Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001554

Physical Location & Seq

Genomic Coordinates Forward (+)

61515643 .. 61519329

Gene Structure 3687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G037320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3246 bp

ATGAAACACGACAAGGAGCCAGAGGTCCCAACATATCCAAGAGTGGAACTGATCTTTTCTACTAAATGGGTTTTCGTTCTGCTGCTTCTACTTGTTCTTCTTCCTTGCTCTGTCTCTGCTGTCTGTAACAAAGTGGATCAAGATGCTCTTTTGTGTTTGGAGTCATCTTTCAAGGTTTCCTCCCCGCTGAATTGGTCTGTTTCTTCTGATTGTTGCCTCTGGGAAGGAATACTCTGCGGCCCCGATGATGATCGAGTTGTCAGTCTAACCCTGCCAGGGAGAGGATTAAGTGGTCCGATCAGTTCAGCTATCACTAGCCTCACATTTCTCACCCACCTTAATCTCTCCCACAATTATCTTTCGGGTCTTCTACCCGATGGTTTGTTTCAATCCCTGTTTCGCCTTCAAGTTCTGGACTTGAGCTTCAATCGGCTCAATGGCAATCTACCACTTTTATCAAACGAAACCAGCAAGCTTCAGATTGTAGACTTGTCAAGCAATTACTTCAATGGAACAATCCCATCCGTCGCTGCAGGCTCTCTCGCCACTTTCAATGTCAGCAATAACAGCTTTGCTGGCTCCATTCCCATCTCTGAGTTCTGCAAAAATGGTAGCAATCACAGCAACCTCACCATCCTGGACTTCTCCTTCAACAAATTCAGTGACCCAATTTCCACGGGACTCGGTTCTTGTTCGAAGCTCCAAGTCTTCCGGGCAGGCTTCAATAATCTGTCTGGTCCTCTCCCTGATGACATTTTCGACCTTGCTGATCTCCAACAGCTTTCTCTGCCTGTCAATCGCTTGGCAGGACACATTGGTGATGGCATTGTGCGTTTAACCAATCTGAAGGTGCTGGAGCTCTACTCGAACCAATTGGCGGGGCCAATACCAAGCCAAATTGGTAACCTTTTCAGGTTGGAACAGCTAGCTCTCCACATCAACAACCTCACAGGTGCCTTGCCTGCATCTCTCAACAACTGCACAAATCTATCCACCTTGAATTTGCGGGTCAATTATATGTCTGGACAACTCTCTGCCTTCAACTTCTCTACACTCCAACGCCTCACCACACTCGACCTTGGCAACAACAACTTCACTGGTGAGTTACCACAAAGCCTCTACTCTTGCAAGTCACTAACAGCAGTTAGATTCGCTAATAACCGGCTCATAGGCCAGATATCACCTGAAATAGGTGGACTAGAGTCCCTGGCTTTCCTATCCATCTCTAACAACAACTTAAGCAATGCCGCTGGGGCTTTTGAAAATTTAAGGAGTTGTAAGAATCTGACCACTCTGGTGCTATCCAAGAGTTTTATGAATGAACCCTTGCCGGATGATGAAAGCCTAGTAGACTCTGGTGGATTTCAGAATATACAGGTTTTTGCCCTGGGTGGCTGCAATTTCACAGGTCAAGTTCCTACCTGGCTTGGCAAGCTTAAGAAACTTGAAGTCTTGGACTTGTCAGTTAACCTCTTAACAGGTCCAATTCCCAGTTGGTTTGCTACTCTGCCTAGCCTTTTCTACATGGATTTGTCCAATAATAACCTTACTGGAGGATTTCCTAAGGAGCTCTGTGGGATGCCAGGTTTGACAACAAAAGAGGCCAGCAGTCTAGCAAAGAGCAGTAATCTAGAGTTGCCAGTATTTGTGATGCCTGAAAATGCAACTAATCAGCAGTACAATCAGCTGTCCAGCCTCCCTCCAGCTATATATCTTGGTAATAACAGCCTTAGCGGCAATATCCCCATTGAGATAGGGCAATTGCAGTTCATTCTTGTGTTGGACCTTAGTGATAACGGCTTCTCTGGCAGCATCCCGGTTCAGATATGTAATCTCATCAACTTGGAGAAATTGGATCTCTCCCACAACAGATTATCTGGTGAAATACCTGCTGCTCTCAAAGATTTGCATTTCATGTCTTCCTTCAATGTGGCATACAATGATCTTCAGGGACCTGTGCCATCTGGAGGTCAGTTTAATACTTTTACCAACTCGAGCTTTGAAGGGAATCCAGGATTATGTGGCCCTCAGACTGCACAGCACTCTTGCTCTCAATCAACAGCATCTCCACCAGTTCATAGTAGGAGGTCAAACAAAATCCTTCTGATTGGGCTTGCATCTTCTATTTGTTTTGGCATTGTTTTTATCATTGCAATGCTAGCTGTGTGGGTGTTGTCTAAGAGAAGAATTATTCCAGGAGGTGATTCTGACAAGATGGAATTGGATACAATCTCTAGCTATTCCACTGCTGCTGTTACTCCTGAGCTTGAGAAGGATACCAGCCTGGTCATCGTGTTCCCTACCAACACCAATGAAATCAAGGATCTTAATATATATGAAATCCTGAAAGCAACCAACAACTTCAATCAAGCAAACATCATTGGCTGTGGAGGTTTTGGTCTGGTATACAAGGCAACATTAGCAAATGGAACCAATCTGGCTGTTAAGAAACTCTCAGGAGACTTGGGTTTGATGGAAAGGGAGTTCAAGGCGGAGGTTGAGGCACTTTCCACTGCTCAACATGAGAACCTTGTTTCACTGCAAGGGTATTGCGTGCATGATGGTGTTCGTCTATTAATGTATTCCTACATGGAGAATGGAAGCTTGGATTTCTGGTTACATGAGAAACCTGATGGTGCTTCCCAATTAGATTGGCCAACACGGCTGAAGATTGCACGGGGAGCAGGGGCTGGATTGGCTTACATGCATCAGATATGTGAGCCACACATTGTGCATCGTGATATCAAGTCCAGCAACATCCTGCTGGATGATAAATTCAAAGCACATGTTGCTGATTTTGGGTTGTCCCGGTTGATTCTTCCATATGAGACTCATGTTACAACCGAGCTTGTTGGTACCCTTGGTTACATTCCTCCCGAGTATGGACAAGCATGGGTAGCCACTTTAAGAGGAGATATGTACAGTTTTGGTGTTGTCATGCTTGAGCTGGTCACTGGAAAAAGGCCGTTTGAGGTATGCAAACCAAGGTCATCGAGAGATTTGGTTGGTTGGGTACAGCAAACGAGGAAGGAGGGCAAAGCCGAGGAAGTTTTTGATCCTCTCCTGAGAGGGAAAGGCTTTGAAGAAGAGATATTGCAGGTGCTTGATGTAGCTTGCATGTGTGTCAACCAGAACCCTCTTAAGAGACCAACCATCAAAGAAGTTGTCGATTGGCTGGAAAATGTAGGGGCATCTCACCATGACTTGAATATAGACCAGCAAAAACCTTTTCTTGACACATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001653 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006885 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032502 GO:0032989 GO:0036211 GO:0038023 GO:0040007 GO:0042592 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045851 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051716 GO:0055067 GO:0055080 GO:0060089 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0098771 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

1081

Amino Acids

117.85

Weight (kDa)

5.36

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	246 - 340	1.6e-06	Leucine-rich repeat region
LRR_14	PF23598	351 - 512	4.7e-07	Leucine-rich repeat region
LRR_8	PF13855	457 - 516	2.4e-09	Leucine rich repeat
LRR_8	PF13855	481 - 531	5.4e-08	Leucine rich repeat
Pkinase	PF00069	789 - 1056	5.8e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	791 - 1057	2.1e-38	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17250 AT1G72300
fragaria_vesca	FvH4_6g35570 FvH4_6g35570 FvH4_6g35570 FvH4_6g36780 FvH4_6g36780 FvH4_6g36790 FvH4_6g36810
malus_domestica	MD02G1111300.v1.1 MD09G1166700.v1.1 MD09G1166900.v1.1 MD09G1171000.v1.1 MD17G1155900.v1.1 MD17G1156200.v1.1
prunus_persica	Prupe.3G024400_v2.0.a1 Prupe.3G024600_v2.0.a1 Prupe.3G024700_v2.0.a1 Prupe.3G029500_v2.0.a1
pyrus_communis	pycom09g08450 pycom17g14870 pycom17g14920
rosa_chinensis	RchiOBHm_Chr2g0147291 RchiOBHm_Chr2g0149181 RchiOBHm_Chr2g0149201
rosa_laevigata	RLG00000020249 RLG00000020378 RLG00000020379 RLG00000020380 RLG00000020381 RLG00000020382
rosa_multiflora	Rmu_co8376871.1_g000001 Rmu_sc0001615.1_g000001 Rmu_sc0001615.1_g000002 Rmu_sc0001880.1_g000001 Rmu_sc0008040.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098330 Rroxscaffold_2G00098340 Rroxscaffold_2G00099610
rosa_rugosa	Rorug02G0399000 Rorug02G0409500 Rorug02G0409600 Rorug02G0409700
rosa_samantha	Rh2AG456100 Rh2BG468800 Rh2CG443700 Rh2DG478100
rosa_wichuraiana	Rw2G037320 Rw2G038220 Rw2G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	3088
Acc36I	ACCTGC	2 cut(s)	1897, 3088
Acc65I	GGTACC	1 cut(s)	2855
AccB1I	GGYRCC	2 cut(s)	953, 2855
AccI	GTMKAC	3 cut(s)	486, 1350, 2406
AciI	CCGC	7 cut(s)	185, 237, 878, 1006, 1248, 1734, 2492
AclWI	GGATC	4 cut(s)	144, 1863, 2331, 3050
AcoI	YGGCCR	1 cut(s)	2654
AcsI	RAATTY	4 cut(s)	656, 1000, 1264, 2774
AcuI	CTGAAG	4 cut(s)	461, 866, 1931, 2687
AdeI	CACNNNGTG	1 cut(s)	2731
AfaI	GTAC	4 cut(s)	1679, 2857, 2921, 3015
AfiI	CCNNNNNNNGG	6 cut(s)	276, 281, 877, 1190, 1967, 2882
AflII	CTTAAG	3 cut(s)	1237, 1436, 3140
AflIII	ACRYGT	1 cut(s)	2785
AjnI	CCWGG	9 cut(s)	274, 636, 1206, 1386, 1421, 1582, 2011, 2194, 2283
AjuI	GAANNNNNNNTTGG	2 cut(s)	2588, 2620
AleI	CACNNNNGTG	2 cut(s)	816, 1295
AloI	GAACNNNNNNTCC	2 cut(s)	2468, 2500
Alw21I	GWGCWC	2 cut(s)	861, 1572
Alw26I	GTCTC	4 cut(s)	118, 2454, 2822, 3139
AlwI	GGATC	4 cut(s)	144, 1863, 2331, 3050
AlwNI	CAGNNNCTG	1 cut(s)	2690
Ama87I	CYCGRG	2 cut(s)	1993, 2876
AoxI	GGCC	7 cut(s)	238, 881, 1171, 1602, 2023, 2654, 2963
ApeKI	GCWGC	6 cut(s)	82, 530, 1395, 1809, 1892, 2249
ApoI	RAATTY	4 cut(s)	656, 1000, 1264, 2774
ArsI	GACNNNNNNTTYG	2 cut(s)	3150, 3182
AseI	ATTAAT	1 cut(s)	2576
Asp718I	GGTACC	1 cut(s)	2855
AspS9I	GGNCC	9 cut(s)	25, 239, 293, 737, 881, 1481, 1783, 1952, 2024
AsuC2I	CCSGG	3 cut(s)	713, 1817, 2809
AsuHPI	GGTGA	9 cut(s)	322, 622, 830, 1057, 1112, 1173, 1892, 2213, 3188
AsuII	TTCGAA	1 cut(s)	695
AsuNHI	GCTAGC	2 cut(s)	925, 2158
AvaI	CYCGRG	2 cut(s)	1993, 2876
AvaII	GGWCC	6 cut(s)	25, 293, 737, 1481, 1783, 1952
AxyI	CCTNAGG	1 cut(s)	1563
BalI	TGGCCA	1 cut(s)	2656
BanI	GGYRCC	2 cut(s)	953, 2855
BanII	GRGCYC	2 cut(s)	861, 1572
BbsI	GAAGAC	3 cut(s)	359, 700, 1911
Bbv12I	GWGCWC	2 cut(s)	861, 1572
BbvI	GCAGC	6 cut(s)	69, 517, 1382, 1821, 1879, 2236
BceAI	ACGGC	3 cut(s)	1813, 2678, 2950
BciT130I	CCWGG	9 cut(s)	276, 638, 1208, 1388, 1423, 1584, 2013, 2196, 2285
BciVI	GTATCC	2 cut(s)	2218, 2269
BcnI	CCSGG	3 cut(s)	713, 1817, 2809
BcoDI	GTCTC	4 cut(s)	118, 2454, 2822, 3139
BfaI	CTAG	9 cut(s)	315, 926, 1199, 1346, 1512, 1613, 1631, 2159, 2235
BfmI	CTRYAG	1 cut(s)	531
BfrI	CTTAAG	3 cut(s)	1237, 1436, 3140
BfuAI	ACCTGC	2 cut(s)	1897, 3088
BfuI	GTATCC	2 cut(s)	2218, 2269
BglI	GCCNNNNNGGC	3 cut(s)	1253, 1734, 2662
BisI	GCNGC	9 cut(s)	83, 238, 531, 1248, 1396, 1735, 1810, 1893, 2250
BlsI	GCNGC	9 cut(s)	84, 239, 532, 1249, 1397, 1736, 1811, 1894, 2251
Bme18I	GGWCC	6 cut(s)	25, 293, 737, 1481, 1783, 1952
BmeT110I	CYCGRG	2 cut(s)	1993, 2876
BmgT120I	GGNCC	9 cut(s)	25, 239, 293, 737, 881, 1481, 1783, 1952, 2024
BmiI	GGNNCC	9 cut(s)	18, 27, 241, 580, 882, 955, 1953, 2431, 2857
BmrI	ACTGGG	1 cut(s)	1485
BmtI	GCTAGC	2 cut(s)	929, 2162
BmuI	ACTGGG	1 cut(s)	1485
BoxI	GACNNNNGTC	1 cut(s)	1201
BpiI	GAAGAC	3 cut(s)	359, 700, 1911
BplI	GAGNNNNNCTC	2 cut(s)	848, 880
BpmI	CTGGAG	4 cut(s)	875, 1572, 1686, 1986
Bpu10I	CCTNAGC	2 cut(s)	1730, 2262
Bpu14I	TTCGAA	1 cut(s)	695
BpuEI	CTTGAG	3 cut(s)	439, 2288, 2963
BpuMI	CCSGG	3 cut(s)	713, 1817, 2809
BsaBI	GATNNNNATC	1 cut(s)	249
BsaI	GGTCTC	1 cut(s)	3139
BsaJI	CCNNGG	9 cut(s)	275, 675, 1078, 1206, 1386, 1387, 2860, 2984, 3042
BsaXI	ACNNNNNCTCC	2 cut(s)	2050, 2080
Bsc4I	CCNNNNNNNGG	6 cut(s)	276, 281, 877, 1190, 1967, 2882
Bse118I	RCCGGY	1 cut(s)	1161
Bse1I	ACTGG	6 cut(s)	1102, 1491, 1555, 1640, 2072, 2959
Bse21I	CCTNAGG	1 cut(s)	1563
Bse3DI	GCAATG	3 cut(s)	1249, 2148, 2160
Bse8I	GATNNNNATC	1 cut(s)	249
BseBI	CCWGG	9 cut(s)	276, 638, 1208, 1388, 1423, 1584, 2013, 2196, 2285
BseDI	CCNNGG	9 cut(s)	275, 675, 1078, 1206, 1386, 1387, 2860, 2984, 3042
BseGI	GGATG	8 cut(s)	521, 633, 1339, 1584, 1812, 2757, 2773, 3239
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	6 cut(s)	276, 281, 877, 1190, 1967, 2882
BseMI	GCAATG	3 cut(s)	1249, 2148, 2160
BseMII	CTCAG	5 cut(s)	585, 2042, 2253, 2469, 3056
BseNI	ACTGG	6 cut(s)	1102, 1491, 1555, 1640, 2072, 2959
BseRI	GAGGAG	1 cut(s)	2925
BseXI	GCAGC	6 cut(s)	69, 517, 1382, 1821, 1879, 2236
BseYI	CCCAGC	1 cut(s)	1250
BsgI	GTGCAG	2 cut(s)	964, 2019
BshFI	GGCC	7 cut(s)	240, 883, 1173, 1604, 2025, 2656, 2965
BshNI	GGYRCC	2 cut(s)	953, 2855
BsiHKAI	GWGCWC	2 cut(s)	861, 1572
BsiHKCI	CYCGRG	2 cut(s)	1993, 2876
BsiSI	CCGG	5 cut(s)	712, 1162, 1331, 1817, 2809
BslFI	GGGAC	5 cut(s)	11, 693, 1189, 1965, 2791
BslI	CCNNNNNNNGG	6 cut(s)	276, 281, 877, 1190, 1967, 2882
BsmAI	GTCTC	4 cut(s)	118, 2454, 2822, 3139
BsmFI	GGGAC	5 cut(s)	11, 693, 1189, 1965, 2791
BsnI	GGCC	7 cut(s)	240, 883, 1173, 1604, 2025, 2656, 2965
Bso31I	GGTCTC	1 cut(s)	3139
BsoBI	CYCGRG	2 cut(s)	1993, 2876
Bsp119I	TTCGAA	1 cut(s)	695
Bsp1286I	GDGCHC	2 cut(s)	861, 1572
Bsp1407I	TGTACA	1 cut(s)	2919
Bsp143I	GATC	9 cut(s)	51, 136, 250, 297, 769, 1855, 1942, 2323, 3055
BspACI	CCGC	7 cut(s)	185, 237, 878, 1006, 1248, 1734, 2492
BspANI	GGCC	7 cut(s)	240, 883, 1173, 1604, 2025, 2656, 2965
BspCNI	CTCAG	5 cut(s)	586, 2041, 2254, 2468, 3057
BspLI	GGNNCC	9 cut(s)	18, 27, 241, 580, 882, 955, 1953, 2431, 2857
BspMAI	CTGCAG	1 cut(s)	535
BspMI	ACCTGC	2 cut(s)	1897, 3088
BspOI	GCTAGC	2 cut(s)	929, 2162
BspPI	GGATC	4 cut(s)	144, 1863, 2331, 3050
BspT104I	TTCGAA	1 cut(s)	695
BspT107I	GGYRCC	2 cut(s)	953, 2855
BspTI	CTTAAG	3 cut(s)	1237, 1436, 3140
BspTNI	GGTCTC	1 cut(s)	3139
BsrDI	GCAATG	3 cut(s)	1249, 2148, 2160
BsrFI	RCCGGY	1 cut(s)	1161
BsrGI	TGTACA	1 cut(s)	2919
BsrI	ACTGG	6 cut(s)	1102, 1491, 1555, 1640, 2072, 2959
BssAI	RCCGGY	1 cut(s)	1161
BssECI	CCNNGG	9 cut(s)	275, 675, 1078, 1206, 1386, 1387, 2860, 2984, 3042
BssMI	GATC	9 cut(s)	51, 136, 250, 297, 769, 1855, 1942, 2323, 3055
BssNAI	GTATAC	1 cut(s)	2407
BssT1I	CCWWGG	3 cut(s)	1078, 2860, 2984
Bst1107I	GTATAC	1 cut(s)	2407
Bst2UI	CCWGG	9 cut(s)	276, 638, 1208, 1388, 1423, 1584, 2013, 2196, 2285
Bst4CI	ACNGT	1 cut(s)	2924
Bst6I	CTCTTC	1 cut(s)	3081
BstAFI	CTTAAG	3 cut(s)	1237, 1436, 3140
BstAPI	GCANNNNNTGC	1 cut(s)	2789
BstAUI	TGTACA	1 cut(s)	2919
BstBI	TTCGAA	1 cut(s)	695
BstDEI	CTNAG	9 cut(s)	594, 1563, 1730, 1787, 2028, 2178, 2262, 2455, 3065
BstDSI	CCRYGG	1 cut(s)	675
BstEII	GGTNACC	1 cut(s)	902
BstENI	CCTNNNNNAGG	1 cut(s)	1188
BstF5I	GGATG	8 cut(s)	521, 633, 1339, 1584, 1812, 2757, 2773, 3239
BstKTI	GATC	9 cut(s)	54, 139, 253, 300, 772, 1858, 1945, 2326, 3058
BstMAI	GTCTC	4 cut(s)	118, 2454, 2822, 3139
BstMBI	GATC	9 cut(s)	51, 136, 250, 297, 769, 1855, 1942, 2323, 3055
BstNI	CCWGG	9 cut(s)	276, 638, 1208, 1388, 1423, 1584, 2013, 2196, 2285
BstNSI	RCATGY	3 cut(s)	2707, 2789, 3121
BstPAI	GACNNNNGTC	1 cut(s)	1201
BstPI	GGTNACC	1 cut(s)	902
BstSFI	CTRYAG	1 cut(s)	531
BstV1I	GCAGC	6 cut(s)	69, 517, 1382, 1821, 1879, 2236
BstV2I	GAAGAC	3 cut(s)	359, 700, 1911
BstX2I	RGATCY	2 cut(s)	1855, 2323
BstYI	RGATCY	2 cut(s)	1855, 2323
BstZ17I	GTATAC	1 cut(s)	2407
Bsu36I	CCTNAGG	1 cut(s)	1563
BsuI	GTATCC	2 cut(s)	2218, 2269
BsuRI	GGCC	7 cut(s)	240, 883, 1173, 1604, 2025, 2656, 2965
BtgI	CCRYGG	1 cut(s)	675
BtsCI	GGATG	8 cut(s)	521, 633, 1339, 1584, 1812, 2757, 2773, 3239
BtsI	GCAGTG	3 cut(s)	2244, 2511, 2537
BtsIMutI	CAGTG	6 cut(s)	667, 1095, 2244, 2511, 2537, 2952
BveI	ACCTGC	2 cut(s)	1897, 3088
CaiI	CAGNNNCTG	1 cut(s)	2690
Cfr10I	RCCGGY	1 cut(s)	1161
Cfr13I	GGNCC	9 cut(s)	25, 239, 293, 737, 881, 1481, 1783, 1952, 2024
Csp6I	GTAC	4 cut(s)	1678, 2856, 2920, 3014
CviQI	GTAC	4 cut(s)	1678, 2856, 2920, 3014
DdeI	CTNAG	9 cut(s)	594, 1563, 1730, 1787, 2028, 2178, 2262, 2455, 3065
DpnI	GATC	9 cut(s)	53, 138, 252, 299, 771, 1857, 1944, 2325, 3057
DpnII	GATC	9 cut(s)	51, 136, 250, 297, 769, 1855, 1942, 2323, 3055
DraIII	CACNNNGTG	1 cut(s)	2731
EaeI	YGGCCR	1 cut(s)	2654
Eam1104I	CTCTTC	1 cut(s)	3081
EarI	CTCTTC	1 cut(s)	3081
EciI	GGCGGA	1 cut(s)	2507
Ecl136II	GAGCTC	2 cut(s)	859, 1570
Eco130I	CCWWGG	3 cut(s)	1078, 2860, 2984
Eco24I	GRGCYC	2 cut(s)	861, 1572
Eco31I	GGTCTC	1 cut(s)	3139
Eco32I	GATATC	2 cut(s)	1179, 2743
Eco47I	GGWCC	6 cut(s)	25, 293, 737, 1481, 1783, 1952
Eco53kI	GAGCTC	2 cut(s)	859, 1570
Eco57I	CTGAAG	4 cut(s)	461, 866, 1931, 2687
Eco81I	CCTNAGG	1 cut(s)	1563
Eco88I	CYCGRG	2 cut(s)	1993, 2876
Eco91I	GGTNACC	1 cut(s)	902
EcoICRI	GAGCTC	2 cut(s)	859, 1570
EcoNI	CCTNNNNNAGG	1 cut(s)	1188
EcoO109I	RGGNCCY	2 cut(s)	25, 1952
EcoO65I	GGTNACC	1 cut(s)	902
EcoRII	CCWGG	9 cut(s)	274, 636, 1206, 1386, 1421, 1582, 2011, 2194, 2283
EcoRV	GATATC	2 cut(s)	1179, 2743
EcoT14I	CCWWGG	3 cut(s)	1078, 2860, 2984
EcoT22I	ATGCAT	1 cut(s)	2709
EcoT38I	GRGCYC	2 cut(s)	861, 1572
ErhI	CCWWGG	3 cut(s)	1078, 2860, 2984
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FaqI	GGGAC	5 cut(s)	11, 693, 1189, 1965, 2791
FauI	CCCGC	3 cut(s)	192, 871, 999
FauNDI	CATATG	1 cut(s)	2824
FblI	GTMKAC	3 cut(s)	486, 1350, 2406
Fnu4HI	GCNGC	9 cut(s)	83, 238, 531, 1248, 1396, 1735, 1810, 1893, 2250
FokI	GGATG	8 cut(s)	508, 620, 1346, 1591, 1799, 2744, 2780, 3226
FriOI	GRGCYC	2 cut(s)	861, 1572
Fsp4HI	GCNGC	9 cut(s)	83, 238, 531, 1248, 1396, 1735, 1810, 1893, 2250
FspBI	CTAG	9 cut(s)	315, 926, 1199, 1346, 1512, 1613, 1631, 2159, 2235
GluI	GCNGC	9 cut(s)	83, 238, 531, 1248, 1396, 1735, 1810, 1893, 2250
GsaI	CCCAGC	1 cut(s)	1254
GsuI	CTGGAG	4 cut(s)	875, 1572, 1686, 1986
HaeIII	GGCC	7 cut(s)	240, 883, 1173, 1604, 2025, 2656, 2965
HapII	CCGG	5 cut(s)	712, 1162, 1331, 1817, 2809
HincII	GTYRAC	2 cut(s)	1468, 3127
HindII	GTYRAC	2 cut(s)	1468, 3127
HindIII	AAGCTT	3 cut(s)	473, 1433, 2602
HpaI	GTTAAC	1 cut(s)	1468
HpaII	CCGG	5 cut(s)	712, 1162, 1331, 1817, 2809
HphI	GGTGA	9 cut(s)	322, 622, 830, 1057, 1112, 1173, 1892, 2213, 3188
Hpy166II	GTNNAC	6 cut(s)	487, 1196, 1351, 1468, 2407, 3127
Hpy8I	GTNNAC	6 cut(s)	487, 1196, 1351, 1468, 2407, 3127
Hpy99I	CGWCG	1 cut(s)	530
HpyCH4III	ACNGT	1 cut(s)	2924
HpyF3I	CTNAG	9 cut(s)	594, 1563, 1730, 1787, 2028, 2178, 2262, 2455, 3065
KpnI	GGTACC	1 cut(s)	2859
KspAI	GTTAAC	1 cut(s)	1468
Kzo9I	GATC	9 cut(s)	51, 136, 250, 297, 769, 1855, 1942, 2323, 3055
LmnI	GCTCC	6 cut(s)	16, 584, 705, 856, 1567, 2681
Lsp1109I	GCAGC	6 cut(s)	69, 517, 1382, 1821, 1879, 2236
MaeI	CTAG	9 cut(s)	315, 926, 1199, 1346, 1512, 1613, 1631, 2159, 2235
MalI	GATC	9 cut(s)	53, 138, 252, 299, 771, 1857, 1944, 2325, 3057
MboI	GATC	9 cut(s)	51, 136, 250, 297, 769, 1855, 1942, 2323, 3055
MfeI	CAATTG	2 cut(s)	872, 1760
MflI	RGATCY	2 cut(s)	1855, 2323
MhlI	GDGCHC	2 cut(s)	861, 1572
MlsI	TGGCCA	1 cut(s)	2656
MluNI	TGGCCA	1 cut(s)	2656
MlyI	GAGTC	5 cut(s)	170, 675, 1211, 1346, 2824
MmeI	TCCRAC	4 cut(s)	799, 897, 1081, 1761
Mox20I	TGGCCA	1 cut(s)	2656
Mph1103I	ATGCAT	1 cut(s)	2709
MscI	TGGCCA	1 cut(s)	2656
MslI	CAYNNNNRTG	5 cut(s)	816, 1295, 1775, 2153, 2562
Msp20I	TGGCCA	1 cut(s)	2656
MspA1I	CMGCKG	3 cut(s)	187, 1250, 1687
MspCI	CTTAAG	3 cut(s)	1237, 1436, 3140
MspI	CCGG	5 cut(s)	712, 1162, 1331, 1817, 2809
MunI	CAATTG	2 cut(s)	872, 1760
MvaI	CCWGG	9 cut(s)	276, 638, 1208, 1388, 1423, 1584, 2013, 2196, 2285
NciI	CCSGG	3 cut(s)	713, 1817, 2809
NdeI	CATATG	1 cut(s)	2824
NdeII	GATC	9 cut(s)	51, 136, 250, 297, 769, 1855, 1942, 2323, 3055
NheI	GCTAGC	2 cut(s)	925, 2158
NlaIV	GGNNCC	9 cut(s)	18, 27, 241, 580, 882, 955, 1953, 2431, 2857
NmeAIII	GCCGAG	1 cut(s)	3067
NmuCI	GTSAC	3 cut(s)	662, 1131, 2950
NsiI	ATGCAT	1 cut(s)	2709
NspI	RCATGY	3 cut(s)	2707, 2789, 3121
NspV	TTCGAA	1 cut(s)	695
OliI	CACNNNNGTG	2 cut(s)	816, 1295
PaeR7I	CTCGAG	1 cut(s)	1993
PaqCI	CACCTGC	1 cut(s)	3088
PasI	CCCWGGG	1 cut(s)	1387
PciI	ACATGT	1 cut(s)	2785
PfeI	GAWTC	5 cut(s)	1149, 1282, 2008, 2204, 2815
PfoI	TCCNGGA	3 cut(s)	636, 2011, 2194
PkrI	GCNGC	9 cut(s)	84, 239, 532, 1249, 1397, 1736, 1811, 1894, 2251
PleI	GAGTC	5 cut(s)	169, 675, 1210, 1346, 2824
PpsI	GAGTC	5 cut(s)	169, 675, 1210, 1346, 2824
PpuMI	RGGWCCY	2 cut(s)	25, 1952
PscI	ACATGT	1 cut(s)	2785
PshAI	GACNNNNGTC	1 cut(s)	1201
PshBI	ATTAAT	1 cut(s)	2576
Psp124BI	GAGCTC	2 cut(s)	861, 1572
Psp5II	RGGWCCY	2 cut(s)	25, 1952
Psp6I	CCWGG	9 cut(s)	274, 636, 1206, 1386, 1421, 1582, 2011, 2194, 2283
PspEI	GGTNACC	1 cut(s)	902
PspFI	CCCAGC	1 cut(s)	1250
PspGI	CCWGG	9 cut(s)	274, 636, 1206, 1386, 1421, 1582, 2011, 2194, 2283
PspN4I	GGNNCC	9 cut(s)	18, 27, 241, 580, 882, 955, 1953, 2431, 2857
PspPI	GGNCC	9 cut(s)	25, 239, 293, 737, 881, 1481, 1783, 1952, 2024
PspPPI	RGGWCCY	2 cut(s)	25, 1952
PspXI	VCTCGAGB	1 cut(s)	1993
PstI	CTGCAG	1 cut(s)	535
PstNI	CAGNNNCTG	1 cut(s)	2690
PsuI	RGATCY	2 cut(s)	1855, 2323
PvuII	CAGCTG	1 cut(s)	1687
RsaI	GTAC	4 cut(s)	1679, 2857, 2921, 3015
RsaNI	GTAC	4 cut(s)	1678, 2856, 2920, 3014
RseI	CAYNNNNRTG	5 cut(s)	816, 1295, 1775, 2153, 2562
SacI	GAGCTC	2 cut(s)	861, 1572
SatI	GCNGC	9 cut(s)	83, 238, 531, 1248, 1396, 1735, 1810, 1893, 2250
Sau3AI	GATC	9 cut(s)	51, 136, 250, 297, 769, 1855, 1942, 2323, 3055
Sau96I	GGNCC	9 cut(s)	25, 239, 293, 737, 881, 1481, 1783, 1952, 2024
SchI	GAGTC	5 cut(s)	170, 675, 1211, 1346, 2824
SduI	GDGCHC	2 cut(s)	861, 1572
SfcI	CTRYAG	1 cut(s)	531
Sfr274I	CTCGAG	1 cut(s)	1993
SfuI	TTCGAA	1 cut(s)	695
SinI	GGWCC	6 cut(s)	25, 293, 737, 1481, 1783, 1952
SlaI	CTCGAG	1 cut(s)	1993
SmiMI	CAYNNNNRTG	5 cut(s)	816, 1295, 1775, 2153, 2562
SmlI	CTYRAG	7 cut(s)	418, 1237, 1436, 1993, 2267, 2942, 3140
SmoI	CTYRAG	7 cut(s)	418, 1237, 1436, 1993, 2267, 2942, 3140
SsiI	CCGC	7 cut(s)	185, 237, 878, 1006, 1248, 1734, 2492
SspMI	CTAG	9 cut(s)	315, 926, 1199, 1346, 1512, 1613, 1631, 2159, 2235
SstI	GAGCTC	2 cut(s)	861, 1572
StyI	CCWWGG	3 cut(s)	1078, 2860, 2984
TaaI	ACNGT	1 cut(s)	2924
TaqI	TCGA	8 cut(s)	253, 695, 759, 866, 1074, 1994, 2993, 3168
TatI	WGTACW	2 cut(s)	1677, 2919
TauI	GCSGC	3 cut(s)	240, 1250, 1737
TfiI	GAWTC	5 cut(s)	1149, 1282, 2008, 2204, 2815
TscAI	CASTG	6 cut(s)	667, 1102, 2251, 2518, 2544, 2959
TseFI	GTSAC	3 cut(s)	662, 1131, 2950
TseI	GCWGC	6 cut(s)	82, 530, 1395, 1809, 1892, 2249
Tsp45I	GTSAC	3 cut(s)	662, 1131, 2950
TspDTI	ATGAA	9 cut(s)	17, 1331, 1335, 1353, 1759, 1903, 2066, 2328, 2352
TspGWI	ACGGA	1 cut(s)	514
TspRI	CASTG	6 cut(s)	667, 1102, 2251, 2518, 2544, 2959
Vha464I	CTTAAG	3 cut(s)	1237, 1436, 3140
VpaK11BI	GGWCC	6 cut(s)	25, 293, 737, 1481, 1783, 1952
VspI	ATTAAT	1 cut(s)	2576
XagI	CCTNNNNNAGG	1 cut(s)	1188
XapI	RAATTY	4 cut(s)	656, 1000, 1264, 2774
XbaI	TCTAGA	1 cut(s)	1630
XceI	RCATGY	3 cut(s)	2707, 2789, 3121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1491
XhoI	CTCGAG	1 cut(s)	1993
XmiI	GTMKAC	3 cut(s)	486, 1350, 2406
XspI	CTAG	9 cut(s)	315, 926, 1199, 1346, 1512, 1613, 1631, 2159, 2235
Zsp2I	ATGCAT	1 cut(s)	2709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.