Rorug02G0409500
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
52387536 .. 52387930
395 bp
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UTR
Exon/CDS
Intron
Rorug02G0409500.1

Sequence Viewer

Length: 303 bp
ATGGATGTCTTAGCAGGAAGAAAAACAGGTGGCTATGTTGAGGGTGACATCAGAATATCCGGGTTCCCTAAGAAACAAGAAACCTTTGCAAGAATTTCTGGTTATTGTGAACAAACTGATATCCGCTCACCCCAAGTCACTGTCAAAGAGTCGCTAATTTGCTCGGCTTTCCTTAGGCTCCCTAAAGAAGTCAGCAAACAGGACAAGATGGTTTTCGTGAGGGAAGTGATGGAACTGGTTGAGCTAGGCAGTCTCAAAGGTTGCTCTAGTGGGGCTTCCATGAATTACAGGATTGTCAACTGA

Protein Analysis

100

Amino Acids

11.11

Weight (kDa)

8.86

Isoelectric Point (pI)

36.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 126
AciI CCGC 1 cut(s) 124
AcsI RAATTY 1 cut(s) 93
AluBI AGCT 1 cut(s) 244
AluI AGCT 1 cut(s) 244
Alw26I GTCTC 1 cut(s) 257
ApoI RAATTY 1 cut(s) 93
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 2 cut(s) 56, 120
AxyI CCTNAGG 1 cut(s) 173
BccI CCATC 2 cut(s) 202, 223
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 2 cut(s) 245, 267
Bme1390I CCNGG 1 cut(s) 61
BmiI GGNNCC 2 cut(s) 65, 179
BmrFI CCNGG 1 cut(s) 61
BpuMI CCSGG 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 240
Bse21I CCTNAGG 1 cut(s) 173
BseGI GGATG 1 cut(s) 10
BseNI ACTGG 1 cut(s) 240
BsiSI CCGG 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 257
BspACI CCGC 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 65, 179
BsrBI CCGCTC 1 cut(s) 126
BsrI ACTGG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 142
BstDEI CTNAG 3 cut(s) 10, 69, 173
BstF5I GGATG 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 59
Bsu36I CCTNAGG 1 cut(s) 173
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 138
CviAII CATG 1 cut(s) 280
CviJI RGCY 5 cut(s) 33, 167, 178, 244, 275
CviKI_1 RGCY 5 cut(s) 33, 167, 178, 244, 275
DdeI CTNAG 3 cut(s) 10, 69, 173
Eco32I GATATC 1 cut(s) 121
Eco81I CCTNAGG 1 cut(s) 173
EcoRV GATATC 1 cut(s) 121
FaeI CATG 1 cut(s) 283
FaiI YATR 2 cut(s) 36, 281
FatI CATG 1 cut(s) 279
FokI GGATG 1 cut(s) 17
FspBI CTAG 2 cut(s) 245, 267
HapII CCGG 1 cut(s) 60
Hin1II CATG 1 cut(s) 283
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HinfI GANTC 1 cut(s) 149
HpaII CCGG 1 cut(s) 60
HphI GGTGA 2 cut(s) 56, 120
Hpy166II GTNNAC 2 cut(s) 110, 298
Hpy188I TCNGA 1 cut(s) 53
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 2 cut(s) 110, 298
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 89
HpyF3I CTNAG 3 cut(s) 10, 69, 173
Hsp92II CATG 1 cut(s) 283
LmnI GCTCC 1 cut(s) 183
LpnPI CCDG 6 cut(s) 12, 73, 84, 185, 221, 274
MaeI CTAG 2 cut(s) 245, 267
MaeIII GTNAC 2 cut(s) 44, 136
MbiI CCGCTC 1 cut(s) 126
MboII GAAGA 1 cut(s) 30
MluCI AATT 3 cut(s) 93, 156, 283
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 2 cut(s) 34, 213
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 61
NciI CCSGG 1 cut(s) 61
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 2 cut(s) 65, 179
NmeAIII GCCGAG 1 cut(s) 143
NmuCI GTSAC 2 cut(s) 44, 136
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PspN4I GGNNCC 2 cut(s) 65, 179
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 61
SetI ASST 4 cut(s) 31, 86, 246, 262
Sse9I AATT 3 cut(s) 93, 156, 283
SsiI CCGC 1 cut(s) 124
SspMI CTAG 2 cut(s) 245, 267
StyD4I CCNGG 1 cut(s) 59
TaaI ACNGT 1 cut(s) 142
TasI AATT 3 cut(s) 93, 156, 283
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 2 cut(s) 44, 136
Tsp45I GTSAC 2 cut(s) 44, 136
TspDTI ATGAA 1 cut(s) 296
TspRI CASTG 1 cut(s) 145
XapI RAATTY 1 cut(s) 93
XspI CTAG 2 cut(s) 245, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.