Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001554

Physical Location & Seq

Genomic Coordinates Reverse (-)

12624148 .. 12625209

Gene Structure 1062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g14870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGCTAGTAGTGTGGATGTTGTCTAATAGAAAAATCATTCCCGGAGGAGATACTGACAAGACGGATTTCGAGACCATGTCTAGCCAATCCACTGCTGTTGCTTCTGAGCTTGGCAAGGATACCAGCTTAGTCATACTGTTCCCAACCAAGACCAATGAAATCAAGGATCGTAGTATAACTGAAATCTTGAAGGCGACTGACAATTTCAGTCAAGCAAACATCATCGGGTGTGGAGGTTTTGGTCTGGTTTACAGAGCAACGTTGGCAAATGGAACCAGGCTAGCTGTTAAGAAACTCTCTGGGGACTTGGGTCTGGTGGAAAGGGAATTCACAGCAGAAGTTGAGGCACTGTCCACTGCCCAACATGAGAATCTGGTTTCCCTGCAAGGTTATTGCGTGCATGATGGTGTTCGCCTATTAATGTATTCGTATATGGAGAATGGAAGTCTGGATTATTGGTTACATGAGAAAGTGGATGGTCCTTCTCAATTAGATTGGCCAATTCGACTGGATATTCTGCGAGGAGCAGGCTGTGGGTTGGCTTACATGCACCAAATATGTGAGCCCCACATTGTGCATCGTGATATCAAGTCAAGCAACATCCTCCTGGATGATAAATTTCAAGCACATGTTGCTGATTTTGGATTGTCCCGGTTGATTCTTCCGTACCAGACTCATGTTACAACCGAGCTTGTTGGAACTCTTGGTTACATTCCTCCAGAGTATGGACAAGCATGGGTGGCTACTTTGAGAGGAGATATGTACAGTTTCGGGGTTGTCATGCTTGAGCTGCTAACCAGAAAAAGGCCTTTTGAGGTATGCAAGCCAAGGGGGTCAAGAGAGTTGGTTGGCTGGGTGCAGCAAATGAGGAGAGAAGGCAAACCTGAGGAAGTTTTTGATCCTCTCCTGAGAGGGAAAGGCTTTGAAGAAGAGATGTTGCAGGTTCTTGATGTGGCTTGCTTGTGTGTCAACCAGAACCCTCTTAAGAGACCGACGATCGAGGAAGTTATCATTTGGCTGAAAGATGTAGGGACATCCCAGCAACACGAAGATAAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001653 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006885 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032502 GO:0032989 GO:0036211 GO:0038023 GO:0040007 GO:0042592 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045851 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051716 GO:0055067 GO:0055080 GO:0060089 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0098771 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

354

Amino Acids

39.65

Weight (kDa)

5.46

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	70 - 336	4.9e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	72 - 337	2.8e-37	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17250 AT1G72300
fragaria_vesca	FvH4_6g35570 FvH4_6g35570 FvH4_6g35570 FvH4_6g36780 FvH4_6g36780 FvH4_6g36790 FvH4_6g36810
malus_domestica	MD02G1111300.v1.1 MD09G1166700.v1.1 MD09G1166900.v1.1 MD09G1171000.v1.1 MD17G1155900.v1.1 MD17G1156200.v1.1
prunus_persica	Prupe.3G024400_v2.0.a1 Prupe.3G024600_v2.0.a1 Prupe.3G024700_v2.0.a1 Prupe.3G029500_v2.0.a1
pyrus_communis	pycom09g08450 pycom17g14870 pycom17g14920
rosa_chinensis	RchiOBHm_Chr2g0147291 RchiOBHm_Chr2g0149181 RchiOBHm_Chr2g0149201
rosa_laevigata	RLG00000020249 RLG00000020378 RLG00000020379 RLG00000020380 RLG00000020381 RLG00000020382
rosa_multiflora	Rmu_co8376871.1_g000001 Rmu_sc0001615.1_g000001 Rmu_sc0001615.1_g000002 Rmu_sc0001880.1_g000001 Rmu_sc0008040.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098330 Rroxscaffold_2G00098340 Rroxscaffold_2G00099610
rosa_rugosa	Rorug02G0399000 Rorug02G0409500 Rorug02G0409600 Rorug02G0409700
rosa_samantha	Rh2AG456100 Rh2BG468800 Rh2CG443700 Rh2DG478100
rosa_wichuraiana	Rw2G037320 Rw2G038220 Rw2G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	931
AccB7I	CCANNNNNTGG	1 cut(s)	725
AclI	AACGTT	1 cut(s)	260
AclWI	GGATC	2 cut(s)	174, 893
AcoI	YGGCCR	1 cut(s)	497
AcsI	RAATTY	2 cut(s)	326, 617
AdeI	CACNNNGTG	1 cut(s)	574
AfaI	GTAC	2 cut(s)	668, 764
AfiI	CCNNNNNNNGG	2 cut(s)	725, 804
AflII	CTTAAG	1 cut(s)	983
AflIII	ACRYGT	1 cut(s)	628
AgsI	TTSAA	3 cut(s)	190, 623, 926
AjnI	CCWGG	2 cut(s)	275, 606
AluBI	AGCT	5 cut(s)	109, 126, 284, 691, 790
AluI	AGCT	5 cut(s)	109, 126, 284, 691, 790
Alw26I	GTCTC	2 cut(s)	65, 982
AlwI	GGATC	2 cut(s)	174, 893
AoxI	GGCC	2 cut(s)	497, 806
ApeKI	GCWGC	2 cut(s)	790, 859
ApoI	RAATTY	2 cut(s)	326, 617
AseI	ATTAAT	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	479
AsuC2I	CCSGG	2 cut(s)	42, 652
AsuNHI	GCTAGC	1 cut(s)	280
AvaII	GGWCC	1 cut(s)	479
AxyI	CCTNAGG	1 cut(s)	885
BalI	TGGCCA	1 cut(s)	499
BanII	GRGCYC	1 cut(s)	567
BbvI	GCAGC	2 cut(s)	777, 871
BccI	CCATC	2 cut(s)	398, 470
BciT130I	CCWGG	2 cut(s)	277, 608
BciVI	GTATCC	1 cut(s)	112
BcnI	CCSGG	2 cut(s)	42, 652
BcoDI	GTCTC	2 cut(s)	65, 982
BfaI	CTAG	4 cut(s)	5, 81, 281, 1060
BfrI	CTTAAG	1 cut(s)	983
BfuAI	ACCTGC	1 cut(s)	931
BfuI	GTATCC	1 cut(s)	112
BisI	GCNGC	2 cut(s)	791, 860
BlsI	GCNGC	2 cut(s)	792, 861
Bme1390I	CCNGG	4 cut(s)	42, 277, 608, 652
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	1 cut(s)	274
BmrFI	CCNGG	4 cut(s)	42, 277, 608, 652
BmsI	GCATC	1 cut(s)	586
BmtI	GCTAGC	1 cut(s)	284
BoxI	GACNNNNGTC	1 cut(s)	309
BpmI	CTGGAG	1 cut(s)	702
BpuEI	CTTGAG	1 cut(s)	806
BpuMI	CCSGG	2 cut(s)	42, 652
BsaI	GGTCTC	2 cut(s)	65, 982
BsaJI	CCNNGG	1 cut(s)	827
Bsc4I	CCNNNNNNNGG	2 cut(s)	725, 804
Bse1I	ACTGG	1 cut(s)	513
Bse21I	CCTNAGG	1 cut(s)	885
BseBI	CCWGG	2 cut(s)	277, 608
BseDI	CCNNGG	1 cut(s)	827
BseGI	GGATG	5 cut(s)	21, 481, 600, 616, 1034
BseLI	CCNNNNNNNGG	2 cut(s)	725, 804
BseMII	CTCAG	3 cut(s)	96, 876, 899
BseNI	ACTGG	1 cut(s)	513
BseRI	GAGGAG	4 cut(s)	60, 537, 768, 883
BseXI	GCAGC	2 cut(s)	777, 871
BseYI	CCCAGC	2 cut(s)	852, 1038
BsgI	GTGCAG	1 cut(s)	878
Bsh1285I	CGRYCG	1 cut(s)	999
BshFI	GGCC	2 cut(s)	499, 808
BsiEI	CGRYCG	1 cut(s)	999
BsiSI	CCGG	2 cut(s)	42, 652
BslFI	GGGAC	3 cut(s)	317, 634, 1045
BslI	CCNNNNNNNGG	2 cut(s)	725, 804
BsmAI	GTCTC	2 cut(s)	65, 982
BsmFI	GGGAC	3 cut(s)	317, 634, 1045
BsnI	GGCC	2 cut(s)	499, 808
Bso31I	GGTCTC	2 cut(s)	65, 982
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp1407I	TGTACA	1 cut(s)	762
Bsp143I	GATC	3 cut(s)	166, 898, 996
BspANI	GGCC	2 cut(s)	499, 808
BspCNI	CTCAG	3 cut(s)	97, 877, 900
BspLI	GGNNCC	1 cut(s)	274
BspMI	ACCTGC	1 cut(s)	931
BspOI	GCTAGC	1 cut(s)	284
BspPI	GGATC	2 cut(s)	174, 893
BspTI	CTTAAG	1 cut(s)	983
BspTNI	GGTCTC	2 cut(s)	65, 982
BsrGI	TGTACA	1 cut(s)	762
BsrI	ACTGG	1 cut(s)	513
BssECI	CCNNGG	1 cut(s)	827
BssMI	GATC	3 cut(s)	166, 898, 996
BssT1I	CCWWGG	1 cut(s)	827
Bst2UI	CCWGG	2 cut(s)	277, 608
Bst4CI	ACNGT	3 cut(s)	138, 351, 767
Bst6I	CTCTTC	1 cut(s)	924
BstAFI	CTTAAG	1 cut(s)	983
BstAPI	GCANNNNNTGC	1 cut(s)	632
BstAUI	TGTACA	1 cut(s)	762
BstC8I	GCNNGC	5 cut(s)	282, 398, 529, 824, 958
BstDEI	CTNAG	4 cut(s)	105, 127, 885, 908
BstF5I	GGATG	5 cut(s)	21, 481, 600, 616, 1034
BstKTI	GATC	3 cut(s)	169, 901, 999
BstMAI	GTCTC	2 cut(s)	65, 982
BstMBI	GATC	3 cut(s)	166, 898, 996
BstMCI	CGRYCG	1 cut(s)	999
BstMWI	GCNNNNNNNGC	4 cut(s)	263, 632, 740, 790
BstNI	CCWGG	2 cut(s)	277, 608
BstNSI	RCATGY	2 cut(s)	550, 632
BstPAI	GACNNNNGTC	1 cut(s)	309
BstSCI	CCNGG	4 cut(s)	40, 275, 606, 650
BstV1I	GCAGC	2 cut(s)	777, 871
Bsu36I	CCTNAGG	1 cut(s)	885
BsuI	GTATCC	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	499, 808
BtsCI	GGATG	5 cut(s)	21, 481, 600, 616, 1034
BtsI	GCAGTG	2 cut(s)	90, 354
BtsIMutI	CAGTG	3 cut(s)	90, 347, 354
BveI	ACCTGC	1 cut(s)	931
Cac8I	GCNNGC	5 cut(s)	282, 398, 529, 824, 958
Cfr13I	GGNCC	1 cut(s)	479
Csp6I	GTAC	2 cut(s)	667, 763
CspCI	CAANNNNNGTGG	2 cut(s)	79, 114
CviAII	CATG	9 cut(s)	76, 365, 401, 464, 547, 629, 677, 735, 781
CviQI	GTAC	2 cut(s)	667, 763
DdeI	CTNAG	4 cut(s)	105, 127, 885, 908
DpnI	GATC	3 cut(s)	168, 900, 998
DpnII	GATC	3 cut(s)	166, 898, 996
DraIII	CACNNNGTG	1 cut(s)	574
EaeI	YGGCCR	1 cut(s)	497
Eam1104I	CTCTTC	1 cut(s)	924
EarI	CTCTTC	1 cut(s)	924
Eco130I	CCWWGG	1 cut(s)	827
Eco147I	AGGCCT	1 cut(s)	808
Eco24I	GRGCYC	1 cut(s)	567
Eco31I	GGTCTC	2 cut(s)	65, 982
Eco32I	GATATC	1 cut(s)	586
Eco47I	GGWCC	1 cut(s)	479
Eco81I	CCTNAGG	1 cut(s)	885
EcoRI	GAATTC	1 cut(s)	326
EcoRII	CCWGG	2 cut(s)	275, 606
EcoRV	GATATC	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	827
EcoT38I	GRGCYC	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	827
FaeI	CATG	9 cut(s)	79, 368, 404, 467, 550, 632, 680, 738, 784
FaqI	GGGAC	3 cut(s)	317, 634, 1045
FatI	CATG	9 cut(s)	75, 364, 400, 463, 546, 628, 676, 734, 780
Fnu4HI	GCNGC	2 cut(s)	791, 860
FokI	GGATG	5 cut(s)	28, 488, 587, 623, 1021
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	2 cut(s)	791, 860
FspBI	CTAG	4 cut(s)	5, 81, 281, 1060
GluI	GCNGC	2 cut(s)	791, 860
GsaI	CCCAGC	2 cut(s)	856, 1042
GsuI	CTGGAG	1 cut(s)	702
HaeIII	GGCC	2 cut(s)	499, 808
HapII	CCGG	2 cut(s)	42, 652
Hin1II	CATG	9 cut(s)	79, 368, 404, 467, 550, 632, 680, 738, 784
HincII	GTYRAC	1 cut(s)	970
HindII	GTYRAC	1 cut(s)	970
HinfI	GANTC	3 cut(s)	370, 658, 673
HpaII	CCGG	2 cut(s)	42, 652
Hpy166II	GTNNAC	3 cut(s)	250, 354, 970
Hpy188I	TCNGA	1 cut(s)	106
Hpy188III	TCNNGA	8 cut(s)	70, 187, 449, 581, 719, 837, 907, 947
Hpy8I	GTNNAC	3 cut(s)	250, 354, 970
Hpy99I	CGWCG	1 cut(s)	997
HpyAV	CCTTC	3 cut(s)	184, 492, 869
HpyCH4III	ACNGT	3 cut(s)	138, 351, 767
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	7 cut(s)	385, 400, 550, 577, 822, 859, 940
HpyF10VI	GCNNNNNNNGC	4 cut(s)	263, 632, 740, 790
HpyF3I	CTNAG	4 cut(s)	105, 127, 885, 908
HpySE526I	ACGT	1 cut(s)	260
Hsp92II	CATG	9 cut(s)	79, 368, 404, 467, 550, 632, 680, 738, 784
Kzo9I	GATC	3 cut(s)	166, 898, 996
LmnI	GCTCC	1 cut(s)	524
Lsp1109I	GCAGC	2 cut(s)	777, 871
LweI	GCATC	1 cut(s)	586
MaeI	CTAG	4 cut(s)	5, 81, 281, 1060
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	3 cut(s)	459, 679, 707
MalI	GATC	3 cut(s)	168, 900, 998
MboI	GATC	3 cut(s)	166, 898, 996
MboII	GAAGA	4 cut(s)	653, 938, 941, 1061
MhlI	GDGCHC	1 cut(s)	567
MlsI	TGGCCA	1 cut(s)	499
MluCI	AATT	5 cut(s)	202, 326, 488, 501, 617
MluNI	TGGCCA	1 cut(s)	499
MlyI	GAGTC	1 cut(s)	667
MmeI	TCCRAC	1 cut(s)	676
Mox20I	TGGCCA	1 cut(s)	499
MscI	TGGCCA	1 cut(s)	499
MseI	TTAA	3 cut(s)	288, 419, 984
MslI	CAYNNNNRTG	1 cut(s)	405
Msp20I	TGGCCA	1 cut(s)	499
MspCI	CTTAAG	1 cut(s)	983
MspI	CCGG	2 cut(s)	42, 652
MspR9I	CCNGG	4 cut(s)	42, 277, 608, 652
MvaI	CCWGG	2 cut(s)	277, 608
MwoI	GCNNNNNNNGC	4 cut(s)	263, 632, 740, 790
NciI	CCSGG	2 cut(s)	42, 652
NdeII	GATC	3 cut(s)	166, 898, 996
NheI	GCTAGC	1 cut(s)	280
NlaIII	CATG	9 cut(s)	79, 368, 404, 467, 550, 632, 680, 738, 784
NlaIV	GGNNCC	1 cut(s)	274
NspI	RCATGY	2 cut(s)	550, 632
PceI	AGGCCT	1 cut(s)	808
PciI	ACATGT	1 cut(s)	628
PfeI	GAWTC	2 cut(s)	370, 658
PflFI	GACNNNGTC	1 cut(s)	76
PflMI	CCANNNNNTGG	1 cut(s)	725
PfoI	TCCNGGA	2 cut(s)	40, 606
PkrI	GCNGC	2 cut(s)	792, 861
Ple19I	CGATCG	1 cut(s)	999
PleI	GAGTC	1 cut(s)	667
PpsI	GAGTC	1 cut(s)	667
PscI	ACATGT	1 cut(s)	628
PshAI	GACNNNNGTC	1 cut(s)	309
PshBI	ATTAAT	1 cut(s)	419
Psp1406I	AACGTT	1 cut(s)	260
Psp6I	CCWGG	2 cut(s)	275, 606
PspFI	CCCAGC	2 cut(s)	852, 1038
PspGI	CCWGG	2 cut(s)	275, 606
PspN4I	GGNNCC	1 cut(s)	274
PspPI	GGNCC	1 cut(s)	479
PsyI	GACNNNGTC	1 cut(s)	76
PvuI	CGATCG	1 cut(s)	999
RsaI	GTAC	2 cut(s)	668, 764
RsaNI	GTAC	2 cut(s)	667, 763
RseI	CAYNNNNRTG	1 cut(s)	405
SaqAI	TTAA	3 cut(s)	288, 419, 984
SatI	GCNGC	2 cut(s)	791, 860
Sau3AI	GATC	3 cut(s)	166, 898, 996
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	1 cut(s)	667
ScrFI	CCNGG	4 cut(s)	42, 277, 608, 652
SduI	GDGCHC	1 cut(s)	567
SfaNI	GCATC	1 cut(s)	586
SinI	GGWCC	1 cut(s)	479
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	2 cut(s)	785, 983
SmoI	CTYRAG	2 cut(s)	785, 983
Sse9I	AATT	5 cut(s)	202, 326, 488, 501, 617
SseBI	AGGCCT	1 cut(s)	808
SspMI	CTAG	4 cut(s)	5, 81, 281, 1060
StuI	AGGCCT	1 cut(s)	808
StyD4I	CCNGG	4 cut(s)	40, 275, 606, 650
StyI	CCWWGG	1 cut(s)	827
TaaI	ACNGT	3 cut(s)	138, 351, 767
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	3 cut(s)	69, 505, 999
TaqII	GACCGA	1 cut(s)	1006
TasI	AATT	5 cut(s)	202, 326, 488, 501, 617
TatI	WGTACW	1 cut(s)	762
TfiI	GAWTC	2 cut(s)	370, 658
Tru1I	TTAA	3 cut(s)	288, 419, 984
Tru9I	TTAA	3 cut(s)	288, 419, 984
TscAI	CASTG	3 cut(s)	97, 354, 361
TseI	GCWGC	2 cut(s)	790, 859
TspDTI	ATGAA	1 cut(s)	171
TspGWI	ACGGA	2 cut(s)	77, 654
TspRI	CASTG	3 cut(s)	97, 354, 361
Tth111I	GACNNNGTC	1 cut(s)	76
Van91I	CCANNNNNTGG	1 cut(s)	725
Vha464I	CTTAAG	1 cut(s)	983
VpaK11BI	GGWCC	1 cut(s)	479
VspI	ATTAAT	1 cut(s)	419
XapI	RAATTY	2 cut(s)	326, 617
XceI	RCATGY	2 cut(s)	550, 632
XspI	CTAG	4 cut(s)	5, 81, 281, 1060

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.