Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001615.1

Orthogroup ID

OG0001554

Physical Location & Seq

Genomic Coordinates Forward (+)

14007 .. 15185

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001615.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atgatcaaaatgaagcccaacaaagtaatctcctccaaggatgagaagaaggacattccaacaacacagctcatcttcttaggtcagtgggtttttgttctgctgtttcttccttgctgtacctcggctgcttgtgatcaagtggttcgcaacgctctcttgtccttggctttcaaggtctcattaccattgaactggtcggctgcctcggactgctgccattgggaaggaatagtctgtggctttgatgatcgagtcgttcatctctggctgcctgggagaggcttaagaggttcaatctctccagctatcaccaacctcacatttctcacccacctcaatctttccaacaataggctgttgggtctgctcccagatagattgttttcctccctctttcgcctccaagttctagacttgagcttcaatcgtctcaacggccacttaccaatttcatctaatgaagccagcaagcttcagattgtagacttgtccagcaattacttcaatggaacaatcccatcttcgatcctcatcccatccgtcgctgcaggctctctcgccactttcaatgtcagcaataacagctttgctggctccattcccatctctgttttctgcaaaaatggtagcaatcacagcaaccttaccatcttggacttctccttcaacaaattcagtgaaccaattttcaccggactcggcacttgttcgaagctccaagtcttccgggcaggcttcaataatctgtctggccctctccctgatgacattttcgaccttgctgatctccaacagctttctctgcctgtcaatcgcttgtcaggacacattggtgatggcattgtgcgtttaaccaatctgaagctgctggagctctactcgaaccaattggcggggccaataccaagccaaattggtaacctttgcaggttggaagagctagctctccacatcaacatcctcacaggtgccttgcctgaatctctcaacaactgcacaaatctatccaccttgaatttgcgggtcaattatatggatggagaactctctgccttcaacttctctacactccaacgcctcaccacactcgaccttggcaacaacaacttcgctggtgagttaccacaaacttcactttgtatgcatgctgaacctgtttgttctttttctctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001653 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006885 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032502 GO:0032989 GO:0036211 GO:0038023 GO:0040007 GO:0042592 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045851 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051716 GO:0055067 GO:0055080 GO:0060089 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0098771 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

392

Amino Acids

42.8

Weight (kDa)

6.44

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17250 AT1G72300
fragaria_vesca	FvH4_6g35570 FvH4_6g35570 FvH4_6g35570 FvH4_6g36780 FvH4_6g36780 FvH4_6g36790 FvH4_6g36810
malus_domestica	MD02G1111300.v1.1 MD09G1166700.v1.1 MD09G1166900.v1.1 MD09G1171000.v1.1 MD17G1155900.v1.1 MD17G1156200.v1.1
prunus_persica	Prupe.3G024400_v2.0.a1 Prupe.3G024600_v2.0.a1 Prupe.3G024700_v2.0.a1 Prupe.3G029500_v2.0.a1
pyrus_communis	pycom09g08450 pycom17g14870 pycom17g14920
rosa_chinensis	RchiOBHm_Chr2g0147291 RchiOBHm_Chr2g0149181 RchiOBHm_Chr2g0149201
rosa_laevigata	RLG00000020249 RLG00000020378 RLG00000020379 RLG00000020380 RLG00000020381 RLG00000020382
rosa_multiflora	Rmu_co8376871.1_g000001 Rmu_sc0001615.1_g000001 Rmu_sc0001615.1_g000002 Rmu_sc0001880.1_g000001 Rmu_sc0008040.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098330 Rroxscaffold_2G00098340 Rroxscaffold_2G00099610
rosa_rugosa	Rorug02G0399000 Rorug02G0409500 Rorug02G0409600 Rorug02G0409700
rosa_samantha	Rh2AG456100 Rh2BG468800 Rh2CG443700 Rh2DG478100
rosa_wichuraiana	Rw2G037320 Rw2G038220 Rw2G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	921
AccB1I	GGYRCC	1 cut(s)	971
AccI	GTMKAC	1 cut(s)	486
AciI	CCGC	2 cut(s)	896, 1024
AclWI	GGATC	1 cut(s)	523
AcoI	YGGCCR	1 cut(s)	439
AcsI	RAATTY	2 cut(s)	674, 1018
AcuI	CTGAAG	2 cut(s)	461, 884
AfaI	GTAC	1 cut(s)	121
AfiI	CCNNNNNNNGG	3 cut(s)	281, 354, 895
AflII	CTTAAG	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	274
AleI	CACNNNNGTG	1 cut(s)	834
Alw21I	GWGCWC	1 cut(s)	879
Alw26I	GTCTC	2 cut(s)	184, 437
AlwI	GGATC	1 cut(s)	523
AoxI	GGCC	3 cut(s)	439, 754, 899
ApeKI	GCWGC	6 cut(s)	128, 203, 216, 271, 548, 868
ApoI	RAATTY	2 cut(s)	674, 1018
AspS9I	GGNCC	2 cut(s)	755, 899
AsuC2I	CCSGG	1 cut(s)	731
AsuHPI	GGTGA	6 cut(s)	304, 322, 685, 848, 1075, 1130
AsuII	TTCGAA	1 cut(s)	713
AsuNHI	GCTAGC	1 cut(s)	943
BanI	GGYRCC	1 cut(s)	971
BanII	GRGCYC	1 cut(s)	879
BbsI	GAAGAC	1 cut(s)	718
Bbv12I	GWGCWC	1 cut(s)	879
BbvI	GCAGC	6 cut(s)	115, 190, 203, 258, 535, 855
BccI	CCATC	6 cut(s)	529, 547, 614, 659, 833, 1034
BceAI	ACGGC	1 cut(s)	454
BciT130I	CCWGG	1 cut(s)	276
BclI	TGATCA	2 cut(s)	3, 136
BcnI	CCSGG	1 cut(s)	731
BcoDI	GTCTC	2 cut(s)	184, 437
BfaI	CTAG	2 cut(s)	413, 944
BfmI	CTRYAG	1 cut(s)	549
BfrI	CTTAAG	1 cut(s)	286
BfuAI	ACCTGC	1 cut(s)	921
BisI	GCNGC	6 cut(s)	129, 204, 217, 272, 549, 869
BlsI	GCNGC	6 cut(s)	130, 205, 218, 273, 550, 870
Bme1390I	CCNGG	2 cut(s)	276, 731
BmgT120I	GGNCC	2 cut(s)	755, 899
BmiI	GGNNCC	3 cut(s)	598, 900, 973
BmrFI	CCNGG	2 cut(s)	276, 731
BmtI	GCTAGC	1 cut(s)	947
BpiI	GAAGAC	1 cut(s)	718
BplI	GAGNNNNNCTC	2 cut(s)	866, 898
BpmI	CTGGAG	2 cut(s)	288, 893
Bpu14I	TTCGAA	1 cut(s)	713
BpuEI	CTTGAG	1 cut(s)	439
BpuMI	CCSGG	1 cut(s)	731
BsaBI	GATNNNNATC	1 cut(s)	533
BsaI	GGTCTC	1 cut(s)	184
BsaJI	CCNNGG	6 cut(s)	36, 123, 165, 207, 275, 1096
BsaWI	WCCGGW	1 cut(s)	695
Bsc4I	CCNNNNNNNGG	3 cut(s)	281, 354, 895
Bse1I	ACTGG	1 cut(s)	200
Bse8I	GATNNNNATC	1 cut(s)	533
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	6 cut(s)	36, 123, 165, 207, 275, 1096
BseGI	GGATG	5 cut(s)	46, 534, 539, 960, 1045
BseJI	GATNNNNATC	1 cut(s)	533
BseLI	CCNNNNNNNGG	3 cut(s)	281, 354, 895
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	6 cut(s)	115, 190, 203, 258, 535, 855
BsgI	GTGCAG	1 cut(s)	982
BshFI	GGCC	3 cut(s)	441, 756, 901
BshNI	GGYRCC	1 cut(s)	971
BsiHKAI	GWGCWC	1 cut(s)	879
BsiSI	CCGG	2 cut(s)	696, 730
BslI	CCNNNNNNNGG	3 cut(s)	281, 354, 895
BsmAI	GTCTC	2 cut(s)	184, 437
BsmBI	CGTCTC	1 cut(s)	437
BsnI	GGCC	3 cut(s)	441, 756, 901
Bso31I	GGTCTC	1 cut(s)	184
Bsp119I	TTCGAA	1 cut(s)	713
Bsp1286I	GDGCHC	1 cut(s)	879
Bsp143I	GATC	5 cut(s)	3, 136, 250, 528, 787
BspACI	CCGC	2 cut(s)	896, 1024
BspANI	GGCC	3 cut(s)	441, 756, 901
BspLI	GGNNCC	3 cut(s)	598, 900, 973
BspMAI	CTGCAG	1 cut(s)	553
BspMI	ACCTGC	1 cut(s)	921
BspOI	GCTAGC	1 cut(s)	947
BspPI	GGATC	1 cut(s)	523
BspQI	GCTCTTC	1 cut(s)	933
BspT104I	TTCGAA	1 cut(s)	713
BspT107I	GGYRCC	1 cut(s)	971
BspTI	CTTAAG	1 cut(s)	286
BspTNI	GGTCTC	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	6 cut(s)	36, 123, 165, 207, 275, 1096
BssMI	GATC	5 cut(s)	3, 136, 250, 528, 787
BssT1I	CCWWGG	3 cut(s)	36, 165, 1096
Bst2UI	CCWGG	1 cut(s)	276
Bst6I	CTCTTC	1 cut(s)	933
BstAFI	CTTAAG	1 cut(s)	286
BstBI	TTCGAA	1 cut(s)	713
BstC8I	GCNNGC	7 cut(s)	469, 473, 553, 595, 736, 945, 1149
BstDEI	CTNAG	1 cut(s)	79
BstEII	GGTNACC	1 cut(s)	920
BstENI	CCTNNNNNAGG	1 cut(s)	279
BstF5I	GGATG	5 cut(s)	46, 534, 539, 960, 1045
BstKTI	GATC	5 cut(s)	6, 139, 253, 531, 790
BstMAI	GTCTC	2 cut(s)	184, 437
BstMBI	GATC	5 cut(s)	3, 136, 250, 528, 787
BstMWI	GCNNNNNNNGC	5 cut(s)	585, 594, 639, 805, 874
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	1151
BstPI	GGTNACC	1 cut(s)	920
BstSCI	CCNGG	2 cut(s)	274, 729
BstSFI	CTRYAG	1 cut(s)	549
BstV1I	GCAGC	6 cut(s)	115, 190, 203, 258, 535, 855
BstV2I	GAAGAC	1 cut(s)	718
BstXI	CCANNNNNNTGG	1 cut(s)	195
BsuRI	GGCC	3 cut(s)	441, 756, 901
BtsCI	GGATG	5 cut(s)	46, 534, 539, 960, 1045
BtsIMutI	CAGTG	2 cut(s)	92, 685
BveI	ACCTGC	1 cut(s)	921
Cac8I	GCNNGC	7 cut(s)	469, 473, 553, 595, 736, 945, 1149
Cfr13I	GGNCC	2 cut(s)	755, 899
Csp6I	GTAC	1 cut(s)	120
CviAII	CATG	1 cut(s)	1148
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	1 cut(s)	79
DpnI	GATC	5 cut(s)	5, 138, 252, 530, 789
DpnII	GATC	5 cut(s)	3, 136, 250, 528, 787
EaeI	YGGCCR	1 cut(s)	439
Eam1104I	CTCTTC	1 cut(s)	933
EarI	CTCTTC	1 cut(s)	933
Ecl136II	GAGCTC	1 cut(s)	877
Eco130I	CCWWGG	3 cut(s)	36, 165, 1096
Eco24I	GRGCYC	1 cut(s)	879
Eco31I	GGTCTC	1 cut(s)	184
Eco53kI	GAGCTC	1 cut(s)	877
Eco57I	CTGAAG	2 cut(s)	461, 884
Eco91I	GGTNACC	1 cut(s)	920
EcoICRI	GAGCTC	1 cut(s)	877
EcoNI	CCTNNNNNAGG	1 cut(s)	279
EcoO65I	GGTNACC	1 cut(s)	920
EcoRII	CCWGG	1 cut(s)	274
EcoT14I	CCWWGG	3 cut(s)	36, 165, 1096
EcoT22I	ATGCAT	1 cut(s)	1149
EcoT38I	GRGCYC	1 cut(s)	879
ErhI	CCWWGG	3 cut(s)	36, 165, 1096
Esp3I	CGTCTC	1 cut(s)	437
FaeI	CATG	1 cut(s)	1151
FaiI	YATR	4 cut(s)	1035, 1037, 1145, 1149
FatI	CATG	1 cut(s)	1147
FauI	CCCGC	2 cut(s)	889, 1017
FbaI	TGATCA	2 cut(s)	3, 136
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	6 cut(s)	129, 204, 217, 272, 549, 869
FokI	GGATG	5 cut(s)	53, 521, 526, 947, 1052
FriOI	GRGCYC	1 cut(s)	879
Fsp4HI	GCNGC	6 cut(s)	129, 204, 217, 272, 549, 869
FspBI	CTAG	2 cut(s)	413, 944
GluI	GCNGC	6 cut(s)	129, 204, 217, 272, 549, 869
GsuI	CTGGAG	2 cut(s)	288, 893
HaeIII	GGCC	3 cut(s)	441, 756, 901
HapII	CCGG	2 cut(s)	696, 730
Hin1II	CATG	1 cut(s)	1151
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	3 cut(s)	255, 699, 983
HpaII	CCGG	2 cut(s)	696, 730
HphI	GGTGA	6 cut(s)	304, 322, 685, 848, 1075, 1130
Hpy166II	GTNNAC	2 cut(s)	487, 683
Hpy188I	TCNGA	3 cut(s)	211, 480, 864
Hpy188III	TCNNGA	2 cut(s)	413, 825
Hpy8I	GTNNAC	2 cut(s)	487, 683
Hpy99I	CGWCG	1 cut(s)	548
HpyAV	CCTTC	4 cut(s)	43, 221, 676, 1066
HpyCH4V	TGCA	5 cut(s)	551, 621, 930, 999, 1147
HpyF10VI	GCNNNNNNNGC	5 cut(s)	585, 594, 639, 805, 874
HpyF3I	CTNAG	1 cut(s)	79
Hsp92II	CATG	1 cut(s)	1151
Ksp22I	TGATCA	2 cut(s)	3, 136
Kzo9I	GATC	5 cut(s)	3, 136, 250, 528, 787
LguI	GCTCTTC	1 cut(s)	933
LmnI	GCTCC	4 cut(s)	375, 602, 723, 874
Lsp1109I	GCAGC	6 cut(s)	115, 190, 203, 258, 535, 855
MaeI	CTAG	2 cut(s)	413, 944
MaeIII	GTNAC	2 cut(s)	920, 1122
MalI	GATC	5 cut(s)	5, 138, 252, 530, 789
MboI	GATC	5 cut(s)	3, 136, 250, 528, 787
MboII	GAAGA	6 cut(s)	58, 67, 101, 516, 718, 950
MfeI	CAATTG	1 cut(s)	890
MhlI	GDGCHC	1 cut(s)	879
MluCI	AATT	8 cut(s)	450, 499, 674, 687, 890, 915, 1018, 1030
MlyI	GAGTC	2 cut(s)	264, 693
MmeI	TCCRAC	5 cut(s)	83, 372, 817, 915, 1099
Mph1103I	ATGCAT	1 cut(s)	1149
MseI	TTAA	3 cut(s)	287, 854, 1177
MslI	CAYNNNNRTG	1 cut(s)	834
MspCI	CTTAAG	1 cut(s)	286
MspI	CCGG	2 cut(s)	696, 730
MspR9I	CCNGG	2 cut(s)	276, 731
MunI	CAATTG	1 cut(s)	890
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	5 cut(s)	585, 594, 639, 805, 874
NciI	CCSGG	1 cut(s)	731
NdeII	GATC	5 cut(s)	3, 136, 250, 528, 787
NheI	GCTAGC	1 cut(s)	943
NlaIII	CATG	1 cut(s)	1151
NlaIV	GGNNCC	3 cut(s)	598, 900, 973
NmeAIII	GCCGAG	2 cut(s)	104, 681
NsiI	ATGCAT	1 cut(s)	1149
NspI	RCATGY	1 cut(s)	1151
NspV	TTCGAA	1 cut(s)	713
OliI	CACNNNNGTG	1 cut(s)	834
PaeI	GCATGC	1 cut(s)	1151
PciSI	GCTCTTC	1 cut(s)	933
PfeI	GAWTC	1 cut(s)	983
PkrI	GCNGC	6 cut(s)	130, 205, 218, 273, 550, 870
PleI	GAGTC	2 cut(s)	263, 693
PpsI	GAGTC	2 cut(s)	263, 693
Psp124BI	GAGCTC	1 cut(s)	879
Psp6I	CCWGG	1 cut(s)	274
PspEI	GGTNACC	1 cut(s)	920
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	3 cut(s)	598, 900, 973
PspPI	GGNCC	2 cut(s)	755, 899
PstI	CTGCAG	1 cut(s)	553
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
RseI	CAYNNNNRTG	1 cut(s)	834
SacI	GAGCTC	1 cut(s)	879
SapI	GCTCTTC	1 cut(s)	933
SaqAI	TTAA	3 cut(s)	287, 854, 1177
SatI	GCNGC	6 cut(s)	129, 204, 217, 272, 549, 869
Sau3AI	GATC	5 cut(s)	3, 136, 250, 528, 787
Sau96I	GGNCC	2 cut(s)	755, 899
SchI	GAGTC	2 cut(s)	264, 693
ScrFI	CCNGG	2 cut(s)	276, 731
SduI	GDGCHC	1 cut(s)	879
SfcI	CTRYAG	1 cut(s)	549
SfuI	TTCGAA	1 cut(s)	713
SmiMI	CAYNNNNRTG	1 cut(s)	834
SmlI	CTYRAG	2 cut(s)	286, 418
SmoI	CTYRAG	2 cut(s)	286, 418
SphI	GCATGC	1 cut(s)	1151
Sse9I	AATT	8 cut(s)	450, 499, 674, 687, 890, 915, 1018, 1030
SsiI	CCGC	2 cut(s)	896, 1024
SspMI	CTAG	2 cut(s)	413, 944
SstI	GAGCTC	1 cut(s)	879
StyD4I	CCNGG	2 cut(s)	274, 729
StyI	CCWWGG	3 cut(s)	36, 165, 1096
TaqI	TCGA	6 cut(s)	253, 527, 713, 777, 884, 1092
TasI	AATT	8 cut(s)	450, 499, 674, 687, 890, 915, 1018, 1030
TfiI	GAWTC	1 cut(s)	983
Tru1I	TTAA	3 cut(s)	287, 854, 1177
Tru9I	TTAA	3 cut(s)	287, 854, 1177
TscAI	CASTG	2 cut(s)	92, 685
TseI	GCWGC	6 cut(s)	128, 203, 216, 271, 548, 868
TspDTI	ATGAA	4 cut(s)	26, 251, 444, 477
TspGWI	ACGGA	1 cut(s)	532
TspRI	CASTG	2 cut(s)	92, 685
Vha464I	CTTAAG	1 cut(s)	286
XagI	CCTNNNNNAGG	1 cut(s)	279
XapI	RAATTY	2 cut(s)	674, 1018
XbaI	TCTAGA	1 cut(s)	412
XceI	RCATGY	1 cut(s)	1151
XmiI	GTMKAC	1 cut(s)	486
XspI	CTAG	2 cut(s)	413, 944
Zsp2I	ATGCAT	1 cut(s)	1149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.