Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8376871.1

Orthogroup ID

OG0001554

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 495

Gene Structure 494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8376871.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 494 bp

atgaaacccaacaaagtaaccttttccaaggacatgaagaatgatgtcccaacaacattgctaatctttctgtgtcagtgggttttcattatgttgttgctcccttcctgtgcctctgcttcttgtgatcgagtggatcgtgacgctctcttatccttagatttcaaggcctcatcaccattgaattggtctgcttcctcggactgttgcctttgggaaggaatactctgtggtccagatgatcgagtcctccatctatggttgcctgggagaggcttaagcggttcagtctccccagctatcaccaacctcacatatctcacccacctcaatctttcccagaataccctgttgggtgtacttccagatggcttgttttcctccctctttcacctccaagttctagacttgagtttcaatcgtctcaacggccacttaccaatttcatctaatgaagccagcaagcttcagattgtagacttgtccagcaatta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001653 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006885 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032502 GO:0032989 GO:0036211 GO:0038023 GO:0040007 GO:0042592 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045851 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051716 GO:0055067 GO:0055080 GO:0060089 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0098771 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

164

Amino Acids

18.0

Weight (kDa)

5.68

Isoelectric Point (pI)

34.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17250 AT1G72300
fragaria_vesca	FvH4_6g35570 FvH4_6g35570 FvH4_6g35570 FvH4_6g36780 FvH4_6g36780 FvH4_6g36790 FvH4_6g36810
malus_domestica	MD02G1111300.v1.1 MD09G1166700.v1.1 MD09G1166900.v1.1 MD09G1171000.v1.1 MD17G1155900.v1.1 MD17G1156200.v1.1
prunus_persica	Prupe.3G024400_v2.0.a1 Prupe.3G024600_v2.0.a1 Prupe.3G024700_v2.0.a1 Prupe.3G029500_v2.0.a1
pyrus_communis	pycom09g08450 pycom17g14870 pycom17g14920
rosa_chinensis	RchiOBHm_Chr2g0147291 RchiOBHm_Chr2g0149181 RchiOBHm_Chr2g0149201
rosa_laevigata	RLG00000020249 RLG00000020378 RLG00000020379 RLG00000020380 RLG00000020381 RLG00000020382
rosa_multiflora	Rmu_co8376871.1_g000001 Rmu_sc0001615.1_g000001 Rmu_sc0001615.1_g000002 Rmu_sc0001880.1_g000001 Rmu_sc0008040.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098330 Rroxscaffold_2G00098340 Rroxscaffold_2G00099610
rosa_rugosa	Rorug02G0399000 Rorug02G0409500 Rorug02G0409600 Rorug02G0409700
rosa_samantha	Rh2AG456100 Rh2BG468800 Rh2CG443700 Rh2DG478100
rosa_wichuraiana	Rw2G037320 Rw2G038220 Rw2G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	477
AciI	CCGC	1 cut(s)	282
AclWI	GGATC	1 cut(s)	144
AcoI	YGGCCR	1 cut(s)	430
AcuI	CTGAAG	1 cut(s)	452
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	1 cut(s)	272
AflII	CTTAAG	1 cut(s)	277
AgsI	TTSAA	3 cut(s)	166, 184, 418
AjnI	CCWGG	1 cut(s)	265
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AluBI	AGCT	2 cut(s)	299, 466
AluI	AGCT	2 cut(s)	299, 466
Alw26I	GTCTC	2 cut(s)	295, 428
AlwI	GGATC	1 cut(s)	144
AoxI	GGCC	2 cut(s)	168, 430
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	4 cut(s)	168, 295, 313, 383
AvaII	GGWCC	1 cut(s)	233
BccI	CCATC	2 cut(s)	261, 362
BceAI	ACGGC	1 cut(s)	445
BciT130I	CCWGG	1 cut(s)	267
BcoDI	GTCTC	2 cut(s)	295, 428
BfaI	CTAG	1 cut(s)	404
BfrI	CTTAAG	1 cut(s)	277
Bme1390I	CCNGG	1 cut(s)	267
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmrFI	CCNGG	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	430
BsaJI	CCNNGG	3 cut(s)	27, 198, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse3DI	GCAATG	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	3 cut(s)	27, 198, 266
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMI	GCAATG	1 cut(s)	56
BseYI	CCCAGC	1 cut(s)	295
BshFI	GGCC	2 cut(s)	170, 432
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	2 cut(s)	295, 428
BsmBI	CGTCTC	1 cut(s)	428
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	2 cut(s)	170, 432
Bsp143I	GATC	3 cut(s)	127, 136, 241
BspACI	CCGC	1 cut(s)	282
BspANI	GGCC	2 cut(s)	170, 432
BspPI	GGATC	1 cut(s)	144
BspTI	CTTAAG	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	56
BssECI	CCNNGG	3 cut(s)	27, 198, 266
BssMI	GATC	3 cut(s)	127, 136, 241
BssT1I	CCWWGG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	206
BstAFI	CTTAAG	1 cut(s)	277
BstC8I	GCNNGC	2 cut(s)	460, 464
BstDEI	CTNAG	1 cut(s)	157
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstKTI	GATC	3 cut(s)	130, 139, 244
BstMAI	GTCTC	2 cut(s)	295, 428
BstMBI	GATC	3 cut(s)	127, 136, 241
BstNI	CCWGG	1 cut(s)	267
BstSCI	CCNGG	1 cut(s)	265
BstXI	CCANNNNNNTGG	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	170, 432
BtsIMutI	CAGTG	1 cut(s)	83
Cac8I	GCNNGC	2 cut(s)	460, 464
Cfr13I	GGNCC	1 cut(s)	233
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	359
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	7 cut(s)	170, 276, 299, 372, 432, 458, 466
CviKI_1	RGCY	7 cut(s)	170, 276, 299, 372, 432, 458, 466
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	1 cut(s)	157
DpnI	GATC	3 cut(s)	129, 138, 243
DpnII	GATC	3 cut(s)	127, 136, 241
EaeI	YGGCCR	1 cut(s)	430
Eco130I	CCWWGG	1 cut(s)	27
Eco147I	AGGCCT	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	452
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
Esp3I	CGTCTC	1 cut(s)	428
FaeI	CATG	1 cut(s)	37
FaiI	YATR	4 cut(s)	35, 92, 259, 316
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	1 cut(s)	33
FblI	GTMKAC	1 cut(s)	477
FspBI	CTAG	1 cut(s)	404
GsaI	CCCAGC	1 cut(s)	299
HaeIII	GGCC	2 cut(s)	170, 432
HgaI	GACGC	1 cut(s)	152
Hin1II	CATG	1 cut(s)	37
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	1 cut(s)	246
HphI	GGTGA	4 cut(s)	168, 295, 313, 383
Hpy166II	GTNNAC	2 cut(s)	359, 478
Hpy188I	TCNGA	2 cut(s)	202, 471
Hpy188III	TCNNGA	4 cut(s)	140, 236, 365, 404
Hpy8I	GTNNAC	2 cut(s)	359, 478
HpyAV	CCTTC	2 cut(s)	114, 212
HpyCH4III	ACNGT	1 cut(s)	206
HpyF3I	CTNAG	1 cut(s)	157
Hsp92II	CATG	1 cut(s)	37
Kzo9I	GATC	3 cut(s)	127, 136, 241
LmnI	GCTCC	1 cut(s)	105
LpnPI	CCDG	9 cut(s)	121, 249, 252, 279, 309, 353, 362, 378, 472
MaeI	CTAG	1 cut(s)	404
MaeIII	GTNAC	2 cut(s)	16, 140
MalI	GATC	3 cut(s)	129, 138, 243
MboI	GATC	3 cut(s)	127, 136, 241
MboII	GAAGA	1 cut(s)	49
MluCI	AATT	3 cut(s)	184, 441, 490
MlyI	GAGTC	1 cut(s)	255
MseI	TTAA	1 cut(s)	278
MspCI	CTTAAG	1 cut(s)	277
MspR9I	CCNGG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	267
NdeII	GATC	3 cut(s)	127, 136, 241
NlaIII	CATG	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	140
PceI	AGGCCT	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	1 cut(s)	136
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	265
PspFI	CCCAGC	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	265
PspPI	GGNCC	1 cut(s)	233
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	278
Sau3AI	GATC	3 cut(s)	127, 136, 241
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	1 cut(s)	267
SetI	ASST	6 cut(s)	23, 301, 312, 330, 396, 468
SinI	GGWCC	1 cut(s)	233
SmlI	CTYRAG	2 cut(s)	277, 409
SmoI	CTYRAG	2 cut(s)	277, 409
Sse9I	AATT	3 cut(s)	184, 441, 490
SseBI	AGGCCT	1 cut(s)	170
SsiI	CCGC	1 cut(s)	282
SspMI	CTAG	1 cut(s)	404
StuI	AGGCCT	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	265
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	2 cut(s)	130, 244
TasI	AATT	3 cut(s)	184, 441, 490
TatI	WGTACW	1 cut(s)	358
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TscAI	CASTG	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	5 cut(s)	17, 50, 76, 435, 468
TspRI	CASTG	1 cut(s)	83
Vha464I	CTTAAG	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	233
XagI	CCTNNNNNAGG	1 cut(s)	270
XbaI	TCTAGA	1 cut(s)	403
XmiI	GTMKAC	1 cut(s)	477
XspI	CTAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.