_co8376871.1_g000001 Rmu_sc0001615.1_g000001 Rmu_sc0001615.1_g000002 Rmu_sc0001880.1_g000001 Rmu_sc0008040.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098330 Rroxscaffold_2G00098340 Rroxscaffold_2G00099610
rosa_rugosa	Rorug02G0399000 Rorug02G0409500 Rorug02G0409600 Rorug02G0409700
rosa_samantha	Rh2AG456100 Rh2BG468800 Rh2CG443700 Rh2DG478100
rosa_wichuraiana	Rw2G037320 Rw2G038220 Rw2G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	442
AcoI	YGGCCR	1 cut(s)	207
AcuI	CTGAAG	2 cut(s)	173, 264
AfiI	CCNNNNNNNGG	1 cut(s)	17
AgsI	TTSAA	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	172
AjuI	GAANNNNNNNTTGG	2 cut(s)	237, 269
AloI	GAACNNNNNNTCC	2 cut(s)	153, 185
AluBI	AGCT	4 cut(s)	38, 142, 231, 301
AluI	AGCT	4 cut(s)	38, 142, 231, 301
Alw21I	GWGCWC	1 cut(s)	233
AlwNI	CAGNNNCTG	1 cut(s)	173
AoxI	GGCC	2 cut(s)	129, 207
ApeKI	GCWGC	4 cut(s)	35, 38, 320, 452
AspLEI	GCGC	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	233
BbvI	GCAGC	3 cut(s)	25, 47, 307
BciT130I	CCWGG	1 cut(s)	174
BisI	GCNGC	4 cut(s)	36, 39, 321, 453
BlsI	GCNGC	4 cut(s)	37, 40, 322, 454
Bme1390I	CCNGG	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	2 cut(s)	16, 207
BpmI	CTGGAG	1 cut(s)	195
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	174
BseGI	GGATG	2 cut(s)	10, 222
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMII	CTCAG	1 cut(s)	246
BseXI	GCAGC	3 cut(s)	25, 47, 307
BshFI	GGCC	2 cut(s)	131, 209
BsiHKAI	GWGCWC	1 cut(s)	233
BsiSI	CCGG	2 cut(s)	78, 206
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmFI	GGGAC	1 cut(s)	349
BsnI	GGCC	2 cut(s)	131, 209
Bsp1286I	GDGCHC	1 cut(s)	233
BspANI	GGCC	2 cut(s)	131, 209
BspCNI	CTCAG	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	4 cut(s)	58, 70, 88, 449
Bst6I	CTCTTC	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstDEI	CTNAG	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	10, 222
BstHHI	GCGC	1 cut(s)	443
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 148, 449
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	172
BstV1I	GCAGC	3 cut(s)	25, 47, 307
BsuRI	GGCC	2 cut(s)	131, 209
BtsCI	GGATG	2 cut(s)	10, 222
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	372, 454
CaiI	CAGNNNCTG	1 cut(s)	173
CfoI	GCGC	1 cut(s)	443
CviAII	CATG	1 cut(s)	213
CviJI	RGCY	9 cut(s)	38, 109, 131, 142, 209, 231, 301, 401, 455
CviKI_1	RGCY	9 cut(s)	38, 109, 131, 142, 209, 231, 301, 401, 455
DdeI	CTNAG	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Ecl136II	GAGCTC	1 cut(s)	231
Eco147I	AGGCCT	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	233
Eco53kI	GAGCTC	1 cut(s)	231
Eco57I	CTGAAG	2 cut(s)	173, 264
EcoICRI	GAGCTC	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	233
FaeI	CATG	1 cut(s)	216
FaiI	YATR	8 cut(s)	50, 201, 214, 392, 404, 408, 461, 463
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	1 cut(s)	212
Fnu4HI	GCNGC	4 cut(s)	36, 39, 321, 453
FokI	GGATG	2 cut(s)	17, 229
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	4 cut(s)	36, 39, 321, 453
FspI	TGCGCA	1 cut(s)	442
GlaI	GCGC	1 cut(s)	442
GluI	GCNGC	4 cut(s)	36, 39, 321, 453
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	131, 209
HapII	CCGG	2 cut(s)	78, 206
HhaI	GCGC	1 cut(s)	443
Hin1II	CATG	1 cut(s)	216
Hin6I	GCGC	1 cut(s)	441
HinP1I	GCGC	1 cut(s)	441
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HpaII	CCGG	2 cut(s)	78, 206
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	428
Hpy188III	TCNNGA	2 cut(s)	23, 346
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	4 cut(s)	58, 70, 88, 449
HpyCH4V	TGCA	4 cut(s)	29, 96, 295, 452
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 148, 449
HpyF3I	CTNAG	1 cut(s)	232
Hsp92II	CATG	1 cut(s)	216
HspAI	GCGC	1 cut(s)	441
LpnPI	CCDG	7 cut(s)	3, 91, 159, 186, 219, 311, 331
Lsp1109I	GCAGC	3 cut(s)	25, 47, 307
LweI	GCATC	2 cut(s)	16, 207
MaeIII	GTNAC	1 cut(s)	431
MboII	GAAGA	3 cut(s)	93, 166, 279
MhlI	GDGCHC	1 cut(s)	233
MluCI	AATT	1 cut(s)	99
MnlI	CCTC	3 cut(s)	45, 121, 152
MseI	TTAA	1 cut(s)	189
MslI	CAYNNNNRTG	2 cut(s)	47, 215
MspA1I	CMGCKG	2 cut(s)	38, 301
MspI	CCGG	2 cut(s)	78, 206
MspR9I	CCNGG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	3 cut(s)	35, 148, 449
NlaIII	CATG	1 cut(s)	216
NsbI	TGCGCA	1 cut(s)	442
PceI	AGGCCT	1 cut(s)	131
PfoI	TCCNGGA	1 cut(s)	172
PkrI	GCNGC	4 cut(s)	37, 40, 322, 454
Psp124BI	GAGCTC	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	173
PvuII	CAGCTG	2 cut(s)	38, 301
RseI	CAYNNNNRTG	2 cut(s)	47, 215
SacI	GAGCTC	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	4 cut(s)	36, 39, 321, 453
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	233
SetI	ASST	7 cut(s)	22, 40, 144, 233, 303, 314, 354
SfaNI	GCATC	2 cut(s)	16, 207
SmiMI	CAYNNNNRTG	2 cut(s)	47, 215
Sse9I	AATT	1 cut(s)	99
SseBI	AGGCCT	1 cut(s)	131
SstI	GAGCTC	1 cut(s)	233
StuI	AGGCCT	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	172
TaaI	ACNGT	4 cut(s)	58, 70, 88, 449
TasI	AATT	1 cut(s)	99
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	2 cut(s)	379, 454
TseI	GCWGC	4 cut(s)	35, 38, 320, 452
TspDTI	ATGAA	2 cut(s)	21, 92
TspRI	CASTG	2 cut(s)	379, 454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.