Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001554

Physical Location & Seq

Genomic Coordinates Forward (+)

64445666 .. 64446367

Gene Structure 702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020382

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAATTTCCATAGAACAATAATACACGTTCTTCTCCATTTGGCTCAATGGGTTTTCCTTGCTTGCTTTGCCTCTGGTGCTTGTGAACAAGTGGATCGAGACGCTCTCCTTTCCTTGACCTTCAAGGTATCTCCTTTCCTTGGTCTGCTTCGATCAACTGACTGTTGCTTTTGGGAAGGAATAACTTGCAACCAAAATGATGATCATCGACATGTCGTAGCTCTATTGCTGCCTGGGAGAGGCTTAAGTGGTGTAATCTCTGTATCTGTCACCAACCTCACCTATCTCACTCACCTCAATCTCAGCAACAACAGCTTTGCTGGCAATATCCCTATTGAGATTGGGGAATTGAAGTTTATATATGTGTTGGATGTCAGTTATAACAACTTGTCTGGAAGAATCCCAGATCAAGTTTCAGAACTCACCAACTTAGAGAGACTGGATCTCTCTTATAACCATCTCCATGGTGAAATCCCTGCTTCTCTTAAAGCTCTGCATCACTTGTCTTTCTTCAGTGTGGCTTTCAATGATATCCAAGGAGTTGTGCCATCTGCTACAACGCATCGAAGCAATTTCTCTGATTGGGTTGGCAACCTTTTGGTTGCGTATCTTATGGGGGTTGTGGGATTGATAATCAAAAAGAGTGTTGTAGGGTGCGTGGTTAAGAAAAATTTAGAGCGAGCTTTGAACCGGAAACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001653 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006885 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032502 GO:0032989 GO:0036211 GO:0038023 GO:0040007 GO:0042592 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045851 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051716 GO:0055067 GO:0055080 GO:0060089 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0098771 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

234

Amino Acids

25.82

Weight (kDa)

7.16

Isoelectric Point (pI)

20.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	89 - 173	2e-09	Leucine-rich repeat region
LRR_8	PF13855	121 - 178	1.9e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17250 AT1G72300
fragaria_vesca	FvH4_6g35570 FvH4_6g35570 FvH4_6g35570 FvH4_6g36780 FvH4_6g36780 FvH4_6g36790 FvH4_6g36810
malus_domestica	MD02G1111300.v1.1 MD09G1166700.v1.1 MD09G1166900.v1.1 MD09G1171000.v1.1 MD17G1155900.v1.1 MD17G1156200.v1.1
prunus_persica	Prupe.3G024400_v2.0.a1 Prupe.3G024600_v2.0.a1 Prupe.3G024700_v2.0.a1 Prupe.3G029500_v2.0.a1
pyrus_communis	pycom09g08450 pycom17g14870 pycom17g14920
rosa_chinensis	RchiOBHm_Chr2g0147291 RchiOBHm_Chr2g0149181 RchiOBHm_Chr2g0149201
rosa_laevigata	RLG00000020249 RLG00000020378 RLG00000020379 RLG00000020380 RLG00000020381 RLG00000020382
rosa_multiflora	Rmu_co8376871.1_g000001 Rmu_sc0001615.1_g000001 Rmu_sc0001615.1_g000002 Rmu_sc0001880.1_g000001 Rmu_sc0008040.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098330 Rroxscaffold_2G00098340 Rroxscaffold_2G00099610
rosa_rugosa	Rorug02G0399000 Rorug02G0409500 Rorug02G0409600 Rorug02G0409700
rosa_samantha	Rh2AG456100 Rh2BG468800 Rh2CG443700 Rh2DG478100
rosa_wichuraiana	Rw2G037320 Rw2G038220 Rw2G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	381, 453
AclWI	GGATC	2 cut(s)	102, 450
AcsI	RAATTY	2 cut(s)	4, 670
AcuI	CTGAAG	1 cut(s)	496
AfiI	CCNNNNNNNGG	2 cut(s)	140, 239
AflII	CTTAAG	1 cut(s)	244
AflIII	ACRYGT	2 cut(s)	25, 211
AgsI	TTSAA	4 cut(s)	124, 352, 526, 688
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	4 cut(s)	221, 315, 491, 683
AluI	AGCT	4 cut(s)	221, 315, 491, 683
Alw26I	GTCTC	2 cut(s)	93, 430
AlwI	GGATC	2 cut(s)	102, 450
ApeKI	GCWGC	1 cut(s)	229
ApoI	RAATTY	2 cut(s)	4, 670
AsuHPI	GGTGA	5 cut(s)	262, 271, 284, 415, 479
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	2 cut(s)	465, 556
BciT130I	CCWGG	1 cut(s)	234
BclI	TGATCA	1 cut(s)	202
BcoDI	GTCTC	2 cut(s)	93, 430
BfrI	CTTAAG	1 cut(s)	244
BisI	GCNGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	234
BmrFI	CCNGG	1 cut(s)	234
BmsI	GCATC	2 cut(s)	505, 571
BplI	GAGNNNNNCTC	2 cut(s)	90, 122
BsaBI	GATNNNNATC	1 cut(s)	204
BsaJI	CCNNGG	4 cut(s)	139, 233, 463, 535
BsaWI	WCCGGW	1 cut(s)	690
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 239
Bse1I	ACTGG	1 cut(s)	444
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	4 cut(s)	139, 233, 463, 535
BseGI	GGATG	1 cut(s)	376
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	140, 239
BseMII	CTCAG	1 cut(s)	316
BseNI	ACTGG	1 cut(s)	444
BseXI	GCAGC	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	691
BslI	CCNNNNNNNGG	2 cut(s)	140, 239
BsmAI	GTCTC	2 cut(s)	93, 430
BsmBI	CGTCTC	1 cut(s)	93
Bsp143I	GATC	5 cut(s)	94, 152, 202, 406, 442
Bsp19I	CCATGG	1 cut(s)	463
BspCNI	CTCAG	1 cut(s)	315
BspPI	GGATC	2 cut(s)	102, 450
BspTI	CTTAAG	1 cut(s)	244
BsrI	ACTGG	1 cut(s)	444
BssECI	CCNNGG	4 cut(s)	139, 233, 463, 535
BssMI	GATC	5 cut(s)	94, 152, 202, 406, 442
BssT1I	CCWWGG	3 cut(s)	139, 463, 535
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	164
BstAFI	CTTAAG	1 cut(s)	244
BstC8I	GCNNGC	3 cut(s)	64, 322, 681
BstDEI	CTNAG	2 cut(s)	302, 430
BstDSI	CCRYGG	1 cut(s)	463
BstENI	CCTNNNNNAGG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	376
BstKTI	GATC	5 cut(s)	97, 155, 205, 409, 445
BstMAI	GTCTC	2 cut(s)	93, 430
BstMBI	GATC	5 cut(s)	94, 152, 202, 406, 442
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 77, 312, 321
BstNI	CCWGG	1 cut(s)	234
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	442
BstXI	CCANNNNNNTGG	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	442
BtgI	CCRYGG	1 cut(s)	463
BtsCI	GGATG	1 cut(s)	376
BtsIMutI	CAGTG	1 cut(s)	520
Cac8I	GCNNGC	3 cut(s)	64, 322, 681
CseI	GACGC	1 cut(s)	110
CviAII	CATG	2 cut(s)	212, 464
CviJI	RGCY	7 cut(s)	44, 221, 243, 315, 491, 521, 683
CviKI_1	RGCY	7 cut(s)	44, 221, 243, 315, 491, 521, 683
DdeI	CTNAG	2 cut(s)	302, 430
DpnI	GATC	5 cut(s)	96, 154, 204, 408, 444
DpnII	GATC	5 cut(s)	94, 152, 202, 406, 442
Eco130I	CCWWGG	3 cut(s)	139, 463, 535
Eco32I	GATATC	1 cut(s)	532
Eco57I	CTGAAG	1 cut(s)	496
EcoNI	CCTNNNNNAGG	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	232
EcoRV	GATATC	1 cut(s)	532
EcoT14I	CCWWGG	3 cut(s)	139, 463, 535
ErhI	CCWWGG	3 cut(s)	139, 463, 535
Esp3I	CGTCTC	1 cut(s)	93
FaeI	CATG	2 cut(s)	215, 467
FatI	CATG	2 cut(s)	211, 463
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	230
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	230
HapII	CCGG	1 cut(s)	691
HgaI	GACGC	1 cut(s)	110
Hin1II	CATG	2 cut(s)	215, 467
HinfI	GANTC	1 cut(s)	399
HpaII	CCGG	1 cut(s)	691
HphI	GGTGA	5 cut(s)	262, 271, 284, 415, 479
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	2 cut(s)	418, 580
Hpy188III	TCNNGA	2 cut(s)	98, 393
Hpy8I	GTNNAC	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	130, 170
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	189, 496
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 77, 312, 321
HpyF3I	CTNAG	2 cut(s)	302, 430
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	215, 467
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	5 cut(s)	94, 152, 202, 406, 442
LpnPI	CCDG	8 cut(s)	60, 219, 246, 306, 378, 417, 425, 489
Lsp1109I	GCAGC	1 cut(s)	216
LweI	GCATC	2 cut(s)	505, 571
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	5 cut(s)	96, 154, 204, 408, 444
MboI	GATC	5 cut(s)	94, 152, 202, 406, 442
MboII	GAAGA	3 cut(s)	23, 408, 502
MflI	RGATCY	1 cut(s)	442
MluCI	AATT	4 cut(s)	4, 347, 571, 670
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	4 cut(s)	82, 233, 287, 305
MseI	TTAA	3 cut(s)	245, 486, 663
MslI	CAYNNNNRTG	2 cut(s)	210, 462
MspCI	CTTAAG	1 cut(s)	244
MspI	CCGG	1 cut(s)	691
MspR9I	CCNGG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	4 cut(s)	68, 77, 312, 321
NcoI	CCATGG	1 cut(s)	463
NdeII	GATC	5 cut(s)	94, 152, 202, 406, 442
NlaIII	CATG	2 cut(s)	215, 467
NmuCI	GTSAC	1 cut(s)	268
NspI	RCATGY	1 cut(s)	215
PciI	ACATGT	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	399
PkrI	GCNGC	1 cut(s)	231
PscI	ACATGT	1 cut(s)	211
PsiI	TTATAA	2 cut(s)	381, 453
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	442
RseI	CAYNNNNRTG	2 cut(s)	210, 462
SaqAI	TTAA	3 cut(s)	245, 486, 663
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	5 cut(s)	94, 152, 202, 406, 442
ScrFI	CCNGG	1 cut(s)	234
SfaNI	GCATC	2 cut(s)	505, 571
SmiMI	CAYNNNNRTG	2 cut(s)	210, 462
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
Sse9I	AATT	4 cut(s)	4, 347, 571, 670
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	3 cut(s)	139, 463, 535
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	4 cut(s)	97, 151, 208, 565
TasI	AATT	4 cut(s)	4, 347, 571, 670
TfiI	GAWTC	1 cut(s)	399
Tru1I	TTAA	3 cut(s)	245, 486, 663
Tru9I	TTAA	3 cut(s)	245, 486, 663
TscAI	CASTG	1 cut(s)	520
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	520
Vha464I	CTTAAG	1 cut(s)	244
XagI	CCTNNNNNAGG	1 cut(s)	237
XapI	RAATTY	2 cut(s)	4, 670
XceI	RCATGY	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.