FvH4_6g53290

rRNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002783
Physical Location & Seq
Reverse (-)
39101031 .. 39102040
1010 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53290.t1

Sequence Viewer

Length: 540 bp
ATGGCTGCCTCATACTCTCTCTGCAACTTCCTCTCCTTCCTCACACCCACAAAACCCCCATCCCAGACCAAACCCCCACCTCCCCATCTCCATCTCTCCCAAACCCAGAAGCCCAGAGACGCTTTCGTCCCTCTAGTTGCCCAGCCTGGTCCCTCTTTCTCTTCTTCTTCTTCTTCGGAATTGGAGTCTGTCATCAACCCCTCTCTGGCTTATGCCAACACTCTCTTCTTTAAGTCGGCTTACAATGTCCAAGTCATCGTCGATGAGGGCGAGTCCGAGGAGCGGCTGCTCAACCGGTTCCGGCGAGAGGTGATGCGAGCTGGCGTCATCCAGGAAGTGAAGAGGAGGAGGTACTTTGAGAACACTCAGGATGAGAAGAAGCGCAGGACTCGCGATGCTGCTAAACGCAACAAAAGAAGGCGAACATTTTCGAGGCCTCCCCTTATGCAGAACAGGCAGGGGCAGGATGTCCCTGTACCGAAGAAGAGTGATGACGACGAAGATAACTGGGATCTACCTGAGGGAGACATACCCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S21

Protein Analysis

180

Amino Acids

20.59

Weight (kDa)

9.55

Isoelectric Point (pI)

68.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S21 PF01165 84 - 137 1.4e-13 Ribosomal protein S21
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 125
AccBSI CCGCTC 1 cut(s) 283
AccII CGCG 1 cut(s) 393
AciI CCGC 1 cut(s) 283
AclWI GGATC 1 cut(s) 519
AcyI GRCGYC 1 cut(s) 324
AfaI GTAC 2 cut(s) 353, 477
AfiI CCNNNNNNNGG 3 cut(s) 205, 282, 307
AgeI ACCGGT 1 cut(s) 294
AjnI CCWGG 2 cut(s) 145, 330
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 1 cut(s) 320
AluI AGCT 1 cut(s) 320
Alw26I GTCTC 2 cut(s) 111, 519
AlwI GGATC 1 cut(s) 519
AoxI GGCC 1 cut(s) 434
ApeKI GCWGC 3 cut(s) 5, 286, 398
AsiGI ACCGGT 1 cut(s) 294
Asp700I GAANNNNTTC 1 cut(s) 427
AspLEI GCGC 1 cut(s) 384
AspS9I GGNCC 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 322
AvaII GGWCC 1 cut(s) 149
AxyI CCTNAGG 1 cut(s) 519
BbvI GCAGC 2 cut(s) 273, 385
BccI CCATC 3 cut(s) 67, 93, 99
BciT130I CCWGG 2 cut(s) 147, 332
BcoDI GTCTC 2 cut(s) 111, 519
BfaI CTAG 1 cut(s) 134
BisI GCNGC 4 cut(s) 6, 284, 287, 399
BlsI GCNGC 4 cut(s) 7, 285, 288, 400
Bme1390I CCNGG 2 cut(s) 147, 332
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 2 cut(s) 151, 299
BmrFI CCNGG 2 cut(s) 147, 332
BmrI ACTGGG 1 cut(s) 517
BmsI GCATC 2 cut(s) 303, 385
BmuI ACTGGG 1 cut(s) 517
BsaHI GRCGYC 1 cut(s) 324
BsaJI CCNNGG 1 cut(s) 276
BsaWI WCCGGW 1 cut(s) 294
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 282, 307
Bse118I RCCGGY 1 cut(s) 294
Bse1I ACTGG 1 cut(s) 512
Bse21I CCTNAGG 1 cut(s) 519
BseBI CCWGG 2 cut(s) 147, 332
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 4 cut(s) 59, 327, 376, 472
BseLI CCNNNNNNNGG 3 cut(s) 205, 282, 307
BseMII CTCAG 2 cut(s) 380, 510
BseNI ACTGG 1 cut(s) 512
BseRI GAGGAG 3 cut(s) 293, 358, 361
BseXI GCAGC 2 cut(s) 273, 385
BseYI CCCAGC 1 cut(s) 141
Bsh1236I CGCG 1 cut(s) 393
BshFI GGCC 1 cut(s) 436
BshTI ACCGGT 1 cut(s) 294
BsiSI CCGG 2 cut(s) 295, 301
BslFI GGGAC 3 cut(s) 113, 135, 455
BslI CCNNNNNNNGG 3 cut(s) 205, 282, 307
BsmAI GTCTC 2 cut(s) 111, 519
BsmBI CGTCTC 1 cut(s) 111
BsmFI GGGAC 3 cut(s) 113, 135, 455
BsnI GGCC 1 cut(s) 436
Bsp143I GATC 1 cut(s) 511
Bsp68I TCGCGA 1 cut(s) 393
BspACI CCGC 1 cut(s) 283
BspANI GGCC 1 cut(s) 436
BspCNI CTCAG 2 cut(s) 379, 511
BspFNI CGCG 1 cut(s) 393
BspLI GGNNCC 2 cut(s) 151, 299
BspPI GGATC 1 cut(s) 519
BsrBI CCGCTC 1 cut(s) 283
BsrFI RCCGGY 1 cut(s) 294
BsrI ACTGG 1 cut(s) 512
BssAI RCCGGY 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 1 cut(s) 511
BssNI GRCGYC 1 cut(s) 324
Bst2UI CCWGG 2 cut(s) 147, 332
Bst6I CTCTTC 4 cut(s) 166, 230, 335, 479
BstACI GRCGYC 1 cut(s) 324
BstC8I GCNNGC 2 cut(s) 318, 322
BstDEI CTNAG 2 cut(s) 366, 519
BstF5I GGATG 4 cut(s) 59, 327, 376, 472
BstFNI CGCG 1 cut(s) 393
BstHHI GCGC 1 cut(s) 384
BstKTI GATC 1 cut(s) 514
BstMAI GTCTC 2 cut(s) 111, 519
BstMBI GATC 1 cut(s) 511
BstMWI GCNNNNNNNGC 2 cut(s) 390, 454
BstNI CCWGG 2 cut(s) 147, 332
BstSCI CCNGG 2 cut(s) 145, 330
BstUI CGCG 1 cut(s) 393
BstV1I GCAGC 2 cut(s) 273, 385
BstX2I RGATCY 1 cut(s) 511
BstYI RGATCY 1 cut(s) 511
Bsu36I CCTNAGG 1 cut(s) 519
BsuRI GGCC 1 cut(s) 436
BtgZI GCGATG 1 cut(s) 408
BtsCI GGATG 4 cut(s) 59, 327, 376, 472
BtuMI TCGCGA 1 cut(s) 393
Cac8I GCNNGC 2 cut(s) 318, 322
CfoI GCGC 1 cut(s) 384
Cfr10I RCCGGY 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 149
CseI GACGC 2 cut(s) 128, 313
Csp6I GTAC 2 cut(s) 352, 476
CspAI ACCGGT 1 cut(s) 294
CviJI RGCY 8 cut(s) 5, 112, 145, 209, 239, 286, 320, 436
CviKI_1 RGCY 8 cut(s) 5, 112, 145, 209, 239, 286, 320, 436
CviQI GTAC 2 cut(s) 352, 476
DdeI CTNAG 2 cut(s) 366, 519
DpnI GATC 1 cut(s) 513
DpnII GATC 1 cut(s) 511
DrdI GACNNNNNNGTC 1 cut(s) 125
DseDI GACNNNNNNGTC 1 cut(s) 125
Eam1104I CTCTTC 4 cut(s) 166, 230, 335, 479
EarI CTCTTC 4 cut(s) 166, 230, 335, 479
Eco147I AGGCCT 1 cut(s) 436
Eco47I GGWCC 1 cut(s) 149
Eco81I CCTNAGG 1 cut(s) 519
EcoRII CCWGG 2 cut(s) 145, 330
Esp3I CGTCTC 1 cut(s) 111
FaiI YATR 4 cut(s) 13, 213, 446, 530
FaqI GGGAC 3 cut(s) 113, 135, 455
Fnu4HI GCNGC 4 cut(s) 6, 284, 287, 399
FokI GGATG 4 cut(s) 46, 314, 383, 479
Fsp4HI GCNGC 4 cut(s) 6, 284, 287, 399
FspBI CTAG 1 cut(s) 134
GlaI GCGC 1 cut(s) 383
GluI GCNGC 4 cut(s) 6, 284, 287, 399
GsaI CCCAGC 1 cut(s) 145
HaeIII GGCC 1 cut(s) 436
HapII CCGG 2 cut(s) 295, 301
HgaI GACGC 2 cut(s) 128, 313
HhaI GCGC 1 cut(s) 384
Hin1I GRCGYC 1 cut(s) 324
Hin6I GCGC 1 cut(s) 382
HinP1I GCGC 1 cut(s) 382
HinfI GANTC 3 cut(s) 185, 272, 388
HpaII CCGG 2 cut(s) 295, 301
HphI GGTGA 1 cut(s) 322
Hpy188I TCNGA 2 cut(s) 178, 277
Hpy188III TCNNGA 2 cut(s) 368, 392
Hpy99I CGWCG 2 cut(s) 263, 500
HpyAV CCTTC 2 cut(s) 46, 411
HpyCH4V TGCA 2 cut(s) 24, 448
HpyF10VI GCNNNNNNNGC 2 cut(s) 390, 454
HpyF3I CTNAG 2 cut(s) 366, 519
Hsp92I GRCGYC 1 cut(s) 324
HspAI GCGC 1 cut(s) 382
Kzo9I GATC 1 cut(s) 511
LmnI GCTCC 1 cut(s) 280
Lsp1109I GCAGC 2 cut(s) 273, 385
LweI GCATC 2 cut(s) 303, 385
MaeI CTAG 1 cut(s) 134
MalI GATC 1 cut(s) 513
MbiI CCGCTC 1 cut(s) 283
MboI GATC 1 cut(s) 511
MflI RGATCY 1 cut(s) 511
MluCI AATT 1 cut(s) 179
MlyI GAGTC 3 cut(s) 194, 281, 382
MroXI GAANNNNTTC 1 cut(s) 427
MseI TTAA 1 cut(s) 231
MspI CCGG 2 cut(s) 295, 301
MspR9I CCNGG 2 cut(s) 147, 332
MvaI CCWGG 2 cut(s) 147, 332
MvnI CGCG 1 cut(s) 393
MwoI GCNNNNNNNGC 2 cut(s) 390, 454
NdeII GATC 1 cut(s) 511
NlaIV GGNNCC 2 cut(s) 151, 299
NruI TCGCGA 1 cut(s) 393
PceI AGGCCT 1 cut(s) 436
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 427
PfoI TCCNGGA 1 cut(s) 330
PinAI ACCGGT 1 cut(s) 294
PkrI GCNGC 4 cut(s) 7, 285, 288, 400
PleI GAGTC 3 cut(s) 193, 280, 382
PpsI GAGTC 3 cut(s) 193, 280, 382
Psp6I CCWGG 2 cut(s) 145, 330
PspFI CCCAGC 1 cut(s) 141
PspGI CCWGG 2 cut(s) 145, 330
PspN4I GGNNCC 2 cut(s) 151, 299
PspPI GGNCC 1 cut(s) 149
PsuI RGATCY 1 cut(s) 511
RruI TCGCGA 1 cut(s) 393
RsaI GTAC 2 cut(s) 353, 477
RsaNI GTAC 2 cut(s) 352, 476
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 4 cut(s) 6, 284, 287, 399
Sau3AI GATC 1 cut(s) 511
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 3 cut(s) 194, 281, 382
ScrFI CCNGG 2 cut(s) 147, 332
SetI ASST 5 cut(s) 82, 312, 322, 353, 520
SfaNI GCATC 2 cut(s) 303, 385
SinI GGWCC 1 cut(s) 149
Sse9I AATT 1 cut(s) 179
SseBI AGGCCT 1 cut(s) 436
SsiI CCGC 1 cut(s) 283
SspMI CTAG 1 cut(s) 134
StuI AGGCCT 1 cut(s) 436
StyD4I CCNGG 2 cut(s) 145, 330
TaqI TCGA 2 cut(s) 261, 431
TasI AATT 1 cut(s) 179
TauI GCSGC 1 cut(s) 286
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TseI GCWGC 3 cut(s) 5, 286, 398
VpaK11BI GGWCC 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 427
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.