Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001554

Physical Location & Seq

Genomic Coordinates Reverse (-)

13684878 .. 13687177

Gene Structure 2300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1166700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2238 bp

ATGTCACAAAGTCAATGTCAATGGGTCCATGCGATGGTGATGGTCATGAAGGTTGATACGAACAGATTCATGGAGGATGTCTCGGCAACGCAGCTTCTTCTAATTTCCGGTCTACTTTTTCTACTGCCTTGCTCTGCTTATGCTGCCTGCGACGAACTCGACCGCGATGCTCTCTTGTCCTTGCCTTTCAAGGCACCTTTGAATTGGTCTGCTTCGACTGACTGCTGCCTTTGGGATGGAATCACCTGCGACCCACTTGACCATCGCCGCGTCATCCGGCTGTGGTTGCCGAAAAGAGGCTTATCTGGTGTCGTCTCTTTGGCCATCACCAACCTCACTCGTCTCACCCACCTCAATCTTTCCCACAATTCCCTATTGGGTTCTCTCCCAAATGACTTGCTTTCTTCCCTCCCAAGTCTTCAGGTCATTGACTTGAGCTTCAATCGTCTCATCGGCCGCTTTCCACCATCTTCTAATGGAAGCAGCCGCCTTCAGATTATAAACTTGTCCAGCAACTTCTTCAATGGAATAATCCCGGCTTCAGTCCTTGTCCCATCAATATCAATTTTCAATGTCAGCAACAACAGCTTTTCCGGGTCAATACCCATGAGCAACCGCAGCAGCCATGCTTCCCTTACATTCTTCGACTTGTCTTTCAATGAATTCACTGACACAATTCCCCCTGGAATCGGATCATGCTCCAAGCTCCAAGTTTTTCGTGCAGGCTTCAATGCACTCTCTGGTTCTCTCCCTGGTGAGATATTCAAGCTTGCTGATCTCCAACAGCTTTCTCTGCCTAACAATAGTCTCTCTGGACCCATCAGCGGTGGTATCATGAACCTCACCAATCTCAAGGTCCTAGAGCTCTTTACGAATCTGTTCTCTGGCCCAATTCCAACCCATATCGGTAGCCTTTTCAAGTTGGAAAAGCTGCTCCTCCACATCAACAACTTTACAGGTCCTTTGCCTCCATCTCTCACCAACTGCACAAATCTATCGACCTTGAATTTGCGGATCAACAACTTGACTGGAGAGCTCTCTGCCTTCAATTTTTCGACTCTCCAACGTCTCACCACTCTGGACCTTGGCAACAACAACTTCATTGGTGAGTTACCTCAAAGCCTCTACTCTTGCAAGTCCTTAACAGCTATTAGATTTGCCAGCAACCAGCTCACAGGCGAGATATCACCTGAAGTAGTCGCATTAGAATCGTTGTCTTTCCTGTCCATCTCTAACAACAACTTGAGAAATGCTGCGGGGGCCTTTAGGATTCTGAAGGGTTGCAAGAATCTAACCACTCTGGTCTTGGCCAAGAATATTTTCAATGAGCCTCTGCCAGATGATAAAAGCCTTGGAAACCCAGTTGGATTCCAAAGTCTTCAGGTTTTTGCCCTGGGCGCTTGTCAATTCACTGGTCAAATACCAACCTGGCTATCCATGCTTAAAAATCTTAAAGTCTTGGACCTACCATTTAACCACATAACTGGTCCTATTCCGGCTTCATTGGGTAGTCTGCCCAACCTTTTCTACGTGGATTTGTCTAATAACCTCATTACCGGAGGATTTCCCATTGAGTTTTGTGGGATGCCAGCTTTGACATCGAAAGAGGCCGGTGATATGATAGACAGAAGTTATCTTAAGTTGCCAGTCTTTTTGATGCCCAACAACCCTACTAATCATCAGTACAATCAGCTGTCCAATCTCCCCCCAACTATATGTCTGGGTAACAACAGCCTTACTGGCAGTATCCCTTCTGAAATTTGTCGATTGAAGTATATTCATGTGTTGGACCTTGGTCATAACAACTTCGCTGGCAGCATCCCAGAACAGATTTCCAACCTAACCAACTTAGAGAGACTGAATCTCTCTTATAACCATCTGTCCGGTGAAATCCCTAATTCTCTGAAAGGTCTGCATTTCTTGTCTTCCTTCAGTGTGGCATACAATGATCTTCAGGGACTTGTACCATCTGGAGGTCAGTTAGATACTTTTACCAGCTCTAGCTTTGAAGGGAATCCAGGACTATGCGGCCCTCCAACAGCGAACCTCTCTTGCTCGCCGGTATTTTCAGCTGCTCAGAAATCTAACACACAGGAAGTTTTTAAAGCACTCATCTTTGGGATCTCTTTTGGCTTTTTTTTTGGAATTGGTTTTGGTCTTGGTCTAAACATTGATGATAAAAGAATTCCATTCATTCCAAGGTGTAAGAAAAAATATGTAAACTTGATGCGTACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001653 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006885 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032502 GO:0032989 GO:0036211 GO:0038023 GO:0040007 GO:0042592 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045851 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051716 GO:0055067 GO:0055080 GO:0060089 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0098771 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

746

Amino Acids

80.97

Weight (kDa)

7.83

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	108 - 150	3.1e-06	Leucine rich repeat
LRR_14	PF23598	300 - 524	8.8e-12	Leucine-rich repeat region
LRR_8	PF13855	459 - 518	1.6e-06	Leucine rich repeat
LRR_8	PF13855	483 - 533	4.7e-07	Leucine rich repeat
LRR_8	PF13855	594 - 651	5.6e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17250 AT1G72300
fragaria_vesca	FvH4_6g35570 FvH4_6g35570 FvH4_6g35570 FvH4_6g36780 FvH4_6g36780 FvH4_6g36790 FvH4_6g36810
malus_domestica	MD02G1111300.v1.1 MD09G1166700.v1.1 MD09G1166900.v1.1 MD09G1171000.v1.1 MD17G1155900.v1.1 MD17G1156200.v1.1
prunus_persica	Prupe.3G024400_v2.0.a1 Prupe.3G024600_v2.0.a1 Prupe.3G024700_v2.0.a1 Prupe.3G029500_v2.0.a1
pyrus_communis	pycom09g08450 pycom17g14870 pycom17g14920
rosa_chinensis	RchiOBHm_Chr2g0147291 RchiOBHm_Chr2g0149181 RchiOBHm_Chr2g0149201
rosa_laevigata	RLG00000020249 RLG00000020378 RLG00000020379 RLG00000020380 RLG00000020381 RLG00000020382
rosa_multiflora	Rmu_co8376871.1_g000001 Rmu_sc0001615.1_g000001 Rmu_sc0001615.1_g000002 Rmu_sc0001880.1_g000001 Rmu_sc0008040.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098330 Rroxscaffold_2G00098340 Rroxscaffold_2G00099610
rosa_rugosa	Rorug02G0399000 Rorug02G0409500 Rorug02G0409600 Rorug02G0409700
rosa_samantha	Rh2AG456100 Rh2BG468800 Rh2CG443700 Rh2DG478100
rosa_wichuraiana	Rw2G037320 Rw2G038220 Rw2G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	500, 1872
AarI	CACCTGC	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	254
AccB1I	GGYRCC	1 cut(s)	193
AccB7I	CCANNNNNTGG	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	112
AccII	CGCG	2 cut(s)	165, 270
AciI	CCGC	9 cut(s)	163, 268, 457, 487, 616, 825, 1012, 1256, 2028
AclWI	GGATC	3 cut(s)	700, 1022, 2129
AcoI	YGGCCR	3 cut(s)	321, 454, 1308
AcsI	RAATTY	4 cut(s)	662, 1006, 1758, 2184
AcuI	CTGAAG	8 cut(s)	404, 476, 525, 1212, 1295, 1364, 1915, 1937
AfaI	GTAC	3 cut(s)	1685, 1965, 2233
AfiI	CCNNNNNNNGG	5 cut(s)	34, 296, 689, 824, 1973
AflII	CTTAAG	1 cut(s)	1637
AjnI	CCWGG	5 cut(s)	682, 751, 1392, 1427, 2017
AjuI	GAANNNNNNNTTGG	2 cut(s)	1304, 1336
Alw21I	GWGCWC	2 cut(s)	867, 1038
Alw26I	GTCTC	7 cut(s)	85, 319, 347, 452, 812, 1073, 1849
AlwI	GGATC	3 cut(s)	700, 1022, 2129
AoxI	GGCC	7 cut(s)	321, 454, 886, 1260, 1308, 1608, 2029
ApoI	RAATTY	4 cut(s)	662, 1006, 1758, 2184
ArsI	GACNNNNNNTTYG	3 cut(s)	33, 991, 1023
Asp700I	GAANNNNTTC	3 cut(s)	65, 878, 1319
AspLEI	GCGC	1 cut(s)	1400
AsuC2I	CCSGG	2 cut(s)	536, 595
AvaII	GGWCC	8 cut(s)	25, 815, 856, 959, 1081, 1462, 1487, 1789
BalI	TGGCCA	2 cut(s)	323, 1310
BanI	GGYRCC	1 cut(s)	193
BanII	GRGCYC	2 cut(s)	867, 1038
BbsI	GAAGAC	3 cut(s)	410, 1370, 1917
Bbv12I	GWGCWC	2 cut(s)	867, 1038
BcgI	CGANNNNNNTGC	4 cut(s)	149, 183, 1191, 1225
BciT130I	CCWGG	5 cut(s)	684, 753, 1394, 1429, 2019
BciVI	GTATCC	1 cut(s)	1757
BcnI	CCSGG	2 cut(s)	536, 595
BcoDI	GTCTC	7 cut(s)	85, 319, 347, 452, 812, 1073, 1849
BfaI	CTAG	2 cut(s)	860, 2001
BfoI	RGCGCY	1 cut(s)	1401
BfrI	CTTAAG	1 cut(s)	1637
BfuAI	ACCTGC	1 cut(s)	254
BfuI	GTATCC	1 cut(s)	1757
BglI	GCCNNNNNGGC	1 cut(s)	1740
Bme1390I	CCNGG	7 cut(s)	536, 595, 684, 753, 1394, 1429, 2019
Bme18I	GGWCC	8 cut(s)	25, 815, 856, 959, 1081, 1462, 1487, 1789
BmiI	GGNNCC	4 cut(s)	26, 195, 817, 1261
BmrFI	CCNGG	7 cut(s)	536, 595, 684, 753, 1394, 1429, 2019
BmrI	ACTGGG	1 cut(s)	1355
BmsI	GCATC	5 cut(s)	157, 1575, 1647, 1827, 2217
BmuI	ACTGGG	1 cut(s)	1355
BoxI	GACNNNNGTC	1 cut(s)	1794
BpiI	GAAGAC	3 cut(s)	410, 1370, 1917
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpmI	CTGGAG	2 cut(s)	1050, 1992
BpuEI	CTTGAG	3 cut(s)	454, 836, 1264
BpuMI	CCSGG	2 cut(s)	536, 595
BsaAI	YACGTR	2 cut(s)	1531, 2235
BsaJI	CCNNGG	8 cut(s)	682, 751, 1084, 1351, 1392, 1393, 1792, 2198
BsaWI	WCCGGW	3 cut(s)	107, 1556, 1883
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 296, 689, 824, 1973
Bse118I	RCCGGY	2 cut(s)	1610, 2059
Bse1I	ACTGG	6 cut(s)	1033, 1361, 1417, 1489, 1646, 1744
BseBI	CCWGG	5 cut(s)	684, 753, 1394, 1429, 2019
BseDI	CCNNGG	8 cut(s)	682, 751, 1084, 1351, 1392, 1393, 1792, 2198
BseGI	GGATG	5 cut(s)	82, 241, 273, 1590, 1818
BseLI	CCNNNNNNNGG	5 cut(s)	34, 296, 689, 824, 1973
BseMII	CTCAG	1 cut(s)	2090
BseNI	ACTGG	6 cut(s)	1033, 1361, 1417, 1489, 1646, 1744
BseRI	GAGGAG	1 cut(s)	926
BseX3I	CGGCCG	1 cut(s)	454
BsgI	GTGCAG	2 cut(s)	741, 970
Bsh1236I	CGCG	2 cut(s)	165, 270
Bsh1285I	CGRYCG	2 cut(s)	163, 457
BshFI	GGCC	7 cut(s)	323, 456, 888, 1262, 1310, 1610, 2031
BshNI	GGYRCC	1 cut(s)	193
BsiEI	CGRYCG	2 cut(s)	163, 457
BsiHKAI	GWGCWC	2 cut(s)	867, 1038
BsiSI	CCGG	9 cut(s)	108, 277, 536, 594, 1496, 1557, 1611, 1884, 2060
BsiWI	CGTACG	1 cut(s)	2231
BslFI	GGGAC	2 cut(s)	536, 1971
BslI	CCNNNNNNNGG	5 cut(s)	34, 296, 689, 824, 1973
BsmAI	GTCTC	7 cut(s)	85, 319, 347, 452, 812, 1073, 1849
BsmBI	CGTCTC	4 cut(s)	319, 347, 452, 1073
BsmFI	GGGAC	2 cut(s)	536, 1971
BsnI	GGCC	7 cut(s)	323, 456, 888, 1262, 1310, 1610, 2031
Bsp1286I	GDGCHC	2 cut(s)	867, 1038
Bsp143I	GATC	5 cut(s)	692, 775, 1014, 1948, 2121
BspACI	CCGC	9 cut(s)	163, 268, 457, 487, 616, 825, 1012, 1256, 2028
BspANI	GGCC	7 cut(s)	323, 456, 888, 1262, 1310, 1610, 2031
BspCNI	CTCAG	1 cut(s)	2089
BspFNI	CGCG	2 cut(s)	165, 270
BspHI	TCATGA	2 cut(s)	45, 834
BspLI	GGNNCC	4 cut(s)	26, 195, 817, 1261
BspMI	ACCTGC	1 cut(s)	254
BspPI	GGATC	3 cut(s)	700, 1022, 2129
BspT107I	GGYRCC	1 cut(s)	193
BspTI	CTTAAG	1 cut(s)	1637
BsrFI	RCCGGY	2 cut(s)	1610, 2059
BsrI	ACTGG	6 cut(s)	1033, 1361, 1417, 1489, 1646, 1744
BssAI	RCCGGY	2 cut(s)	1610, 2059
BssECI	CCNNGG	8 cut(s)	682, 751, 1084, 1351, 1392, 1393, 1792, 2198
BssMI	GATC	5 cut(s)	692, 775, 1014, 1948, 2121
BssT1I	CCWWGG	4 cut(s)	1084, 1351, 1792, 2198
Bst2UI	CCWGG	5 cut(s)	684, 753, 1394, 1429, 2019
BstAFI	CTTAAG	1 cut(s)	1637
BstBAI	YACGTR	2 cut(s)	1531, 2235
BstC8I	GCNNGC	7 cut(s)	148, 724, 771, 1162, 1590, 1813, 2057
BstDEI	CTNAG	2 cut(s)	1849, 2076
BstF5I	GGATG	5 cut(s)	82, 241, 273, 1590, 1818
BstFNI	CGCG	2 cut(s)	165, 270
BstH2I	RGCGCY	1 cut(s)	1401
BstHHI	GCGC	1 cut(s)	1400
BstKTI	GATC	5 cut(s)	695, 778, 1017, 1951, 2124
BstMAI	GTCTC	7 cut(s)	85, 319, 347, 452, 812, 1073, 1849
BstMBI	GATC	5 cut(s)	692, 775, 1014, 1948, 2121
BstMCI	CGRYCG	2 cut(s)	163, 457
BstMWI	GCNNNNNNNGC	9 cut(s)	143, 286, 585, 618, 793, 1259, 1397, 1438, 1740
BstNI	CCWGG	5 cut(s)	684, 753, 1394, 1429, 2019
BstPAI	GACNNNNGTC	1 cut(s)	1794
BstSCI	CCNGG	7 cut(s)	534, 593, 682, 751, 1392, 1427, 2017
BstSNI	TACGTA	1 cut(s)	2235
BstUI	CGCG	2 cut(s)	165, 270
BstV2I	GAAGAC	3 cut(s)	410, 1370, 1917
BstX2I	RGATCY	1 cut(s)	2121
BstXI	CCANNNNNNTGG	1 cut(s)	1484
BstYI	RGATCY	1 cut(s)	2121
BstZI	CGGCCG	1 cut(s)	454
BsuI	GTATCC	1 cut(s)	1757
BsuRI	GGCC	7 cut(s)	323, 456, 888, 1262, 1310, 1610, 2031
BtgZI	GCGATG	3 cut(s)	47, 180, 248
BtsCI	GGATG	5 cut(s)	82, 241, 273, 1590, 1818
BtsIMutI	CAGTG	3 cut(s)	666, 1410, 1939
BveI	ACCTGC	1 cut(s)	254
Cac8I	GCNNGC	7 cut(s)	148, 724, 771, 1162, 1590, 1813, 2057
CciI	TCATGA	2 cut(s)	45, 834
CfoI	GCGC	1 cut(s)	1400
Cfr10I	RCCGGY	2 cut(s)	1610, 2059
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	3 cut(s)	1684, 1964, 2232
CviAII	CATG	9 cut(s)	29, 46, 70, 607, 626, 696, 835, 1438, 1781
CviQI	GTAC	3 cut(s)	1684, 1964, 2232
DdeI	CTNAG	2 cut(s)	1849, 2076
DpnI	GATC	5 cut(s)	694, 777, 1016, 1950, 2123
DpnII	GATC	5 cut(s)	692, 775, 1014, 1948, 2121
DraI	TTTAAA	1 cut(s)	2104
EaeI	YGGCCR	3 cut(s)	321, 454, 1308
EagI	CGGCCG	1 cut(s)	454
Ecl136II	GAGCTC	2 cut(s)	865, 1036
EclXI	CGGCCG	1 cut(s)	454
Eco105I	TACGTA	1 cut(s)	2235
Eco130I	CCWWGG	4 cut(s)	1084, 1351, 1792, 2198
Eco24I	GRGCYC	2 cut(s)	867, 1038
Eco32I	GATATC	1 cut(s)	1185
Eco47I	GGWCC	8 cut(s)	25, 815, 856, 959, 1081, 1462, 1487, 1789
Eco52I	CGGCCG	1 cut(s)	454
Eco53kI	GAGCTC	2 cut(s)	865, 1036
Eco57I	CTGAAG	8 cut(s)	404, 476, 525, 1212, 1295, 1364, 1915, 1937
EcoICRI	GAGCTC	2 cut(s)	865, 1036
EcoO109I	RGGNCCY	3 cut(s)	856, 959, 1260
EcoRI	GAATTC	2 cut(s)	662, 2184
EcoRII	CCWGG	5 cut(s)	682, 751, 1392, 1427, 2017
EcoRV	GATATC	1 cut(s)	1185
EcoT14I	CCWWGG	4 cut(s)	1084, 1351, 1792, 2198
EcoT38I	GRGCYC	2 cut(s)	867, 1038
ErhI	CCWWGG	4 cut(s)	1084, 1351, 1792, 2198
Esp3I	CGTCTC	4 cut(s)	319, 347, 452, 1073
FaeI	CATG	9 cut(s)	32, 49, 73, 610, 629, 699, 838, 1441, 1784
FaqI	GGGAC	2 cut(s)	536, 1971
FatI	CATG	9 cut(s)	28, 45, 69, 606, 625, 695, 834, 1437, 1780
FauI	CCCGC	1 cut(s)	1249
FblI	GTMKAC	1 cut(s)	112
FokI	GGATG	5 cut(s)	89, 248, 260, 1597, 1805
FriOI	GRGCYC	2 cut(s)	867, 1038
FspBI	CTAG	2 cut(s)	860, 2001
GlaI	GCGC	1 cut(s)	1399
GsuI	CTGGAG	2 cut(s)	1050, 1992
HaeII	RGCGCY	1 cut(s)	1401
HaeIII	GGCC	7 cut(s)	323, 456, 888, 1262, 1310, 1610, 2031
HapII	CCGG	9 cut(s)	108, 277, 536, 594, 1496, 1557, 1611, 1884, 2060
HgaI	GACGC	1 cut(s)	259
HhaI	GCGC	1 cut(s)	1400
Hin1II	CATG	9 cut(s)	32, 49, 73, 610, 629, 699, 838, 1441, 1784
Hin6I	GCGC	1 cut(s)	1398
HinP1I	GCGC	1 cut(s)	1398
HindIII	AAGCTT	1 cut(s)	767
HpaII	CCGG	9 cut(s)	108, 277, 536, 594, 1496, 1557, 1611, 1884, 2060
Hpy166II	GTNNAC	2 cut(s)	113, 2221
Hpy188I	TCNGA	6 cut(s)	495, 692, 1275, 1756, 1905, 2079
Hpy188III	TCNNGA	5 cut(s)	46, 813, 835, 1079, 1971
Hpy8I	GTNNAC	2 cut(s)	113, 2221
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	7 cut(s)	43, 500, 1054, 1270, 1761, 1939, 2003
HpyCH4IV	ACGT	3 cut(s)	1066, 1530, 2234
HpyCH4V	TGCA	6 cut(s)	722, 734, 987, 1134, 1284, 1915
HpyF10VI	GCNNNNNNNGC	9 cut(s)	143, 286, 585, 618, 793, 1259, 1397, 1438, 1740
HpyF3I	CTNAG	2 cut(s)	1849, 2076
HpySE526I	ACGT	3 cut(s)	1066, 1530, 2234
Hsp92II	CATG	9 cut(s)	32, 49, 73, 610, 629, 699, 838, 1441, 1784
HspAI	GCGC	1 cut(s)	1398
Kzo9I	GATC	5 cut(s)	692, 775, 1014, 1948, 2121
LmnI	GCTCC	3 cut(s)	704, 711, 939
LweI	GCATC	5 cut(s)	157, 1575, 1647, 1827, 2217
MaeI	CTAG	2 cut(s)	860, 2001
MaeII	ACGT	3 cut(s)	1066, 1530, 2234
MaeIII	GTNAC	3 cut(s)	3, 1110, 1724
MalI	GATC	5 cut(s)	694, 777, 1016, 1950, 2123
MboI	GATC	5 cut(s)	692, 775, 1014, 1948, 2121
MboII	GAAGA	9 cut(s)	89, 396, 410, 462, 511, 634, 1370, 1917, 1943
MflI	RGATCY	1 cut(s)	2121
MhlI	GDGCHC	2 cut(s)	867, 1038
MlsI	TGGCCA	2 cut(s)	323, 1310
MluNI	TGGCCA	2 cut(s)	323, 1310
MlyI	GAGTC	1 cut(s)	1051
MmeI	TCCRAC	8 cut(s)	805, 903, 920, 1087, 1345, 1767, 1860, 2060
Mox20I	TGGCCA	2 cut(s)	323, 1310
MroXI	GAANNNNTTC	3 cut(s)	65, 878, 1319
MscI	TGGCCA	2 cut(s)	323, 1310
MseI	TTAA	6 cut(s)	1142, 1443, 1452, 1473, 1638, 2103
Msp20I	TGGCCA	2 cut(s)	323, 1310
MspA1I	CMGCKG	3 cut(s)	825, 1693, 2072
MspCI	CTTAAG	1 cut(s)	1637
MspI	CCGG	9 cut(s)	108, 277, 536, 594, 1496, 1557, 1611, 1884, 2060
MspR9I	CCNGG	7 cut(s)	536, 595, 684, 753, 1394, 1429, 2019
MvaI	CCWGG	5 cut(s)	684, 753, 1394, 1429, 2019
MvnI	CGCG	2 cut(s)	165, 270
MwoI	GCNNNNNNNGC	9 cut(s)	143, 286, 585, 618, 793, 1259, 1397, 1438, 1740
NciI	CCSGG	2 cut(s)	536, 595
NdeII	GATC	5 cut(s)	692, 775, 1014, 1948, 2121
NlaIII	CATG	9 cut(s)	32, 49, 73, 610, 629, 699, 838, 1441, 1784
NlaIV	GGNNCC	4 cut(s)	26, 195, 817, 1261
NmeAIII	GCCGAG	1 cut(s)	62
NmuCI	GTSAC	1 cut(s)	3
PagI	TCATGA	2 cut(s)	45, 834
PaqCI	CACCTGC	1 cut(s)	254
PasI	CCCWGGG	1 cut(s)	1393
PdmI	GAANNNNTTC	3 cut(s)	65, 878, 1319
Pfl23II	CGTACG	1 cut(s)	2231
PflMI	CCANNNNNTGG	1 cut(s)	34
PfoI	TCCNGGA	1 cut(s)	2017
PleI	GAGTC	1 cut(s)	1051
PpsI	GAGTC	1 cut(s)	1051
Ppu21I	YACGTR	2 cut(s)	1531, 2235
PpuMI	RGGWCCY	2 cut(s)	856, 959
PshAI	GACNNNNGTC	1 cut(s)	1794
PsiI	TTATAA	2 cut(s)	500, 1872
Psp124BI	GAGCTC	2 cut(s)	867, 1038
Psp5II	RGGWCCY	2 cut(s)	856, 959
Psp6I	CCWGG	5 cut(s)	682, 751, 1392, 1427, 2017
PspGI	CCWGG	5 cut(s)	682, 751, 1392, 1427, 2017
PspLI	CGTACG	1 cut(s)	2231
PspN4I	GGNNCC	4 cut(s)	26, 195, 817, 1261
PspPPI	RGGWCCY	2 cut(s)	856, 959
PsuI	RGATCY	1 cut(s)	2121
PvuII	CAGCTG	2 cut(s)	1693, 2072
RsaI	GTAC	3 cut(s)	1685, 1965, 2233
RsaNI	GTAC	3 cut(s)	1684, 1964, 2232
SacI	GAGCTC	2 cut(s)	867, 1038
SaqAI	TTAA	6 cut(s)	1142, 1443, 1452, 1473, 1638, 2103
Sau3AI	GATC	5 cut(s)	692, 775, 1014, 1948, 2121
SchI	GAGTC	1 cut(s)	1051
ScrFI	CCNGG	7 cut(s)	536, 595, 684, 753, 1394, 1429, 2019
SduI	GDGCHC	2 cut(s)	867, 1038
SfaNI	GCATC	5 cut(s)	157, 1575, 1647, 1827, 2217
SinI	GGWCC	8 cut(s)	25, 815, 856, 959, 1081, 1462, 1487, 1789
SmlI	CTYRAG	4 cut(s)	433, 851, 1243, 1637
SmoI	CTYRAG	4 cut(s)	433, 851, 1243, 1637
SnaBI	TACGTA	1 cut(s)	2235
SsiI	CCGC	9 cut(s)	163, 268, 457, 487, 616, 825, 1012, 1256, 2028
SspI	AATATT	1 cut(s)	1318
SspMI	CTAG	2 cut(s)	860, 2001
SstI	GAGCTC	2 cut(s)	867, 1038
StyD4I	CCNGG	7 cut(s)	534, 593, 682, 751, 1392, 1427, 2017
StyI	CCWWGG	4 cut(s)	1084, 1351, 1792, 2198
TaiI	ACGT	3 cut(s)	1069, 1533, 2237
TaqI	TCGA	7 cut(s)	159, 215, 645, 998, 1055, 1601, 1765
TatI	WGTACW	1 cut(s)	1683
TauI	GCSGC	4 cut(s)	270, 459, 489, 2031
Tru1I	TTAA	6 cut(s)	1142, 1443, 1452, 1473, 1638, 2103
Tru9I	TTAA	6 cut(s)	1142, 1443, 1452, 1473, 1638, 2103
TscAI	CASTG	3 cut(s)	673, 1417, 1939
TseFI	GTSAC	1 cut(s)	3
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	8 cut(s)	58, 62, 675, 851, 1090, 1491, 1769, 2182
TspRI	CASTG	3 cut(s)	673, 1417, 1939
Van91I	CCANNNNNTGG	1 cut(s)	34
Vha464I	CTTAAG	1 cut(s)	1637
VpaK11BI	GGWCC	8 cut(s)	25, 815, 856, 959, 1081, 1462, 1487, 1789
XapI	RAATTY	4 cut(s)	662, 1006, 1758, 2184
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1303
XmiI	GTMKAC	1 cut(s)	112
XmnI	GAANNNNTTC	3 cut(s)	65, 878, 1319
XspI	CTAG	2 cut(s)	860, 2001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.